[INFO] cloning repository https://github.com/Mimerme/Mimerme
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Mimerme/Mimerme" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMimerme%2FMimerme", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMimerme%2FMimerme'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] df63a69dd00123b2eb2ab3520f84fe54a79a107d
[INFO] checking Mimerme/Mimerme against master#5518eaa946291f00471af8b254b2a1715f234882 for pr-120393
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMimerme%2FMimerme" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/Mimerme/Mimerme on toolchain 5518eaa946291f00471af8b254b2a1715f234882
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+5518eaa946291f00471af8b254b2a1715f234882" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/Mimerme/Mimerme
[INFO] finished tweaking git repo https://github.com/Mimerme/Mimerme
[INFO] tweaked toml for git repo https://github.com/Mimerme/Mimerme written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/Mimerme/Mimerme already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+5518eaa946291f00471af8b254b2a1715f234882" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded snafu v0.6.0
[INFO] [stderr]   Downloaded bio-types v0.6.0
[INFO] [stderr]   Downloaded clang-sys v0.29.2
[INFO] [stderr]   Downloaded hts-sys v1.10.2
[INFO] [stderr]   Downloaded snafu-derive v0.6.3
[INFO] [stderr]   Downloaded rust-htslib v0.29.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+5518eaa946291f00471af8b254b2a1715f234882" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 9f1e9662404cb9dcd6b609dc1fa5fcb47f58491a8343da38cb7a1e4ec32e476f
[INFO] running `Command { std: "docker" "start" "-a" "9f1e9662404cb9dcd6b609dc1fa5fcb47f58491a8343da38cb7a1e4ec32e476f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "9f1e9662404cb9dcd6b609dc1fa5fcb47f58491a8343da38cb7a1e4ec32e476f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9f1e9662404cb9dcd6b609dc1fa5fcb47f58491a8343da38cb7a1e4ec32e476f", kill_on_drop: false }`
[INFO] [stdout] 9f1e9662404cb9dcd6b609dc1fa5fcb47f58491a8343da38cb7a1e4ec32e476f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+5518eaa946291f00471af8b254b2a1715f234882" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 844026540d018a6382a60e47f93cb7b8dc0019e9fb59db7859a1089e5f98a744
[INFO] running `Command { std: "docker" "start" "-a" "844026540d018a6382a60e47f93cb7b8dc0019e9fb59db7859a1089e5f98a744", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.9
[INFO] [stderr]    Compiling unicode-xid v0.2.0
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling cc v1.0.50
[INFO] [stderr]    Compiling syn v1.0.17
[INFO] [stderr]    Compiling libc v0.2.68
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling version_check v0.9.1
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling nom v5.1.1
[INFO] [stderr]    Compiling clang-sys v0.29.2
[INFO] [stderr]    Compiling thread_local v1.0.1
[INFO] [stderr]    Compiling pkg-config v0.3.17
[INFO] [stderr]    Compiling aho-corasick v0.7.10
[INFO] [stderr]    Compiling bindgen v0.53.2
[INFO] [stderr]    Compiling regex-syntax v0.6.17
[INFO] [stderr]    Compiling quote v1.0.3
[INFO] [stderr]    Compiling lazycell v1.2.1
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling libloading v0.5.2
[INFO] [stderr]    Compiling libz-sys v1.0.25
[INFO] [stderr]    Compiling cfg-if v0.1.10
[INFO] [stderr]    Compiling serde v1.0.105
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling shlex v0.1.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking smallvec v1.2.0
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking unicode-normalization v0.1.12
[INFO] [stderr]    Compiling byteorder v1.3.4
[INFO] [stderr]    Compiling cexpr v0.4.0
[INFO] [stderr]     Checking idna v0.2.0
[INFO] [stderr]     Checking percent-encoding v2.1.0
[INFO] [stderr]    Compiling regex v1.3.6
[INFO] [stderr]     Checking either v1.5.3
[INFO] [stderr]     Checking itertools v0.8.2
[INFO] [stderr]     Checking url v2.1.1
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]    Compiling serde_derive v1.0.105
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling snafu-derive v0.6.3
[INFO] [stderr]     Checking snafu v0.6.0
[INFO] [stderr]    Compiling hts-sys v1.10.2
[INFO] [stderr]     Checking bio-types v0.6.0
[INFO] [stderr]     Checking bincode v1.2.1
[INFO] [stderr]     Checking rust-htslib v0.29.0
[INFO] [stderr]     Checking fmmap v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `std::str::Chars`
[INFO] [stdout]  --> src/main.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use std::str::Chars;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::iter::Rev`
[INFO] [stdout]  --> src/main.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::iter::Rev;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Aux`
[INFO] [stdout]   --> src/main.rs:12:45
[INFO] [stdout]    |
[INFO] [stdout] 12 | use rust_htslib::bam::record::{CigarString, Aux, Cigar};
[INFO] [stdout]    |                                             ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::convert::TryFrom`
[INFO] [stdout]   --> src/main.rs:14:5
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::convert::TryFrom;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `thread`, `time`
[INFO] [stdout]   --> src/main.rs:15:11
[INFO] [stdout]    |
[INFO] [stdout] 15 | use std::{thread, time};
[INFO] [stdout]    |           ^^^^^^  ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::str::Chars`
[INFO] [stdout]  --> src/main.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use std::str::Chars;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::iter::Rev`
[INFO] [stdout]  --> src/main.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::iter::Rev;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Aux`
[INFO] [stdout]   --> src/main.rs:12:45
[INFO] [stdout]    |
[INFO] [stdout] 12 | use rust_htslib::bam::record::{CigarString, Aux, Cigar};
[INFO] [stdout]    |                                             ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::convert::TryFrom`
[INFO] [stdout]   --> src/main.rs:14:5
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::convert::TryFrom;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `thread`, `time`
[INFO] [stdout]   --> src/main.rs:15:11
[INFO] [stdout]    |
[INFO] [stdout] 15 | use std::{thread, time};
[INFO] [stdout]    |           ^^^^^^  ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary trailing semicolon
[INFO] [stdout]    --> src/main.rs:356:3
[INFO] [stdout]     |
[INFO] [stdout] 356 |     };
[INFO] [stdout]     |      ^ help: remove this semicolon
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(redundant_semicolons)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary trailing semicolon
[INFO] [stdout]    --> src/main.rs:356:3
[INFO] [stdout]     |
[INFO] [stdout] 356 |     };
[INFO] [stdout]     |      ^ help: remove this semicolon
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(redundant_semicolons)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:110:7
[INFO] [stdout]     |
[INFO] [stdout] 110 |         let mut c1 = remaining_query.next().unwrap();
[INFO] [stdout]     |             ----^^
[INFO] [stdout]     |             |
[INFO] [stdout]     |             help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:110:7
[INFO] [stdout]     |
[INFO] [stdout] 110 |         let mut c1 = remaining_query.next().unwrap();
[INFO] [stdout]     |             ----^^
[INFO] [stdout]     |             |
[INFO] [stdout]     |             help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `seed_pos`
[INFO] [stdout]    --> src/main.rs:392:7
[INFO] [stdout]     |
[INFO] [stdout] 392 |         let seed_pos = 0;
[INFO] [stdout]     |             ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_seed_pos`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `seed_pos`
[INFO] [stdout]    --> src/main.rs:392:7
[INFO] [stdout]     |
[INFO] [stdout] 392 |         let seed_pos = 0;
[INFO] [stdout]     |             ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_seed_pos`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `seqs`
[INFO] [stdout]    --> src/main.rs:516:16
[INFO] [stdout]     |
[INFO] [stdout] 516 | let (names, _, seqs, quals, cigars) = gold();
[INFO] [stdout]     |                ^^^^ help: if this is intentional, prefix it with an underscore: `_seqs`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `quals`
[INFO] [stdout]    --> src/main.rs:516:22
[INFO] [stdout]     |
[INFO] [stdout] 516 | let (names, _, seqs, quals, cigars) = gold();
[INFO] [stdout]     |                      ^^^^^ help: if this is intentional, prefix it with an underscore: `_quals`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `cigars`
[INFO] [stdout]    --> src/main.rs:516:29
[INFO] [stdout]     |
[INFO] [stdout] 516 | let (names, _, seqs, quals, cigars) = gold();
[INFO] [stdout]     |                             ^^^^^^ help: if this is intentional, prefix it with an underscore: `_cigars`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `name`
[INFO] [stdout]    --> src/main.rs:532:17
[INFO] [stdout]     |
[INFO] [stdout] 532 |             for name in names.iter() {
[INFO] [stdout]     |                 ^^^^ help: if this is intentional, prefix it with an underscore: `_name`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:659:6
[INFO] [stdout]     |
[INFO] [stdout] 659 |     let mut sequence = 
[INFO] [stdout]     |         ----^^^^^^^^
[INFO] [stdout]     |         |
[INFO] [stdout]     |         help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:665:11
[INFO] [stdout]     |
[INFO] [stdout] 665 |                         let mut sequence = fs::read_to_string(input_file)
[INFO] [stdout]     |                             ----^^^^^^^^
[INFO] [stdout]     |                             |
[INFO] [stdout]     |                             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:669:11
[INFO] [stdout]     |
[INFO] [stdout] 669 |                         let mut split = sequence.split("\n");
[INFO] [stdout]     |                             ----^^^^^
[INFO] [stdout]     |                             |
[INFO] [stdout]     |                             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `sam`
[INFO] [stdout]    --> src/main.rs:548:13
[INFO] [stdout]     |
[INFO] [stdout] 548 |     let mut sam = Writer::from_path("test123.sam", &header, Format::SAM);
[INFO] [stdout]     |             ^^^ help: if this is intentional, prefix it with an underscore: `_sam`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:792:6
[INFO] [stdout]     |
[INFO] [stdout] 792 |     let mut sequence = 
[INFO] [stdout]     |         ----^^^^^^^^
[INFO] [stdout]     |         |
[INFO] [stdout]     |         help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:548:9
[INFO] [stdout]     |
[INFO] [stdout] 548 |     let mut sam = Writer::from_path("test123.sam", &header, Format::SAM);
[INFO] [stdout]     |         ----^^^
[INFO] [stdout]     |         |
[INFO] [stdout]     |         help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:796:9
[INFO] [stdout]     |
[INFO] [stdout] 796 |                 let mut sequence = fs::read_to_string(input_file)
[INFO] [stdout]     |                     ----^^^^^^^^
[INFO] [stdout]     |                     |
[INFO] [stdout]     |                     help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:800:9
[INFO] [stdout]     |
[INFO] [stdout] 800 |                 let mut split = sequence.split("\n");
[INFO] [stdout]     |                     ----^^^^^
[INFO] [stdout]     |                     |
[INFO] [stdout]     |                     help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:659:6
[INFO] [stdout]     |
[INFO] [stdout] 659 |     let mut sequence = 
[INFO] [stdout]     |         ----^^^^^^^^
[INFO] [stdout]     |         |
[INFO] [stdout]     |         help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:665:11
[INFO] [stdout]     |
[INFO] [stdout] 665 |                         let mut sequence = fs::read_to_string(input_file)
[INFO] [stdout]     |                             ----^^^^^^^^
[INFO] [stdout]     |                             |
[INFO] [stdout]     |                             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:669:11
[INFO] [stdout]     |
[INFO] [stdout] 669 |                         let mut split = sequence.split("\n");
[INFO] [stdout]     |                             ----^^^^^
[INFO] [stdout]     |                             |
[INFO] [stdout]     |                             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:792:6
[INFO] [stdout]     |
[INFO] [stdout] 792 |     let mut sequence = 
[INFO] [stdout]     |         ----^^^^^^^^
[INFO] [stdout]     |         |
[INFO] [stdout]     |         help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:796:9
[INFO] [stdout]     |
[INFO] [stdout] 796 |                 let mut sequence = fs::read_to_string(input_file)
[INFO] [stdout]     |                     ----^^^^^^^^
[INFO] [stdout]     |                     |
[INFO] [stdout]     |                     help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:800:9
[INFO] [stdout]     |
[INFO] [stdout] 800 |                 let mut split = sequence.split("\n");
[INFO] [stdout]     |                     ----^^^^^
[INFO] [stdout]     |                     |
[INFO] [stdout]     |                     help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `name` and `id` are never read
[INFO] [stdout]   --> src/main.rs:62:2
[INFO] [stdout]    |
[INFO] [stdout] 61 | struct GenRead{
[INFO] [stdout]    |        ------- fields in this struct
[INFO] [stdout] 62 |     name: String,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 63 |     id : u32,
[INFO] [stdout]    |     ^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `print_2d_vec` is never used
[INFO] [stdout]    --> src/main.rs:193:4
[INFO] [stdout]     |
[INFO] [stdout] 193 | fn print_2d_vec<T : Debug>(matrix : &Vec<Vec<T>>){
[INFO] [stdout]     |    ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `fitting_alignment` is never used
[INFO] [stdout]    --> src/main.rs:203:4
[INFO] [stdout]     |
[INFO] [stdout] 203 | fn fitting_alignment(x : &str, y : &str) -> Vec<Alignment> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `add` is never used
[INFO] [stdout]    --> src/main.rs:450:4
[INFO] [stdout]     |
[INFO] [stdout] 450 | fn add(a : &mut Vec<i32>){
[INFO] [stdout]     |    ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `gold` is never used
[INFO] [stdout]    --> src/main.rs:459:4
[INFO] [stdout]     |
[INFO] [stdout] 459 | fn gold() -> (
[INFO] [stdout]     |    ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `CIGAR` should have a snake case name
[INFO] [stdout]   --> src/main.rs:70:2
[INFO] [stdout]    |
[INFO] [stdout] 70 |     CIGAR : Vec<Cigar>,
[INFO] [stdout]    |     ^^^^^ help: convert the identifier to snake case: `cigar`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `name` and `id` are never read
[INFO] [stdout]   --> src/main.rs:62:2
[INFO] [stdout]    |
[INFO] [stdout] 61 | struct GenRead{
[INFO] [stdout]    |        ------- fields in this struct
[INFO] [stdout] 62 |     name: String,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 63 |     id : u32,
[INFO] [stdout]    |     ^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `print_2d_vec` is never used
[INFO] [stdout]    --> src/main.rs:193:4
[INFO] [stdout]     |
[INFO] [stdout] 193 | fn print_2d_vec<T : Debug>(matrix : &Vec<Vec<T>>){
[INFO] [stdout]     |    ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `fitting_alignment` is never used
[INFO] [stdout]    --> src/main.rs:203:4
[INFO] [stdout]     |
[INFO] [stdout] 203 | fn fitting_alignment(x : &str, y : &str) -> Vec<Alignment> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `CIGAR` should have a snake case name
[INFO] [stdout]   --> src/main.rs:70:2
[INFO] [stdout]    |
[INFO] [stdout] 70 |     CIGAR : Vec<Cigar>,
[INFO] [stdout]    |     ^^^^^ help: convert the identifier to snake case: `cigar`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `Result` that must be used
[INFO] [stdout]    --> src/main.rs:368:2
[INFO] [stdout]     |
[INFO] [stdout] 368 |     file.read_to_end(&mut data);
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]     = note: `#[warn(unused_must_use)]` on by default
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]     |
[INFO] [stdout] 368 |     let _ = file.read_to_end(&mut data);
[INFO] [stdout]     |     +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `gap` should have an upper case name
[INFO] [stdout]    --> src/main.rs:384:8
[INFO] [stdout]     |
[INFO] [stdout] 384 |     const gap : usize = 5;
[INFO] [stdout]     |           ^^^ help: convert the identifier to upper case: `GAP`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(non_upper_case_globals)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `L_col` should have a snake case name
[INFO] [stdout]    --> src/main.rs:711:10
[INFO] [stdout]     |
[INFO] [stdout] 711 |     let mut L_col = Vec::<char>::new();
[INFO] [stdout]     |             ^^^^^ help: convert the identifier to snake case: `l_col`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F_col` should have a snake case name
[INFO] [stdout]    --> src/main.rs:712:10
[INFO] [stdout]     |
[INFO] [stdout] 712 |     let mut F_col = Vec::<char>::new();
[INFO] [stdout]     |             ^^^^^ help: convert the identifier to snake case (notice the capitalization): `f_col`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F_col_compressed` should have a snake case name
[INFO] [stdout]    --> src/main.rs:752:10
[INFO] [stdout]     |
[INFO] [stdout] 752 |     let mut F_col_compressed = HashMap::<char, usize>::new();
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `f_col_compressed`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `Result` that must be used
[INFO] [stdout]    --> src/main.rs:368:2
[INFO] [stdout]     |
[INFO] [stdout] 368 |     file.read_to_end(&mut data);
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]     = note: `#[warn(unused_must_use)]` on by default
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]     |
[INFO] [stdout] 368 |     let _ = file.read_to_end(&mut data);
[INFO] [stdout]     |     +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `gap` should have an upper case name
[INFO] [stdout]    --> src/main.rs:384:8
[INFO] [stdout]     |
[INFO] [stdout] 384 |     const gap : usize = 5;
[INFO] [stdout]     |           ^^^ help: convert the identifier to upper case: `GAP`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(non_upper_case_globals)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `L_col` should have a snake case name
[INFO] [stdout]    --> src/main.rs:711:10
[INFO] [stdout]     |
[INFO] [stdout] 711 |     let mut L_col = Vec::<char>::new();
[INFO] [stdout]     |             ^^^^^ help: convert the identifier to snake case: `l_col`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F_col` should have a snake case name
[INFO] [stdout]    --> src/main.rs:712:10
[INFO] [stdout]     |
[INFO] [stdout] 712 |     let mut F_col = Vec::<char>::new();
[INFO] [stdout]     |             ^^^^^ help: convert the identifier to snake case (notice the capitalization): `f_col`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F_col_compressed` should have a snake case name
[INFO] [stdout]    --> src/main.rs:752:10
[INFO] [stdout]     |
[INFO] [stdout] 752 |     let mut F_col_compressed = HashMap::<char, usize>::new();
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `f_col_compressed`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 25 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 29 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 12.84s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: bindgen v0.53.2, nom v5.1.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "844026540d018a6382a60e47f93cb7b8dc0019e9fb59db7859a1089e5f98a744", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "844026540d018a6382a60e47f93cb7b8dc0019e9fb59db7859a1089e5f98a744", kill_on_drop: false }`
[INFO] [stdout] 844026540d018a6382a60e47f93cb7b8dc0019e9fb59db7859a1089e5f98a744
[INFO] checking Mimerme/Mimerme against try#7622c0f807a4e13c4db886a1681bf343795692df+rustflags=-Dnon_local_definitions for pr-120393
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMimerme%2FMimerme" "/workspace/builds/worker-7-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/Mimerme/Mimerme on toolchain 7622c0f807a4e13c4db886a1681bf343795692df
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+7622c0f807a4e13c4db886a1681bf343795692df" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/Mimerme/Mimerme
[INFO] finished tweaking git repo https://github.com/Mimerme/Mimerme
[INFO] tweaked toml for git repo https://github.com/Mimerme/Mimerme written to /workspace/builds/worker-7-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/Mimerme/Mimerme already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+7622c0f807a4e13c4db886a1681bf343795692df" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+7622c0f807a4e13c4db886a1681bf343795692df" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 7aa80b368b4c273f31ba25835ceef81a471846c3bd1e527ca13c78172b3ec032
[INFO] running `Command { std: "docker" "start" "-a" "7aa80b368b4c273f31ba25835ceef81a471846c3bd1e527ca13c78172b3ec032", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "7aa80b368b4c273f31ba25835ceef81a471846c3bd1e527ca13c78172b3ec032", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7aa80b368b4c273f31ba25835ceef81a471846c3bd1e527ca13c78172b3ec032", kill_on_drop: false }`
[INFO] [stdout] 7aa80b368b4c273f31ba25835ceef81a471846c3bd1e527ca13c78172b3ec032
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Dnon_local_definitions" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+7622c0f807a4e13c4db886a1681bf343795692df" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] cc70f5dae66512954ea74002c528cd80954440a3c470c78e27dcf09f7914342b
[INFO] running `Command { std: "docker" "start" "-a" "cc70f5dae66512954ea74002c528cd80954440a3c470c78e27dcf09f7914342b", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.9
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling unicode-xid v0.2.0
[INFO] [stderr]    Compiling cc v1.0.50
[INFO] [stderr]    Compiling syn v1.0.17
[INFO] [stderr]    Compiling libc v0.2.68
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling version_check v0.9.1
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling nom v5.1.1
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling pkg-config v0.3.17
[INFO] [stderr]    Compiling thread_local v1.0.1
[INFO] [stderr]    Compiling clang-sys v0.29.2
[INFO] [stderr]    Compiling aho-corasick v0.7.10
[INFO] [stderr]    Compiling bindgen v0.53.2
[INFO] [stderr]    Compiling regex-syntax v0.6.17
[INFO] [stderr]    Compiling quote v1.0.3
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]    Compiling libloading v0.5.2
[INFO] [stderr]    Compiling libz-sys v1.0.25
[INFO] [stderr]    Compiling cfg-if v0.1.10
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling lazycell v1.2.1
[INFO] [stderr]    Compiling shlex v0.1.1
[INFO] [stderr]    Compiling serde v1.0.105
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking smallvec v1.2.0
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]     Checking unicode-normalization v0.1.12
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling byteorder v1.3.4
[INFO] [stderr]    Compiling cexpr v0.4.0
[INFO] [stderr]     Checking idna v0.2.0
[INFO] [stderr]     Checking percent-encoding v2.1.0
[INFO] [stderr]    Compiling regex v1.3.6
[INFO] [stderr]     Checking either v1.5.3
[INFO] [stderr]     Checking itertools v0.8.2
[INFO] [stderr]     Checking url v2.1.1
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]    Compiling serde_derive v1.0.105
[INFO] [stderr]    Compiling snafu-derive v0.6.3
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]     Checking snafu v0.6.0
[INFO] [stderr]    Compiling hts-sys v1.10.2
[INFO] [stderr]     Checking bio-types v0.6.0
[INFO] [stderr]     Checking bincode v1.2.1
[INFO] [stderr]     Checking rust-htslib v0.29.0
[INFO] [stderr]     Checking fmmap v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `std::str::Chars`
[INFO] [stdout]  --> src/main.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use std::str::Chars;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::iter::Rev`
[INFO] [stdout]  --> src/main.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::iter::Rev;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Aux`
[INFO] [stdout]   --> src/main.rs:12:45
[INFO] [stdout]    |
[INFO] [stdout] 12 | use rust_htslib::bam::record::{CigarString, Aux, Cigar};
[INFO] [stdout]    |                                             ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::convert::TryFrom`
[INFO] [stdout]   --> src/main.rs:14:5
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::convert::TryFrom;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `thread`, `time`
[INFO] [stdout]   --> src/main.rs:15:11
[INFO] [stdout]    |
[INFO] [stdout] 15 | use std::{thread, time};
[INFO] [stdout]    |           ^^^^^^  ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::str::Chars`
[INFO] [stdout]  --> src/main.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use std::str::Chars;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::iter::Rev`
[INFO] [stdout]  --> src/main.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::iter::Rev;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Aux`
[INFO] [stdout]   --> src/main.rs:12:45
[INFO] [stdout]    |
[INFO] [stdout] 12 | use rust_htslib::bam::record::{CigarString, Aux, Cigar};
[INFO] [stdout]    |                                             ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::convert::TryFrom`
[INFO] [stdout]   --> src/main.rs:14:5
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::convert::TryFrom;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `thread`, `time`
[INFO] [stdout]   --> src/main.rs:15:11
[INFO] [stdout]    |
[INFO] [stdout] 15 | use std::{thread, time};
[INFO] [stdout]    |           ^^^^^^  ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary trailing semicolon
[INFO] [stdout]    --> src/main.rs:356:3
[INFO] [stdout]     |
[INFO] [stdout] 356 |     };
[INFO] [stdout]     |      ^ help: remove this semicolon
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(redundant_semicolons)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary trailing semicolon
[INFO] [stdout]    --> src/main.rs:356:3
[INFO] [stdout]     |
[INFO] [stdout] 356 |     };
[INFO] [stdout]     |      ^ help: remove this semicolon
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(redundant_semicolons)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:110:7
[INFO] [stdout]     |
[INFO] [stdout] 110 |         let mut c1 = remaining_query.next().unwrap();
[INFO] [stdout]     |             ----^^
[INFO] [stdout]     |             |
[INFO] [stdout]     |             help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:110:7
[INFO] [stdout]     |
[INFO] [stdout] 110 |         let mut c1 = remaining_query.next().unwrap();
[INFO] [stdout]     |             ----^^
[INFO] [stdout]     |             |
[INFO] [stdout]     |             help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `seed_pos`
[INFO] [stdout]    --> src/main.rs:392:7
[INFO] [stdout]     |
[INFO] [stdout] 392 |         let seed_pos = 0;
[INFO] [stdout]     |             ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_seed_pos`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `seed_pos`
[INFO] [stdout]    --> src/main.rs:392:7
[INFO] [stdout]     |
[INFO] [stdout] 392 |         let seed_pos = 0;
[INFO] [stdout]     |             ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_seed_pos`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `seqs`
[INFO] [stdout]    --> src/main.rs:516:16
[INFO] [stdout]     |
[INFO] [stdout] 516 | let (names, _, seqs, quals, cigars) = gold();
[INFO] [stdout]     |                ^^^^ help: if this is intentional, prefix it with an underscore: `_seqs`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `quals`
[INFO] [stdout]    --> src/main.rs:516:22
[INFO] [stdout]     |
[INFO] [stdout] 516 | let (names, _, seqs, quals, cigars) = gold();
[INFO] [stdout]     |                      ^^^^^ help: if this is intentional, prefix it with an underscore: `_quals`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `cigars`
[INFO] [stdout]    --> src/main.rs:516:29
[INFO] [stdout]     |
[INFO] [stdout] 516 | let (names, _, seqs, quals, cigars) = gold();
[INFO] [stdout]     |                             ^^^^^^ help: if this is intentional, prefix it with an underscore: `_cigars`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `name`
[INFO] [stdout]    --> src/main.rs:532:17
[INFO] [stdout]     |
[INFO] [stdout] 532 |             for name in names.iter() {
[INFO] [stdout]     |                 ^^^^ help: if this is intentional, prefix it with an underscore: `_name`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `sam`
[INFO] [stdout]    --> src/main.rs:548:13
[INFO] [stdout]     |
[INFO] [stdout] 548 |     let mut sam = Writer::from_path("test123.sam", &header, Format::SAM);
[INFO] [stdout]     |             ^^^ help: if this is intentional, prefix it with an underscore: `_sam`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:659:6
[INFO] [stdout]     |
[INFO] [stdout] 659 |     let mut sequence = 
[INFO] [stdout]     |         ----^^^^^^^^
[INFO] [stdout]     |         |
[INFO] [stdout]     |         help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:665:11
[INFO] [stdout]     |
[INFO] [stdout] 665 |                         let mut sequence = fs::read_to_string(input_file)
[INFO] [stdout]     |                             ----^^^^^^^^
[INFO] [stdout]     |                             |
[INFO] [stdout]     |                             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:669:11
[INFO] [stdout]     |
[INFO] [stdout] 669 |                         let mut split = sequence.split("\n");
[INFO] [stdout]     |                             ----^^^^^
[INFO] [stdout]     |                             |
[INFO] [stdout]     |                             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:548:9
[INFO] [stdout]     |
[INFO] [stdout] 548 |     let mut sam = Writer::from_path("test123.sam", &header, Format::SAM);
[INFO] [stdout]     |         ----^^^
[INFO] [stdout]     |         |
[INFO] [stdout]     |         help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:792:6
[INFO] [stdout]     |
[INFO] [stdout] 792 |     let mut sequence = 
[INFO] [stdout]     |         ----^^^^^^^^
[INFO] [stdout]     |         |
[INFO] [stdout]     |         help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:796:9
[INFO] [stdout]     |
[INFO] [stdout] 796 |                 let mut sequence = fs::read_to_string(input_file)
[INFO] [stdout]     |                     ----^^^^^^^^
[INFO] [stdout]     |                     |
[INFO] [stdout]     |                     help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:800:9
[INFO] [stdout]     |
[INFO] [stdout] 800 |                 let mut split = sequence.split("\n");
[INFO] [stdout]     |                     ----^^^^^
[INFO] [stdout]     |                     |
[INFO] [stdout]     |                     help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:659:6
[INFO] [stdout]     |
[INFO] [stdout] 659 |     let mut sequence = 
[INFO] [stdout]     |         ----^^^^^^^^
[INFO] [stdout]     |         |
[INFO] [stdout]     |         help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:665:11
[INFO] [stdout]     |
[INFO] [stdout] 665 |                         let mut sequence = fs::read_to_string(input_file)
[INFO] [stdout]     |                             ----^^^^^^^^
[INFO] [stdout]     |                             |
[INFO] [stdout]     |                             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:669:11
[INFO] [stdout]     |
[INFO] [stdout] 669 |                         let mut split = sequence.split("\n");
[INFO] [stdout]     |                             ----^^^^^
[INFO] [stdout]     |                             |
[INFO] [stdout]     |                             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:792:6
[INFO] [stdout]     |
[INFO] [stdout] 792 |     let mut sequence = 
[INFO] [stdout]     |         ----^^^^^^^^
[INFO] [stdout]     |         |
[INFO] [stdout]     |         help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:796:9
[INFO] [stdout]     |
[INFO] [stdout] 796 |                 let mut sequence = fs::read_to_string(input_file)
[INFO] [stdout]     |                     ----^^^^^^^^
[INFO] [stdout]     |                     |
[INFO] [stdout]     |                     help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:800:9
[INFO] [stdout]     |
[INFO] [stdout] 800 |                 let mut split = sequence.split("\n");
[INFO] [stdout]     |                     ----^^^^^
[INFO] [stdout]     |                     |
[INFO] [stdout]     |                     help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `name` and `id` are never read
[INFO] [stdout]   --> src/main.rs:62:2
[INFO] [stdout]    |
[INFO] [stdout] 61 | struct GenRead{
[INFO] [stdout]    |        ------- fields in this struct
[INFO] [stdout] 62 |     name: String,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 63 |     id : u32,
[INFO] [stdout]    |     ^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `print_2d_vec` is never used
[INFO] [stdout]    --> src/main.rs:193:4
[INFO] [stdout]     |
[INFO] [stdout] 193 | fn print_2d_vec<T : Debug>(matrix : &Vec<Vec<T>>){
[INFO] [stdout]     |    ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `fitting_alignment` is never used
[INFO] [stdout]    --> src/main.rs:203:4
[INFO] [stdout]     |
[INFO] [stdout] 203 | fn fitting_alignment(x : &str, y : &str) -> Vec<Alignment> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `add` is never used
[INFO] [stdout]    --> src/main.rs:450:4
[INFO] [stdout]     |
[INFO] [stdout] 450 | fn add(a : &mut Vec<i32>){
[INFO] [stdout]     |    ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `gold` is never used
[INFO] [stdout]    --> src/main.rs:459:4
[INFO] [stdout]     |
[INFO] [stdout] 459 | fn gold() -> (
[INFO] [stdout]     |    ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]   --> src/main.rs:50:10
[INFO] [stdout]    |
[INFO] [stdout] 50 | #[derive(Serialize, Deserialize, Debug)]
[INFO] [stdout]    |          ^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: move this `impl` block outside the of the current constant `_IMPL_SERIALIZE_FOR_FmIndex`
[INFO] [stdout]    = note: an `impl` definition is non-local if it is nested inside an item and neither the type nor the trait are at the same nesting level as the `impl` block
[INFO] [stdout]    = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]    = note: requested on the command line with `-D non-local-definitions`
[INFO] [stdout]    = note: this error originates in the derive macro `Serialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]   --> src/main.rs:50:21
[INFO] [stdout]    |
[INFO] [stdout] 50 | #[derive(Serialize, Deserialize, Debug)]
[INFO] [stdout]    |                     ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: move this `impl` block outside the of the current constant `_IMPL_DESERIALIZE_FOR_FmIndex`
[INFO] [stdout]    = note: an `impl` definition is non-local if it is nested inside an item and neither the type nor the trait are at the same nesting level as the `impl` block
[INFO] [stdout]    = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]    = note: this error originates in the derive macro `Deserialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `CIGAR` should have a snake case name
[INFO] [stdout]   --> src/main.rs:70:2
[INFO] [stdout]    |
[INFO] [stdout] 70 |     CIGAR : Vec<Cigar>,
[INFO] [stdout]    |     ^^^^^ help: convert the identifier to snake case: `cigar`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `name` and `id` are never read
[INFO] [stdout]   --> src/main.rs:62:2
[INFO] [stdout]    |
[INFO] [stdout] 61 | struct GenRead{
[INFO] [stdout]    |        ------- fields in this struct
[INFO] [stdout] 62 |     name: String,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 63 |     id : u32,
[INFO] [stdout]    |     ^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `print_2d_vec` is never used
[INFO] [stdout]    --> src/main.rs:193:4
[INFO] [stdout]     |
[INFO] [stdout] 193 | fn print_2d_vec<T : Debug>(matrix : &Vec<Vec<T>>){
[INFO] [stdout]     |    ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `fitting_alignment` is never used
[INFO] [stdout]    --> src/main.rs:203:4
[INFO] [stdout]     |
[INFO] [stdout] 203 | fn fitting_alignment(x : &str, y : &str) -> Vec<Alignment> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]   --> src/main.rs:50:10
[INFO] [stdout]    |
[INFO] [stdout] 50 | #[derive(Serialize, Deserialize, Debug)]
[INFO] [stdout]    |          ^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: move this `impl` block outside the of the current constant `_IMPL_SERIALIZE_FOR_FmIndex`
[INFO] [stdout]    = note: an `impl` definition is non-local if it is nested inside an item and neither the type nor the trait are at the same nesting level as the `impl` block
[INFO] [stdout]    = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]    = note: requested on the command line with `-D non-local-definitions`
[INFO] [stdout]    = note: this error originates in the derive macro `Serialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]   --> src/main.rs:50:21
[INFO] [stdout]    |
[INFO] [stdout] 50 | #[derive(Serialize, Deserialize, Debug)]
[INFO] [stdout]    |                     ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: move this `impl` block outside the of the current constant `_IMPL_DESERIALIZE_FOR_FmIndex`
[INFO] [stdout]    = note: an `impl` definition is non-local if it is nested inside an item and neither the type nor the trait are at the same nesting level as the `impl` block
[INFO] [stdout]    = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]    = note: this error originates in the derive macro `Deserialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `CIGAR` should have a snake case name
[INFO] [stdout]   --> src/main.rs:70:2
[INFO] [stdout]    |
[INFO] [stdout] 70 |     CIGAR : Vec<Cigar>,
[INFO] [stdout]    |     ^^^^^ help: convert the identifier to snake case: `cigar`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `Result` that must be used
[INFO] [stdout]    --> src/main.rs:368:2
[INFO] [stdout]     |
[INFO] [stdout] 368 |     file.read_to_end(&mut data);
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]     = note: `#[warn(unused_must_use)]` on by default
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]     |
[INFO] [stdout] 368 |     let _ = file.read_to_end(&mut data);
[INFO] [stdout]     |     +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `gap` should have an upper case name
[INFO] [stdout]    --> src/main.rs:384:8
[INFO] [stdout]     |
[INFO] [stdout] 384 |     const gap : usize = 5;
[INFO] [stdout]     |           ^^^ help: convert the identifier to upper case: `GAP`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(non_upper_case_globals)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `L_col` should have a snake case name
[INFO] [stdout]    --> src/main.rs:711:10
[INFO] [stdout]     |
[INFO] [stdout] 711 |     let mut L_col = Vec::<char>::new();
[INFO] [stdout]     |             ^^^^^ help: convert the identifier to snake case: `l_col`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F_col` should have a snake case name
[INFO] [stdout]    --> src/main.rs:712:10
[INFO] [stdout]     |
[INFO] [stdout] 712 |     let mut F_col = Vec::<char>::new();
[INFO] [stdout]     |             ^^^^^ help: convert the identifier to snake case (notice the capitalization): `f_col`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F_col_compressed` should have a snake case name
[INFO] [stdout]    --> src/main.rs:752:10
[INFO] [stdout]     |
[INFO] [stdout] 752 |     let mut F_col_compressed = HashMap::<char, usize>::new();
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `f_col_compressed`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `Result` that must be used
[INFO] [stdout]    --> src/main.rs:368:2
[INFO] [stdout]     |
[INFO] [stdout] 368 |     file.read_to_end(&mut data);
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]     = note: `#[warn(unused_must_use)]` on by default
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]     |
[INFO] [stdout] 368 |     let _ = file.read_to_end(&mut data);
[INFO] [stdout]     |     +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `gap` should have an upper case name
[INFO] [stdout]    --> src/main.rs:384:8
[INFO] [stdout]     |
[INFO] [stdout] 384 |     const gap : usize = 5;
[INFO] [stdout]     |           ^^^ help: convert the identifier to upper case: `GAP`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(non_upper_case_globals)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `L_col` should have a snake case name
[INFO] [stdout]    --> src/main.rs:711:10
[INFO] [stdout]     |
[INFO] [stdout] 711 |     let mut L_col = Vec::<char>::new();
[INFO] [stdout]     |             ^^^^^ help: convert the identifier to snake case: `l_col`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F_col` should have a snake case name
[INFO] [stdout]    --> src/main.rs:712:10
[INFO] [stdout]     |
[INFO] [stdout] 712 |     let mut F_col = Vec::<char>::new();
[INFO] [stdout]     |             ^^^^^ help: convert the identifier to snake case (notice the capitalization): `f_col`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F_col_compressed` should have a snake case name
[INFO] [stdout]    --> src/main.rs:752:10
[INFO] [stdout]     |
[INFO] [stdout] 752 |     let mut F_col_compressed = HashMap::<char, usize>::new();
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `f_col_compressed`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 2 previous errors; 25 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 2 previous errors; 29 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `fmmap` (bin "fmmap") due to 3 previous errors; 25 warnings emitted
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: could not compile `fmmap` (bin "fmmap" test) due to 3 previous errors; 29 warnings emitted
[INFO] running `Command { std: "docker" "inspect" "cc70f5dae66512954ea74002c528cd80954440a3c470c78e27dcf09f7914342b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "cc70f5dae66512954ea74002c528cd80954440a3c470c78e27dcf09f7914342b", kill_on_drop: false }`
[INFO] [stdout] cc70f5dae66512954ea74002c528cd80954440a3c470c78e27dcf09f7914342b
