[INFO] cloning repository https://github.com/avalind/ossler
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/avalind/ossler" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Favalind%2Fossler", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Favalind%2Fossler'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 1800a6afdb9015433a8a92073db81faa9525e667
[INFO] checking avalind/ossler against master#5518eaa946291f00471af8b254b2a1715f234882 for pr-120393-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Favalind%2Fossler" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/avalind/ossler on toolchain 5518eaa946291f00471af8b254b2a1715f234882
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+5518eaa946291f00471af8b254b2a1715f234882" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/avalind/ossler
[INFO] finished tweaking git repo https://github.com/avalind/ossler
[INFO] tweaked toml for git repo https://github.com/avalind/ossler written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/avalind/ossler already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+5518eaa946291f00471af8b254b2a1715f234882" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded derive-new v0.5.9
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+5518eaa946291f00471af8b254b2a1715f234882" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] d542192d49218d32fd836b342ee38095f42137d2bf701fd6aab60f986c89e212
[INFO] running `Command { std: "docker" "start" "-a" "d542192d49218d32fd836b342ee38095f42137d2bf701fd6aab60f986c89e212", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "d542192d49218d32fd836b342ee38095f42137d2bf701fd6aab60f986c89e212", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d542192d49218d32fd836b342ee38095f42137d2bf701fd6aab60f986c89e212", kill_on_drop: false }`
[INFO] [stdout] d542192d49218d32fd836b342ee38095f42137d2bf701fd6aab60f986c89e212
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+5518eaa946291f00471af8b254b2a1715f234882" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] e3c4cd5e1ef67f9aa0e5e787a97edf938f28305bfa011a87522bd3371f5fd115
[INFO] running `Command { std: "docker" "start" "-a" "e3c4cd5e1ef67f9aa0e5e787a97edf938f28305bfa011a87522bd3371f5fd115", kill_on_drop: false }`
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[INFO] [stderr]    Compiling pkg-config v0.3.25
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[INFO] [stderr]     Checking tinyvec_macros v0.1.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling serde_derive v1.0.136
[INFO] [stderr]    Compiling rustversion v1.0.6
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling quote v1.0.18
[INFO] [stderr]    Compiling aho-corasick v0.7.18
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[INFO] [stderr]    Compiling cc v1.0.73
[INFO] [stderr]     Checking tinyvec v1.5.1
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[INFO] [stderr]    Compiling openssl-src v111.18.0+1.1.1n
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[INFO] [stderr]    Compiling parking_lot_core v0.8.5
[INFO] [stderr]     Checking unicode-normalization v0.1.19
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[INFO] [stderr]    Compiling curl-sys v0.4.53+curl-7.82.0
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[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking instant v0.1.12
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[INFO] [stderr]     Checking percent-encoding v2.1.0
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking scopeguard v1.1.0
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[INFO] [stderr]     Checking idna v0.2.3
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[INFO] [stderr]     Checking num-complex v0.4.0
[INFO] [stderr]    Compiling anyhow v1.0.56
[INFO] [stderr]     Checking regex-automata v0.1.10
[INFO] [stderr]    Compiling thiserror-impl v1.0.30
[INFO] [stderr]    Compiling strum_macros v0.23.1
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling hdf5-sys v0.8.1
[INFO] [stderr]     Checking ascii v1.0.0
[INFO] [stderr]    Compiling hdf5 v0.8.1
[INFO] [stderr]     Checking ndarray v0.15.4
[INFO] [stderr]    Compiling hdf5-derive v0.8.1
[INFO] [stderr]     Checking thiserror v1.0.30
[INFO] [stderr]     Checking url v2.2.2
[INFO] [stderr]     Checking parking_lot v0.11.2
[INFO] [stderr]     Checking bio-types v0.12.1
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking either v1.6.1
[INFO] [stderr]    Compiling paste v1.0.7
[INFO] [stderr]     Checking ryu v1.0.9
[INFO] [stderr]     Checking itoa v0.4.8
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking byteorder v1.4.3
[INFO] [stderr]     Checking itertools v0.10.3
[INFO] [stderr]     Checking bstr v0.2.17
[INFO] [stderr]     Checking csv v1.1.6
[INFO] [stderr]     Checking rust-htslib v0.38.2
[INFO] [stderr]     Checking ossler v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]  --> src/main.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 | use std::collections::HashMap;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `*`, `TypeDescriptor as TD`
[INFO] [stdout]  --> src/main.rs:6:19
[INFO] [stdout]   |
[INFO] [stdout] 6 | use hdf5::types::{TypeDescriptor as TD, *};
[INFO] [stdout]   |                   ^^^^^^^^^^^^^^^^^^^^  ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Datatype`, `File`, `H5Type`
[INFO] [stdout]  --> src/main.rs:7:12
[INFO] [stdout]   |
[INFO] [stdout] 7 | use hdf5::{File, H5Type, Datatype};
[INFO] [stdout]   |            ^^^^  ^^^^^^  ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `ndarray::Array1`
[INFO] [stdout]  --> src/main.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use ndarray::Array1;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `csv::ReaderBuilder`
[INFO] [stdout]  --> src/main.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use csv::ReaderBuilder;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]  --> src/record/snp.rs:1:5
[INFO] [stdout]   |
[INFO] [stdout] 1 | use std::collections::HashMap;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `ndarray::Array1`
[INFO] [stdout]  --> src/record/snp.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 | use ndarray::Array1;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `File`
[INFO] [stdout]  --> src/record/oschp.rs:2:12
[INFO] [stdout]   |
[INFO] [stdout] 2 | use hdf5::{File, H5Type};
[INFO] [stdout]   |            ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `hdf5::types::VarLenAscii`
[INFO] [stdout]  --> src/record/oschp.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 | use hdf5::types::VarLenAscii;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]  --> src/main.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 | use std::collections::HashMap;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `serde::Deserialize`
[INFO] [stdout]  --> src/record/manifest.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 | use serde::Deserialize;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `*`, `TypeDescriptor as TD`
[INFO] [stdout]  --> src/main.rs:6:19
[INFO] [stdout]   |
[INFO] [stdout] 6 | use hdf5::types::{TypeDescriptor as TD, *};
[INFO] [stdout]   |                   ^^^^^^^^^^^^^^^^^^^^  ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Datatype`, `File`, `H5Type`
[INFO] [stdout]  --> src/main.rs:7:12
[INFO] [stdout]   |
[INFO] [stdout] 7 | use hdf5::{File, H5Type, Datatype};
[INFO] [stdout]   |            ^^^^  ^^^^^^  ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `ndarray::Array1`
[INFO] [stdout]  --> src/main.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use ndarray::Array1;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `csv::ReaderBuilder`
[INFO] [stdout]  --> src/main.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use csv::ReaderBuilder;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]  --> src/record/snp.rs:1:5
[INFO] [stdout]   |
[INFO] [stdout] 1 | use std::collections::HashMap;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `ndarray::Array1`
[INFO] [stdout]  --> src/record/snp.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 | use ndarray::Array1;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `File`
[INFO] [stdout]  --> src/record/oschp.rs:2:12
[INFO] [stdout]   |
[INFO] [stdout] 2 | use hdf5::{File, H5Type};
[INFO] [stdout]   |            ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `hdf5::types::VarLenAscii`
[INFO] [stdout]  --> src/record/oschp.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 | use hdf5::types::VarLenAscii;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `serde::Deserialize`
[INFO] [stdout]  --> src/record/manifest.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 | use serde::Deserialize;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `segments`
[INFO] [stdout]   --> src/main.rs:27:9
[INFO] [stdout]    |
[INFO] [stdout] 27 |     let segments = record::oschp::CopyNumberSegment::from_oschp_file(&handle)?;
[INFO] [stdout]    |         ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_segments`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `loh`
[INFO] [stdout]   --> src/main.rs:28:9
[INFO] [stdout]    |
[INFO] [stdout] 28 |     let loh = record::oschp::LOHSegment::from_oschp_file(&handle)?;   
[INFO] [stdout]    |         ^^^ help: if this is intentional, prefix it with an underscore: `_loh`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `tab`
[INFO] [stdout]   --> src/main.rs:30:9
[INFO] [stdout]    |
[INFO] [stdout] 30 |     let tab = transform::utils::build_chrom_table(&chroms);
[INFO] [stdout]    |         ^^^ help: if this is intentional, prefix it with an underscore: `_tab`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `segments`
[INFO] [stdout]   --> src/main.rs:27:9
[INFO] [stdout]    |
[INFO] [stdout] 27 |     let segments = record::oschp::CopyNumberSegment::from_oschp_file(&handle)?;
[INFO] [stdout]    |         ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_segments`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `loh`
[INFO] [stdout]   --> src/main.rs:28:9
[INFO] [stdout]    |
[INFO] [stdout] 28 |     let loh = record::oschp::LOHSegment::from_oschp_file(&handle)?;   
[INFO] [stdout]    |         ^^^ help: if this is intentional, prefix it with an underscore: `_loh`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `tab`
[INFO] [stdout]   --> src/main.rs:30:9
[INFO] [stdout]    |
[INFO] [stdout] 30 |     let tab = transform::utils::build_chrom_table(&chroms);
[INFO] [stdout]    |         ^^^ help: if this is intentional, prefix it with an underscore: `_tab`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple fields are never read
[INFO] [stdout]   --> src/record/snp.rs:6:5
[INFO] [stdout]    |
[INFO] [stdout] 5  | pub struct Marker {
[INFO] [stdout]    |            ------ fields in this struct
[INFO] [stdout] 6  |     chrom: u8,
[INFO] [stdout]    |     ^^^^^
[INFO] [stdout] 7  |     position: u32,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 8  |     lrr: f32,
[INFO] [stdout]    |     ^^^
[INFO] [stdout] 9  |     weighted_lrr: f32,
[INFO] [stdout]    |     ^^^^^^^^^^^^
[INFO] [stdout] 10 |     allelic_diff: f32,
[INFO] [stdout]    |     ^^^^^^^^^^^^
[INFO] [stdout] 11 |     baf: f32,
[INFO] [stdout]    |     ^^^
[INFO] [stdout] 12 |     call: u8,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 13 |     conf: f32,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 14 |     a_signal: f32,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 15 |     b_signal: f32,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 16 |     probe_name: String,
[INFO] [stdout]    |     ^^^^^^^^^^
[INFO] [stdout] 17 |     a_allele: u8,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 18 |     b_allele: u8,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Marker` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated items `new` and `to_vcf_record` are never used
[INFO] [stdout]   --> src/record/snp.rs:22:12
[INFO] [stdout]    |
[INFO] [stdout] 21 | impl Marker {
[INFO] [stdout]    | ----------- associated items in this implementation
[INFO] [stdout] 22 |     pub fn new() -> Marker {
[INFO] [stdout]    |            ^^^
[INFO] [stdout] ...
[INFO] [stdout] 65 |     pub fn to_vcf_record(&self) {
[INFO] [stdout]    |            ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple fields are never read
[INFO] [stdout]   --> src/record/snp.rs:6:5
[INFO] [stdout]    |
[INFO] [stdout] 5  | pub struct Marker {
[INFO] [stdout]    |            ------ fields in this struct
[INFO] [stdout] 6  |     chrom: u8,
[INFO] [stdout]    |     ^^^^^
[INFO] [stdout] 7  |     position: u32,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 8  |     lrr: f32,
[INFO] [stdout]    |     ^^^
[INFO] [stdout] 9  |     weighted_lrr: f32,
[INFO] [stdout]    |     ^^^^^^^^^^^^
[INFO] [stdout] 10 |     allelic_diff: f32,
[INFO] [stdout]    |     ^^^^^^^^^^^^
[INFO] [stdout] 11 |     baf: f32,
[INFO] [stdout]    |     ^^^
[INFO] [stdout] 12 |     call: u8,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 13 |     conf: f32,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 14 |     a_signal: f32,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 15 |     b_signal: f32,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 16 |     probe_name: String,
[INFO] [stdout]    |     ^^^^^^^^^^
[INFO] [stdout] 17 |     a_allele: u8,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 18 |     b_allele: u8,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Marker` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated items `new` and `to_vcf_record` are never used
[INFO] [stdout]   --> src/record/snp.rs:22:12
[INFO] [stdout]    |
[INFO] [stdout] 21 | impl Marker {
[INFO] [stdout]    | ----------- associated items in this implementation
[INFO] [stdout] 22 |     pub fn new() -> Marker {
[INFO] [stdout]    |            ^^^
[INFO] [stdout] ...
[INFO] [stdout] 65 |     pub fn to_vcf_record(&self) {
[INFO] [stdout]    |            ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 15 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 15 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 30.88s
[INFO] running `Command { std: "docker" "inspect" "e3c4cd5e1ef67f9aa0e5e787a97edf938f28305bfa011a87522bd3371f5fd115", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e3c4cd5e1ef67f9aa0e5e787a97edf938f28305bfa011a87522bd3371f5fd115", kill_on_drop: false }`
[INFO] [stdout] e3c4cd5e1ef67f9aa0e5e787a97edf938f28305bfa011a87522bd3371f5fd115
[INFO] checking avalind/ossler against try#7622c0f807a4e13c4db886a1681bf343795692df+rustflags=-Dnon_local_definitions for pr-120393-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Favalind%2Fossler" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/avalind/ossler on toolchain 7622c0f807a4e13c4db886a1681bf343795692df
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+7622c0f807a4e13c4db886a1681bf343795692df" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/avalind/ossler
[INFO] finished tweaking git repo https://github.com/avalind/ossler
[INFO] tweaked toml for git repo https://github.com/avalind/ossler written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/avalind/ossler already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+7622c0f807a4e13c4db886a1681bf343795692df" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+7622c0f807a4e13c4db886a1681bf343795692df" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 464807757bacecd94f73dcf6bb7f662bd768f501c7ab2f304955813f73e66425
[INFO] running `Command { std: "docker" "start" "-a" "464807757bacecd94f73dcf6bb7f662bd768f501c7ab2f304955813f73e66425", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "464807757bacecd94f73dcf6bb7f662bd768f501c7ab2f304955813f73e66425", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "464807757bacecd94f73dcf6bb7f662bd768f501c7ab2f304955813f73e66425", kill_on_drop: false }`
[INFO] [stdout] 464807757bacecd94f73dcf6bb7f662bd768f501c7ab2f304955813f73e66425
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Dnon_local_definitions" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+7622c0f807a4e13c4db886a1681bf343795692df" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 701a6122b84a23383cc07898bb36b0631b80dc86d112d2d0b58058bed5de0e60
[INFO] running `Command { std: "docker" "start" "-a" "701a6122b84a23383cc07898bb36b0631b80dc86d112d2d0b58058bed5de0e60", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.123
[INFO] [stderr]    Compiling pkg-config v0.3.25
[INFO] [stderr]    Compiling memchr v2.4.1
[INFO] [stderr]    Compiling proc-macro2 v1.0.37
[INFO] [stderr]    Compiling unicode-xid v0.2.2
[INFO] [stderr]    Compiling syn v1.0.91
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling regex-syntax v0.6.25
[INFO] [stderr]    Compiling libloading v0.7.3
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling rustversion v1.0.6
[INFO] [stderr]     Checking tinyvec_macros v0.1.0
[INFO] [stderr]    Compiling serde_derive v1.0.136
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling quote v1.0.18
[INFO] [stderr]    Compiling jobserver v0.1.24
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking tinyvec v1.5.1
[INFO] [stderr]    Compiling cc v1.0.73
[INFO] [stderr]    Compiling lock_api v0.4.7
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling unicode-segmentation v1.9.0
[INFO] [stderr]    Compiling parking_lot_core v0.8.5
[INFO] [stderr]    Compiling openssl-src v111.18.0+1.1.1n
[INFO] [stderr]    Compiling cmake v0.1.48
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling regex v1.5.5
[INFO] [stderr]     Checking matches v0.1.9
[INFO] [stderr]    Compiling serde v1.0.136
[INFO] [stderr]     Checking unicode-normalization v0.1.19
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling openssl-sys v0.9.72
[INFO] [stderr]    Compiling libz-sys v1.1.5
[INFO] [stderr]    Compiling curl-sys v0.4.53+curl-7.82.0
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling hts-sys v2.0.2
[INFO] [stderr]     Checking instant v0.1.12
[INFO] [stderr]     Checking unicode-bidi v0.3.7
[INFO] [stderr]     Checking smallvec v1.8.0
[INFO] [stderr]    Compiling hdf5-types v0.8.1
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking scopeguard v1.1.0
[INFO] [stderr]     Checking percent-encoding v2.1.0
[INFO] [stderr]     Checking form_urlencoded v1.0.1
[INFO] [stderr]     Checking matrixmultiply v0.3.2
[INFO] [stderr]     Checking idna v0.2.3
[INFO] [stderr]     Checking num-complex v0.4.0
[INFO] [stderr]    Compiling hdf5 v0.8.1
[INFO] [stderr]    Compiling anyhow v1.0.56
[INFO] [stderr]     Checking ascii v1.0.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.30
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.23.1
[INFO] [stderr]    Compiling hdf5-sys v0.8.1
[INFO] [stderr]     Checking regex-automata v0.1.10
[INFO] [stderr]    Compiling hdf5-derive v0.8.1
[INFO] [stderr]     Checking ndarray v0.15.4
[INFO] [stderr]     Checking thiserror v1.0.30
[INFO] [stderr]     Checking url v2.2.2
[INFO] [stderr]     Checking parking_lot v0.11.2
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking ryu v1.0.9
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]    Compiling paste v1.0.7
[INFO] [stderr]     Checking itoa v0.4.8
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking byteorder v1.4.3
[INFO] [stderr]     Checking bio-types v0.12.1
[INFO] [stderr]     Checking either v1.6.1
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking itertools v0.10.3
[INFO] [stderr]     Checking bstr v0.2.17
[INFO] [stderr]     Checking csv v1.1.6
[INFO] [stderr]     Checking rust-htslib v0.38.2
[INFO] [stderr]     Checking ossler v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]  --> src/main.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 | use std::collections::HashMap;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `*`, `TypeDescriptor as TD`
[INFO] [stdout]  --> src/main.rs:6:19
[INFO] [stdout]   |
[INFO] [stdout] 6 | use hdf5::types::{TypeDescriptor as TD, *};
[INFO] [stdout]   |                   ^^^^^^^^^^^^^^^^^^^^  ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Datatype`, `File`, `H5Type`
[INFO] [stdout]  --> src/main.rs:7:12
[INFO] [stdout]   |
[INFO] [stdout] 7 | use hdf5::{File, H5Type, Datatype};
[INFO] [stdout]   |            ^^^^  ^^^^^^  ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `ndarray::Array1`
[INFO] [stdout]  --> src/main.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use ndarray::Array1;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `csv::ReaderBuilder`
[INFO] [stdout]  --> src/main.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use csv::ReaderBuilder;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]  --> src/record/snp.rs:1:5
[INFO] [stdout]   |
[INFO] [stdout] 1 | use std::collections::HashMap;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `ndarray::Array1`
[INFO] [stdout]  --> src/record/snp.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 | use ndarray::Array1;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `File`
[INFO] [stdout]  --> src/record/oschp.rs:2:12
[INFO] [stdout]   |
[INFO] [stdout] 2 | use hdf5::{File, H5Type};
[INFO] [stdout]   |            ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `hdf5::types::VarLenAscii`
[INFO] [stdout]  --> src/record/oschp.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 | use hdf5::types::VarLenAscii;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `serde::Deserialize`
[INFO] [stdout]  --> src/record/manifest.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 | use serde::Deserialize;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]  --> src/main.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 | use std::collections::HashMap;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `*`, `TypeDescriptor as TD`
[INFO] [stdout]  --> src/main.rs:6:19
[INFO] [stdout]   |
[INFO] [stdout] 6 | use hdf5::types::{TypeDescriptor as TD, *};
[INFO] [stdout]   |                   ^^^^^^^^^^^^^^^^^^^^  ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Datatype`, `File`, `H5Type`
[INFO] [stdout]  --> src/main.rs:7:12
[INFO] [stdout]   |
[INFO] [stdout] 7 | use hdf5::{File, H5Type, Datatype};
[INFO] [stdout]   |            ^^^^  ^^^^^^  ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `ndarray::Array1`
[INFO] [stdout]  --> src/main.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use ndarray::Array1;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `csv::ReaderBuilder`
[INFO] [stdout]  --> src/main.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use csv::ReaderBuilder;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]  --> src/record/snp.rs:1:5
[INFO] [stdout]   |
[INFO] [stdout] 1 | use std::collections::HashMap;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `ndarray::Array1`
[INFO] [stdout]  --> src/record/snp.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 | use ndarray::Array1;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `File`
[INFO] [stdout]  --> src/record/oschp.rs:2:12
[INFO] [stdout]   |
[INFO] [stdout] 2 | use hdf5::{File, H5Type};
[INFO] [stdout]   |            ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `hdf5::types::VarLenAscii`
[INFO] [stdout]  --> src/record/oschp.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 | use hdf5::types::VarLenAscii;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `serde::Deserialize`
[INFO] [stdout]  --> src/record/manifest.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 | use serde::Deserialize;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `segments`
[INFO] [stdout]   --> src/main.rs:27:9
[INFO] [stdout]    |
[INFO] [stdout] 27 |     let segments = record::oschp::CopyNumberSegment::from_oschp_file(&handle)?;
[INFO] [stdout]    |         ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_segments`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `loh`
[INFO] [stdout]   --> src/main.rs:28:9
[INFO] [stdout]    |
[INFO] [stdout] 28 |     let loh = record::oschp::LOHSegment::from_oschp_file(&handle)?;   
[INFO] [stdout]    |         ^^^ help: if this is intentional, prefix it with an underscore: `_loh`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `tab`
[INFO] [stdout]   --> src/main.rs:30:9
[INFO] [stdout]    |
[INFO] [stdout] 30 |     let tab = transform::utils::build_chrom_table(&chroms);
[INFO] [stdout]    |         ^^^ help: if this is intentional, prefix it with an underscore: `_tab`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple fields are never read
[INFO] [stdout]   --> src/record/snp.rs:6:5
[INFO] [stdout]    |
[INFO] [stdout] 5  | pub struct Marker {
[INFO] [stdout]    |            ------ fields in this struct
[INFO] [stdout] 6  |     chrom: u8,
[INFO] [stdout]    |     ^^^^^
[INFO] [stdout] 7  |     position: u32,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 8  |     lrr: f32,
[INFO] [stdout]    |     ^^^
[INFO] [stdout] 9  |     weighted_lrr: f32,
[INFO] [stdout]    |     ^^^^^^^^^^^^
[INFO] [stdout] 10 |     allelic_diff: f32,
[INFO] [stdout]    |     ^^^^^^^^^^^^
[INFO] [stdout] 11 |     baf: f32,
[INFO] [stdout]    |     ^^^
[INFO] [stdout] 12 |     call: u8,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 13 |     conf: f32,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 14 |     a_signal: f32,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 15 |     b_signal: f32,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 16 |     probe_name: String,
[INFO] [stdout]    |     ^^^^^^^^^^
[INFO] [stdout] 17 |     a_allele: u8,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 18 |     b_allele: u8,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Marker` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated items `new` and `to_vcf_record` are never used
[INFO] [stdout]   --> src/record/snp.rs:22:12
[INFO] [stdout]    |
[INFO] [stdout] 21 | impl Marker {
[INFO] [stdout]    | ----------- associated items in this implementation
[INFO] [stdout] 22 |     pub fn new() -> Marker {
[INFO] [stdout]    |            ^^^
[INFO] [stdout] ...
[INFO] [stdout] 65 |     pub fn to_vcf_record(&self) {
[INFO] [stdout]    |            ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]  --> src/record/oschp.rs:9:10
[INFO] [stdout]   |
[INFO] [stdout] 9 | #[derive(H5Type, Clone, Debug, Copy)]
[INFO] [stdout]   |          ^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = help: move this `impl` block outside the of the current constant `_IMPL_H5TYPE_FOR_Call`
[INFO] [stdout]   = note: an `impl` definition is non-local if it is nested inside an item and neither the type nor the trait are at the same nesting level as the `impl` block
[INFO] [stdout]   = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]   = note: requested on the command line with `-D non-local-definitions`
[INFO] [stdout]   = note: this error originates in the derive macro `H5Type` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]   --> src/record/oschp.rs:29:10
[INFO] [stdout]    |
[INFO] [stdout] 29 | #[derive(H5Type, Clone, Debug, Copy)]
[INFO] [stdout]    |          ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: move this `impl` block outside the of the current constant `_IMPL_H5TYPE_FOR_CopyNumber`
[INFO] [stdout]    = note: an `impl` definition is non-local if it is nested inside an item and neither the type nor the trait are at the same nesting level as the `impl` block
[INFO] [stdout]    = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]    = note: this error originates in the derive macro `H5Type` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]   --> src/record/oschp.rs:47:10
[INFO] [stdout]    |
[INFO] [stdout] 47 | #[derive(H5Type, Clone, Debug, Copy)]
[INFO] [stdout]    |          ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: move this `impl` block outside the of the current constant `_IMPL_H5TYPE_FOR_AllelicData`
[INFO] [stdout]    = note: an `impl` definition is non-local if it is nested inside an item and neither the type nor the trait are at the same nesting level as the `impl` block
[INFO] [stdout]    = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]    = note: this error originates in the derive macro `H5Type` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]   --> src/record/oschp.rs:63:10
[INFO] [stdout]    |
[INFO] [stdout] 63 | #[derive(H5Type, Clone, Debug)]
[INFO] [stdout]    |          ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: move this `impl` block outside the of the current constant `_IMPL_H5TYPE_FOR_CopyNumberSegment`
[INFO] [stdout]    = note: an `impl` definition is non-local if it is nested inside an item and neither the type nor the trait are at the same nesting level as the `impl` block
[INFO] [stdout]    = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]    = note: this error originates in the derive macro `H5Type` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]   --> src/record/oschp.rs:84:10
[INFO] [stdout]    |
[INFO] [stdout] 84 | #[derive(H5Type, Clone, Debug)]
[INFO] [stdout]    |          ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: move this `impl` block outside the of the current constant `_IMPL_H5TYPE_FOR_LOHSegment`
[INFO] [stdout]    = note: an `impl` definition is non-local if it is nested inside an item and neither the type nor the trait are at the same nesting level as the `impl` block
[INFO] [stdout]    = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]    = note: this error originates in the derive macro `H5Type` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]    --> src/record/oschp.rs:104:10
[INFO] [stdout]     |
[INFO] [stdout] 104 | #[derive(H5Type, Clone, Debug)]
[INFO] [stdout]     |          ^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: move this `impl` block outside the of the current constant `_IMPL_H5TYPE_FOR_ChromosomeSummary`
[INFO] [stdout]     = note: an `impl` definition is non-local if it is nested inside an item and neither the type nor the trait are at the same nesting level as the `impl` block
[INFO] [stdout]     = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]     = note: this error originates in the derive macro `H5Type` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 6 previous errors; 15 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `ossler` (bin "ossler") due to 7 previous errors; 15 warnings emitted
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stdout] warning: unused variable: `segments`
[INFO] [stdout]   --> src/main.rs:27:9
[INFO] [stdout]    |
[INFO] [stdout] 27 |     let segments = record::oschp::CopyNumberSegment::from_oschp_file(&handle)?;
[INFO] [stdout]    |         ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_segments`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `loh`
[INFO] [stdout]   --> src/main.rs:28:9
[INFO] [stdout]    |
[INFO] [stdout] 28 |     let loh = record::oschp::LOHSegment::from_oschp_file(&handle)?;   
[INFO] [stdout]    |         ^^^ help: if this is intentional, prefix it with an underscore: `_loh`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `tab`
[INFO] [stdout]   --> src/main.rs:30:9
[INFO] [stdout]    |
[INFO] [stdout] 30 |     let tab = transform::utils::build_chrom_table(&chroms);
[INFO] [stdout]    |         ^^^ help: if this is intentional, prefix it with an underscore: `_tab`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple fields are never read
[INFO] [stdout]   --> src/record/snp.rs:6:5
[INFO] [stdout]    |
[INFO] [stdout] 5  | pub struct Marker {
[INFO] [stdout]    |            ------ fields in this struct
[INFO] [stdout] 6  |     chrom: u8,
[INFO] [stdout]    |     ^^^^^
[INFO] [stdout] 7  |     position: u32,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 8  |     lrr: f32,
[INFO] [stdout]    |     ^^^
[INFO] [stdout] 9  |     weighted_lrr: f32,
[INFO] [stdout]    |     ^^^^^^^^^^^^
[INFO] [stdout] 10 |     allelic_diff: f32,
[INFO] [stdout]    |     ^^^^^^^^^^^^
[INFO] [stdout] 11 |     baf: f32,
[INFO] [stdout]    |     ^^^
[INFO] [stdout] 12 |     call: u8,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 13 |     conf: f32,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 14 |     a_signal: f32,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 15 |     b_signal: f32,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 16 |     probe_name: String,
[INFO] [stdout]    |     ^^^^^^^^^^
[INFO] [stdout] 17 |     a_allele: u8,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 18 |     b_allele: u8,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Marker` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated items `new` and `to_vcf_record` are never used
[INFO] [stdout]   --> src/record/snp.rs:22:12
[INFO] [stdout]    |
[INFO] [stdout] 21 | impl Marker {
[INFO] [stdout]    | ----------- associated items in this implementation
[INFO] [stdout] 22 |     pub fn new() -> Marker {
[INFO] [stdout]    |            ^^^
[INFO] [stdout] ...
[INFO] [stdout] 65 |     pub fn to_vcf_record(&self) {
[INFO] [stdout]    |            ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]  --> src/record/oschp.rs:9:10
[INFO] [stdout]   |
[INFO] [stdout] 9 | #[derive(H5Type, Clone, Debug, Copy)]
[INFO] [stdout]   |          ^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = help: move this `impl` block outside the of the current constant `_IMPL_H5TYPE_FOR_Call`
[INFO] [stdout]   = note: an `impl` definition is non-local if it is nested inside an item and neither the type nor the trait are at the same nesting level as the `impl` block
[INFO] [stdout]   = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]   = note: requested on the command line with `-D non-local-definitions`
[INFO] [stdout]   = note: this error originates in the derive macro `H5Type` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]   --> src/record/oschp.rs:29:10
[INFO] [stdout]    |
[INFO] [stdout] 29 | #[derive(H5Type, Clone, Debug, Copy)]
[INFO] [stdout]    |          ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: move this `impl` block outside the of the current constant `_IMPL_H5TYPE_FOR_CopyNumber`
[INFO] [stdout]    = note: an `impl` definition is non-local if it is nested inside an item and neither the type nor the trait are at the same nesting level as the `impl` block
[INFO] [stdout]    = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]    = note: this error originates in the derive macro `H5Type` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]   --> src/record/oschp.rs:47:10
[INFO] [stdout]    |
[INFO] [stdout] 47 | #[derive(H5Type, Clone, Debug, Copy)]
[INFO] [stdout]    |          ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: move this `impl` block outside the of the current constant `_IMPL_H5TYPE_FOR_AllelicData`
[INFO] [stdout]    = note: an `impl` definition is non-local if it is nested inside an item and neither the type nor the trait are at the same nesting level as the `impl` block
[INFO] [stdout]    = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]    = note: this error originates in the derive macro `H5Type` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]   --> src/record/oschp.rs:63:10
[INFO] [stdout]    |
[INFO] [stdout] 63 | #[derive(H5Type, Clone, Debug)]
[INFO] [stdout]    |          ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: move this `impl` block outside the of the current constant `_IMPL_H5TYPE_FOR_CopyNumberSegment`
[INFO] [stdout]    = note: an `impl` definition is non-local if it is nested inside an item and neither the type nor the trait are at the same nesting level as the `impl` block
[INFO] [stdout]    = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]    = note: this error originates in the derive macro `H5Type` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]   --> src/record/oschp.rs:84:10
[INFO] [stdout]    |
[INFO] [stdout] 84 | #[derive(H5Type, Clone, Debug)]
[INFO] [stdout]    |          ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: move this `impl` block outside the of the current constant `_IMPL_H5TYPE_FOR_LOHSegment`
[INFO] [stdout]    = note: an `impl` definition is non-local if it is nested inside an item and neither the type nor the trait are at the same nesting level as the `impl` block
[INFO] [stdout]    = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]    = note: this error originates in the derive macro `H5Type` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]    --> src/record/oschp.rs:104:10
[INFO] [stdout]     |
[INFO] [stdout] 104 | #[derive(H5Type, Clone, Debug)]
[INFO] [stdout]     |          ^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: move this `impl` block outside the of the current constant `_IMPL_H5TYPE_FOR_ChromosomeSummary`
[INFO] [stdout]     = note: an `impl` definition is non-local if it is nested inside an item and neither the type nor the trait are at the same nesting level as the `impl` block
[INFO] [stdout]     = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]     = note: this error originates in the derive macro `H5Type` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 6 previous errors; 15 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `ossler` (bin "ossler" test) due to 7 previous errors; 15 warnings emitted
[INFO] running `Command { std: "docker" "inspect" "701a6122b84a23383cc07898bb36b0631b80dc86d112d2d0b58058bed5de0e60", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "701a6122b84a23383cc07898bb36b0631b80dc86d112d2d0b58058bed5de0e60", kill_on_drop: false }`
[INFO] [stdout] 701a6122b84a23383cc07898bb36b0631b80dc86d112d2d0b58058bed5de0e60
