[INFO] cloning repository https://github.com/cmdcolin/vcfverifier
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/cmdcolin/vcfverifier" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcmdcolin%2Fvcfverifier", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcmdcolin%2Fvcfverifier'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 39da8b88ae4bb6a0456723549657980d9fdb615b
[INFO] checking cmdcolin/vcfverifier against master#73252d51d13c0e4f872c3c51defcf48174860ef6 for pr-119989
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcmdcolin%2Fvcfverifier" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/cmdcolin/vcfverifier on toolchain 73252d51d13c0e4f872c3c51defcf48174860ef6
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+73252d51d13c0e4f872c3c51defcf48174860ef6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/cmdcolin/vcfverifier
[INFO] finished tweaking git repo https://github.com/cmdcolin/vcfverifier
[INFO] tweaked toml for git repo https://github.com/cmdcolin/vcfverifier written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/cmdcolin/vcfverifier already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+73252d51d13c0e4f872c3c51defcf48174860ef6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[ERROR] this task or one of its parent failed!
[ERROR] no output for 300 seconds
[ERROR] note: run with `RUST_BACKTRACE=1` to display a backtrace.
[INFO] checking cmdcolin/vcfverifier against try#5d004039df46bb665b8ed6385386e3b1b007a6a8 for pr-119989
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcmdcolin%2Fvcfverifier" "/workspace/builds/worker-4-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/cmdcolin/vcfverifier on toolchain 5d004039df46bb665b8ed6385386e3b1b007a6a8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+5d004039df46bb665b8ed6385386e3b1b007a6a8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/cmdcolin/vcfverifier
[INFO] finished tweaking git repo https://github.com/cmdcolin/vcfverifier
[INFO] tweaked toml for git repo https://github.com/cmdcolin/vcfverifier written to /workspace/builds/worker-4-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/cmdcolin/vcfverifier already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+5d004039df46bb665b8ed6385386e3b1b007a6a8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[INFO] checking cmdcolin/vcfverifier against try#5d004039df46bb665b8ed6385386e3b1b007a6a8 for pr-119989
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcmdcolin%2Fvcfverifier" "/workspace/builds/worker-4-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/cmdcolin/vcfverifier on toolchain 5d004039df46bb665b8ed6385386e3b1b007a6a8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+5d004039df46bb665b8ed6385386e3b1b007a6a8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/cmdcolin/vcfverifier
[INFO] finished tweaking git repo https://github.com/cmdcolin/vcfverifier
[INFO] tweaked toml for git repo https://github.com/cmdcolin/vcfverifier written to /workspace/builds/worker-4-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/cmdcolin/vcfverifier already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+5d004039df46bb665b8ed6385386e3b1b007a6a8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded bio-types v0.13.0
[INFO] [stderr]   Downloaded rust-htslib v0.39.5
[INFO] [stderr]   Downloaded lzma-sys v0.1.19
[INFO] [stderr]   Downloaded curl-sys v0.4.56+curl-7.83.1
[INFO] [stderr]   Downloaded faimm v0.3.0
[INFO] [stderr]   Downloaded hts-sys v2.0.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+5d004039df46bb665b8ed6385386e3b1b007a6a8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] b62e3c24fe3069a54fb7cd1f4ac5b4d8d6e95e257d804e4aa7ac098b164599ff
[INFO] running `Command { std: "docker" "start" "-a" "b62e3c24fe3069a54fb7cd1f4ac5b4d8d6e95e257d804e4aa7ac098b164599ff", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b62e3c24fe3069a54fb7cd1f4ac5b4d8d6e95e257d804e4aa7ac098b164599ff", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b62e3c24fe3069a54fb7cd1f4ac5b4d8d6e95e257d804e4aa7ac098b164599ff", kill_on_drop: false }`
[INFO] [stdout] b62e3c24fe3069a54fb7cd1f4ac5b4d8d6e95e257d804e4aa7ac098b164599ff
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+5d004039df46bb665b8ed6385386e3b1b007a6a8" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] a3452ac9945f5c6c546556ad3809986699050987cdc1525c22698aeec7aeb5b9
[INFO] running `Command { std: "docker" "start" "-a" "a3452ac9945f5c6c546556ad3809986699050987cdc1525c22698aeec7aeb5b9", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.126
[INFO] [stderr]    Compiling pkg-config v0.3.25
[INFO] [stderr]    Compiling proc-macro2 v1.0.42
[INFO] [stderr]    Compiling unicode-ident v1.0.2
[INFO] [stderr]    Compiling autocfg v1.1.0
[INFO] [stderr]    Compiling quote v1.0.20
[INFO] [stderr]    Compiling syn v1.0.98
[INFO] [stderr]    Compiling version_check v0.9.4
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]     Checking tinyvec_macros v0.1.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling heck v0.4.0
[INFO] [stderr]    Compiling rustversion v1.0.8
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking tinyvec v1.6.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling indexmap v1.9.1
[INFO] [stderr]     Checking matches v0.1.9
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling jobserver v0.1.24
[INFO] [stderr]     Checking aho-corasick v0.7.18
[INFO] [stderr]    Compiling cc v1.0.73
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking percent-encoding v2.1.0
[INFO] [stderr]     Checking unicode-normalization v0.1.21
[INFO] [stderr]     Checking unicode-bidi v0.3.8
[INFO] [stderr]     Checking regex-syntax v0.6.27
[INFO] [stderr]    Compiling crc32fast v1.3.2
[INFO] [stderr]    Compiling cmake v0.1.48
[INFO] [stderr]    Compiling openssl-src v111.22.0+1.1.1q
[INFO] [stderr]     Checking hashbrown v0.12.3
[INFO] [stderr]     Checking idna v0.2.3
[INFO] [stderr]     Checking form_urlencoded v1.0.1
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]     Checking cfg-if v1.0.0
[INFO] [stderr]     Checking os_str_bytes v6.2.0
[INFO] [stderr]     Checking adler v1.0.2
[INFO] [stderr]     Checking miniz_oxide v0.5.3
[INFO] [stderr]    Compiling openssl-sys v0.9.75
[INFO] [stderr]    Compiling libz-sys v1.1.8
[INFO] [stderr]    Compiling curl-sys v0.4.56+curl-7.83.1
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.19
[INFO] [stderr]    Compiling hts-sys v2.0.2
[INFO] [stderr]     Checking url v2.2.2
[INFO] [stderr]     Checking clap_lex v0.2.4
[INFO] [stderr]     Checking memmap2 v0.3.1
[INFO] [stderr]     Checking regex v1.6.0
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking termcolor v1.1.3
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking once_cell v1.13.0
[INFO] [stderr]     Checking bitflags v1.3.2
[INFO] [stderr]     Checking byteorder v1.4.3
[INFO] [stderr]     Checking textwrap v0.15.0
[INFO] [stderr]     Checking strsim v0.10.0
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking faimm v0.3.0
[INFO] [stderr]     Checking flate2 v1.0.24
[INFO] [stderr]    Compiling thiserror-impl v1.0.31
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.24.2
[INFO] [stderr]    Compiling clap_derive v3.2.15
[INFO] [stderr]     Checking thiserror v1.0.31
[INFO] [stderr]     Checking bio-types v0.13.0
[INFO] [stderr]     Checking clap v3.2.15
[INFO] [stderr]     Checking rust-htslib v0.39.5
[INFO] [stderr]     Checking vcfverifier v0.1.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: using `.clone()` on a double reference, which returns `&str` instead of cloning the inner type
[INFO] [stdout]   --> src/main.rs:65:18
[INFO] [stdout]    |
[INFO] [stdout] 65 |           .unwrap()
[INFO] [stdout]    |  __________________^
[INFO] [stdout] 66 | |         .clone();
[INFO] [stdout]    | |________________^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(suspicious_double_ref_op)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: using `.clone()` on a double reference, which returns `&str` instead of cloning the inner type
[INFO] [stdout]   --> src/main.rs:65:18
[INFO] [stdout]    |
[INFO] [stdout] 65 |           .unwrap()
[INFO] [stdout]    |  __________________^
[INFO] [stdout] 66 | |         .clone();
[INFO] [stdout]    | |________________^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(suspicious_double_ref_op)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 31.15s
[INFO] running `Command { std: "docker" "inspect" "a3452ac9945f5c6c546556ad3809986699050987cdc1525c22698aeec7aeb5b9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a3452ac9945f5c6c546556ad3809986699050987cdc1525c22698aeec7aeb5b9", kill_on_drop: false }`
[INFO] [stdout] a3452ac9945f5c6c546556ad3809986699050987cdc1525c22698aeec7aeb5b9