[INFO] fetching crate nu_plugin_bio 0.85.0...
[INFO] checking nu_plugin_bio-0.85.0 against master#e9271846294c4ee5bd7706df68180320c0b5ff20 for pr-119825
[INFO] extracting crate nu_plugin_bio 0.85.0 into /workspace/builds/worker-3-tc1/source
[INFO] validating manifest of crates.io crate nu_plugin_bio 0.85.0 on toolchain e9271846294c4ee5bd7706df68180320c0b5ff20
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+e9271846294c4ee5bd7706df68180320c0b5ff20" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate nu_plugin_bio 0.85.0
[INFO] finished tweaking crates.io crate nu_plugin_bio 0.85.0
[INFO] tweaked toml for crates.io crate nu_plugin_bio 0.85.0 written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] crate crates.io crate nu_plugin_bio 0.85.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+e9271846294c4ee5bd7706df68180320c0b5ff20" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded lru v0.11.1
[INFO] [stderr]   Downloaded unicode-linebreak v0.1.4
[INFO] [stderr]   Downloaded pwd v1.4.0
[INFO] [stderr]   Downloaded noodles-csi v0.25.0
[INFO] [stderr]   Downloaded noodles-core v0.12.0
[INFO] [stderr]   Downloaded nu-path v0.85.0
[INFO] [stderr]   Downloaded noodles-bcf v0.38.0
[INFO] [stderr]   Downloaded noodles-tabix v0.30.0
[INFO] [stderr]   Downloaded libproc v0.14.2
[INFO] [stderr]   Downloaded vte v0.11.1
[INFO] [stderr]   Downloaded rayon v1.6.0
[INFO] [stderr]   Downloaded rustix v0.36.16
[INFO] [stderr]   Downloaded gfa v0.10.1
[INFO] [stderr]   Downloaded rustix v0.38.19
[INFO] [stderr]   Downloaded noodles-cram v0.44.0
[INFO] [stderr]   Downloaded typetag v0.2.5
[INFO] [stderr]   Downloaded noodles-sam v0.44.0
[INFO] [stderr]   Downloaded omnipath v0.1.1
[INFO] [stderr]   Downloaded num-format v0.4.3
[INFO] [stderr]   Downloaded typetag-impl v0.2.5
[INFO] [stderr]   Downloaded noodles-vcf v0.41.0
[INFO] [stderr]   Downloaded nu-protocol v0.85.0
[INFO] [stderr]   Downloaded noodles-bed v0.10.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.25.0
[INFO] [stderr]   Downloaded sys-locale v0.3.1
[INFO] [stderr]   Downloaded byte-unit v4.0.17
[INFO] [stderr]   Downloaded ghost v0.1.6
[INFO] [stderr]   Downloaded nu-plugin v0.85.0
[INFO] [stderr]   Downloaded lscolors v0.15.0
[INFO] [stderr]   Downloaded inventory v0.3.3
[INFO] [stderr]   Downloaded nu-glob v0.85.0
[INFO] [stderr]   Downloaded strip-ansi-escapes v0.2.0
[INFO] [stderr]   Downloaded nu-utils v0.85.0
[INFO] [stderr]   Downloaded nu-system v0.85.0
[INFO] [stderr]   Downloaded noodles-gff v0.21.0
[INFO] [stderr]   Downloaded rmp-serde v1.1.1
[INFO] [stderr]   Downloaded noodles-fasta v0.30.0
[INFO] [stderr]   Downloaded noodles-bam v0.47.0
[INFO] [stderr]   Downloaded chrono-humanize v0.2.2
[INFO] [stderr]   Downloaded nu-engine v0.85.0
[INFO] [stderr]   Downloaded noodles-fastq v0.9.0
[INFO] [stderr]   Downloaded noodles v0.53.0
[INFO] [stderr]   Downloaded rmp v0.8.11
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+e9271846294c4ee5bd7706df68180320c0b5ff20" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] ffe1bb029b3f3d2578c8d5a4d9d0f97824f7fa117f61c31343b249d0d7913a35
[INFO] running `Command { std: "docker" "start" "-a" "ffe1bb029b3f3d2578c8d5a4d9d0f97824f7fa117f61c31343b249d0d7913a35", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ffe1bb029b3f3d2578c8d5a4d9d0f97824f7fa117f61c31343b249d0d7913a35", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ffe1bb029b3f3d2578c8d5a4d9d0f97824f7fa117f61c31343b249d0d7913a35", kill_on_drop: false }`
[INFO] [stdout] ffe1bb029b3f3d2578c8d5a4d9d0f97824f7fa117f61c31343b249d0d7913a35
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+e9271846294c4ee5bd7706df68180320c0b5ff20" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 2bf2013e00ee7866697623e790265765435be86928ea4a43fb0703fc98d17d8b
[INFO] running `Command { std: "docker" "start" "-a" "2bf2013e00ee7866697623e790265765435be86928ea4a43fb0703fc98d17d8b", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.69
[INFO] [stderr]    Compiling unicode-ident v1.0.5
[INFO] [stderr]    Compiling libc v0.2.149
[INFO] [stderr]    Compiling syn v1.0.104
[INFO] [stderr]    Compiling crossbeam-utils v0.8.14
[INFO] [stderr]     Checking once_cell v1.18.0
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]     Checking byteorder v1.4.3
[INFO] [stderr]     Checking miniz_oxide v0.6.2
[INFO] [stderr]    Compiling ahash v0.8.3
[INFO] [stderr]    Compiling serde_derive v1.0.148
[INFO] [stderr]     Checking flate2 v1.0.25
[INFO] [stderr]    Compiling serde v1.0.148
[INFO] [stderr]     Checking allocator-api2 v0.2.16
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking crossbeam-channel v0.5.6
[INFO] [stderr]    Compiling quote v1.0.33
[INFO] [stderr]     Checking hashbrown v0.14.1
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling ahash v0.7.6
[INFO] [stderr]     Checking noodles-core v0.12.0
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]     Checking noodles-bgzf v0.25.0
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.13
[INFO] [stderr]    Compiling rustix v0.38.19
[INFO] [stderr]    Compiling cc v1.0.77
[INFO] [stderr]     Checking indexmap v2.0.2
[INFO] [stderr]    Compiling aho-corasick v0.7.20
[INFO] [stderr]     Checking lexical-util v0.8.5
[INFO] [stderr]    Compiling getrandom v0.2.8
[INFO] [stderr]    Compiling syn v2.0.38
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]    Compiling regex-syntax v0.6.28
[INFO] [stderr]     Checking linux-raw-sys v0.4.10
[INFO] [stderr]    Compiling typenum v1.15.0
[INFO] [stderr]    Compiling hashbrown v0.12.3
[INFO] [stderr]     Checking noodles-csi v0.25.0
[INFO] [stderr]    Compiling generic-array v0.14.6
[INFO] [stderr]    Compiling io-lifetimes v1.0.11
[INFO] [stderr]    Compiling thiserror v1.0.49
[INFO] [stderr]    Compiling rayon-core v1.10.1
[INFO] [stderr]     Checking is-terminal v0.4.9
[INFO] [stderr]     Checking crossbeam-deque v0.8.2
[INFO] [stderr]     Checking num_cpus v1.14.0
[INFO] [stderr]     Checking time v0.1.45
[INFO] [stderr]     Checking iana-time-zone v0.1.53
[INFO] [stderr]    Compiling log v0.4.17
[INFO] [stderr]    Compiling rustix v0.36.16
[INFO] [stderr]     Checking pure-rust-locales v0.5.6
[INFO] [stderr]     Checking ryu v1.0.11
[INFO] [stderr]    Compiling regex v1.7.0
[INFO] [stderr]     Checking lexical-parse-integer v0.8.6
[INFO] [stderr]     Checking lexical-write-integer v0.8.5
[INFO] [stderr]    Compiling vte_generate_state_changes v0.1.1
[INFO] [stderr]    Compiling procfs v0.15.1
[INFO] [stderr]    Compiling thiserror-impl v1.0.49
[INFO] [stderr]    Compiling erased-serde v0.3.23
[INFO] [stderr]     Checking either v1.8.0
[INFO] [stderr]     Checking utf8parse v0.2.0
[INFO] [stderr]     Checking linux-raw-sys v0.1.4
[INFO] [stderr]     Checking itoa v1.0.4
[INFO] [stderr]     Checking vte v0.11.1
[INFO] [stderr]     Checking rayon v1.6.0
[INFO] [stderr]    Compiling ghost v0.1.6
[INFO] [stderr]    Compiling ctor v0.1.26
[INFO] [stderr]     Checking lexical-write-float v0.8.5
[INFO] [stderr]     Checking lexical-parse-float v0.8.5
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling unicode-linebreak v0.1.4
[INFO] [stderr]     Checking dirs-sys-next v0.1.2
[INFO] [stderr]     Checking is_ci v1.1.1
[INFO] [stderr]     Checking arrayvec v0.7.2
[INFO] [stderr]     Checking unicode-width v0.1.10
[INFO] [stderr]     Checking smawk v0.3.1
[INFO] [stderr]    Compiling serde_json v1.0.89
[INFO] [stderr]     Checking nu-ansi-term v0.49.0
[INFO] [stderr]     Checking sysinfo v0.29.10
[INFO] [stderr]     Checking supports-color v2.1.0
[INFO] [stderr]     Checking num-format v0.4.3
[INFO] [stderr]     Checking dirs-next v2.0.0
[INFO] [stderr]     Checking lscolors v0.15.0
[INFO] [stderr]     Checking lexical-core v0.8.5
[INFO] [stderr]     Checking inventory v0.3.3
[INFO] [stderr]     Checking pwd v1.4.0
[INFO] [stderr]     Checking strip-ansi-escapes v0.2.0
[INFO] [stderr]    Compiling typetag-impl v0.2.5
[INFO] [stderr]    Compiling miette-derive v5.10.0
[INFO] [stderr]     Checking crypto-common v0.1.6
[INFO] [stderr]     Checking block-buffer v0.10.3
[INFO] [stderr]     Checking supports-unicode v2.0.0
[INFO] [stderr]     Checking supports-hyperlinks v2.1.0
[INFO] [stderr]     Checking terminal_size v0.1.17
[INFO] [stderr]     Checking nix v0.27.1
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking utf8-width v0.1.6
[INFO] [stderr]     Checking sys-locale v0.3.1
[INFO] [stderr]    Compiling lexical-core v0.7.6
[INFO] [stderr]     Checking percent-encoding v2.2.0
[INFO] [stderr]     Checking owo-colors v3.5.0
[INFO] [stderr]     Checking nu-utils v0.85.0
[INFO] [stderr]     Checking fancy-regex v0.11.0
[INFO] [stderr]     Checking digest v0.10.6
[INFO] [stderr]     Checking nu-path v0.85.0
[INFO] [stderr]     Checking noodles-sam v0.44.0
[INFO] [stderr]     Checking noodles-tabix v0.30.0
[INFO] [stderr]     Checking lru v0.11.1
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]     Checking textwrap v0.15.2
[INFO] [stderr]    Compiling paste v1.0.9
[INFO] [stderr]    Compiling anyhow v1.0.66
[INFO] [stderr]     Checking arrayvec v0.5.2
[INFO] [stderr]     Checking noodles-vcf v0.41.0
[INFO] [stderr]     Checking miette v5.10.0
[INFO] [stderr]     Checking rmp v0.8.11
[INFO] [stderr]     Checking xz2 v0.1.7
[INFO] [stderr]     Checking md-5 v0.10.5
[INFO] [stderr]     Checking bzip2 v0.4.4
[INFO] [stderr]    Compiling bytemuck_derive v1.3.0
[INFO] [stderr]     Checking noodles-fasta v0.30.0
[INFO] [stderr]     Checking nu-glob v0.85.0
[INFO] [stderr]     Checking noodles-gff v0.21.0
[INFO] [stderr]     Checking memmap v0.7.0
[INFO] [stderr]     Checking noodles-bed v0.10.0
[INFO] [stderr]     Checking noodles-fastq v0.9.0
[INFO] [stderr]     Checking bstr v0.2.17
[INFO] [stderr]     Checking regex-automata v0.1.10
[INFO] [stderr]     Checking noodles-bam v0.47.0
[INFO] [stderr]     Checking noodles-bcf v0.38.0
[INFO] [stderr]     Checking bstr v1.0.1
[INFO] [stderr]     Checking noodles-cram v0.44.0
[INFO] [stderr]     Checking bytemuck v1.12.3
[INFO] [stderr]     Checking gfa v0.10.1
[INFO] [stderr]     Checking noodles v0.53.0
[INFO] [stderr]     Checking chrono v0.4.23
[INFO] [stderr]     Checking byte-unit v4.0.17
[INFO] [stderr]     Checking rmp-serde v1.1.1
[INFO] [stderr]     Checking bincode v1.3.3
[INFO] [stderr]     Checking typetag v0.2.5
[INFO] [stderr]     Checking chrono-humanize v0.2.2
[INFO] [stderr]     Checking nu-system v0.85.0
[INFO] [stderr]     Checking nu-protocol v0.85.0
[INFO] [stderr]     Checking nu-engine v0.85.0
[INFO] [stderr]     Checking nu-plugin v0.85.0
[INFO] [stderr]     Checking nu_plugin_bio v0.85.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 28.82s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nom v5.1.2
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 3`
[INFO] running `Command { std: "docker" "inspect" "2bf2013e00ee7866697623e790265765435be86928ea4a43fb0703fc98d17d8b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2bf2013e00ee7866697623e790265765435be86928ea4a43fb0703fc98d17d8b", kill_on_drop: false }`
[INFO] [stdout] 2bf2013e00ee7866697623e790265765435be86928ea4a43fb0703fc98d17d8b