[INFO] cloning repository https://github.com/FofanovLab/mtsv_tools
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/FofanovLab/mtsv_tools" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FFofanovLab%2Fmtsv_tools", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FFofanovLab%2Fmtsv_tools'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 67383ffd961f94e2edfe222d19b33db58b7b8b51
[INFO] checking FofanovLab/mtsv_tools against master#c3def263a44e07e09ae6d57abfc8650227fb4972 for pr-118920
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FFofanovLab%2Fmtsv_tools" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/FofanovLab/mtsv_tools on toolchain c3def263a44e07e09ae6d57abfc8650227fb4972
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c3def263a44e07e09ae6d57abfc8650227fb4972" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/FofanovLab/mtsv_tools
[INFO] finished tweaking git repo https://github.com/FofanovLab/mtsv_tools
[INFO] tweaked toml for git repo https://github.com/FofanovLab/mtsv_tools written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/FofanovLab/mtsv_tools already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c3def263a44e07e09ae6d57abfc8650227fb4972" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[ERROR] this task or one of its parent failed!
[ERROR] no output for 300 seconds
[ERROR] note: run with `RUST_BACKTRACE=1` to display a backtrace.
[INFO] checking FofanovLab/mtsv_tools against try#3931cbb869e499bf6db1e4d580cc247efbf183df for pr-118920
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FFofanovLab%2Fmtsv_tools" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/FofanovLab/mtsv_tools on toolchain 3931cbb869e499bf6db1e4d580cc247efbf183df
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3931cbb869e499bf6db1e4d580cc247efbf183df" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/FofanovLab/mtsv_tools
[INFO] finished tweaking git repo https://github.com/FofanovLab/mtsv_tools
[INFO] tweaked toml for git repo https://github.com/FofanovLab/mtsv_tools written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/FofanovLab/mtsv_tools already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3931cbb869e499bf6db1e4d580cc247efbf183df" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[INFO] checking FofanovLab/mtsv_tools against try#3931cbb869e499bf6db1e4d580cc247efbf183df for pr-118920
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FFofanovLab%2Fmtsv_tools" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/FofanovLab/mtsv_tools on toolchain 3931cbb869e499bf6db1e4d580cc247efbf183df
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3931cbb869e499bf6db1e4d580cc247efbf183df" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/FofanovLab/mtsv_tools
[INFO] finished tweaking git repo https://github.com/FofanovLab/mtsv_tools
[INFO] tweaked toml for git repo https://github.com/FofanovLab/mtsv_tools written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/FofanovLab/mtsv_tools already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3931cbb869e499bf6db1e4d580cc247efbf183df" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded uuid v0.1.18
[INFO] [stderr]   Downloaded syncbox v0.2.4
[INFO] [stderr]   Downloaded crossbeam v0.3.2
[INFO] [stderr]   Downloaded stopwatch v0.0.7
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded enum-map-derive v0.6.0
[INFO] [stderr]   Downloaded xattr v0.1.11
[INFO] [stderr]   Downloaded cc v1.0.4
[INFO] [stderr]   Downloaded miniz-sys v0.1.10
[INFO] [stderr]   Downloaded tar v0.4.14
[INFO] [stderr]   Downloaded bio-types v0.12.1
[INFO] [stderr]   Downloaded clap v2.29.4
[INFO] [stderr]   Downloaded filetime v0.1.15
[INFO] [stderr]   Downloaded num v0.1.41
[INFO] [stderr]   Downloaded quickcheck v0.3.2
[INFO] [stderr]   Downloaded enum-map v1.1.1
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded num-complex v0.1.42
[INFO] [stderr]   Downloaded num-rational v0.1.41
[INFO] [stderr]   Downloaded mktemp v0.2.1
[INFO] [stderr]   Downloaded num-bigint v0.1.42
[INFO] [stderr]   Downloaded itertools v0.4.19
[INFO] [stderr]   Downloaded bio v0.39.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+3931cbb869e499bf6db1e4d580cc247efbf183df" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 18f25c35b15c72d4366f8975eb5cfb50e7ca5ba2fa411db70100b692de4e1068
[INFO] running `Command { std: "docker" "start" "-a" "18f25c35b15c72d4366f8975eb5cfb50e7ca5ba2fa411db70100b692de4e1068", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "18f25c35b15c72d4366f8975eb5cfb50e7ca5ba2fa411db70100b692de4e1068", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "18f25c35b15c72d4366f8975eb5cfb50e7ca5ba2fa411db70100b692de4e1068", kill_on_drop: false }`
[INFO] [stdout] 18f25c35b15c72d4366f8975eb5cfb50e7ca5ba2fa411db70100b692de4e1068
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+3931cbb869e499bf6db1e4d580cc247efbf183df" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 82fd705646ccb64a873831580de9a5f2ffe567d87db2981f8b4f0ffdb6d03c30
[INFO] running `Command { std: "docker" "start" "-a" "82fd705646ccb64a873831580de9a5f2ffe567d87db2981f8b4f0ffdb6d03c30", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.115
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling proc-macro2 v1.0.36
[INFO] [stderr]    Compiling unicode-xid v0.2.2
[INFO] [stderr]    Compiling syn v1.0.86
[INFO] [stderr]    Compiling libm v0.2.1
[INFO] [stderr]    Compiling serde_derive v1.0.136
[INFO] [stderr]    Compiling memchr v2.4.1
[INFO] [stderr]    Compiling serde v1.0.136
[INFO] [stderr]     Checking cfg-if v0.1.2
[INFO] [stderr]    Compiling version_check v0.9.4
[INFO] [stderr]    Compiling winapi-build v0.1.1
[INFO] [stderr]     Checking cfg-if v1.0.0
[INFO] [stderr]     Checking rustc-serialize v0.3.24
[INFO] [stderr]    Compiling cc v1.0.4
[INFO] [stderr]     Checking winapi v0.2.8
[INFO] [stderr]     Checking ppv-lite86 v0.2.16
[INFO] [stderr]     Checking log v0.4.1
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling kernel32-sys v0.2.2
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling typenum v1.15.0
[INFO] [stderr]    Compiling rustversion v1.0.6
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking log v0.3.9
[INFO] [stderr]     Checking matrixmultiply v0.3.2
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling num-rational v0.4.0
[INFO] [stderr]    Compiling indexmap v1.8.0
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling paste v1.0.6
[INFO] [stderr]    Compiling unicode-segmentation v1.8.0
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking utf8-ranges v0.1.3
[INFO] [stderr]     Checking aho-corasick v0.7.18
[INFO] [stderr]    Compiling anyhow v1.0.53
[INFO] [stderr]    Compiling quote v1.0.15
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling miniz-sys v0.1.10
[INFO] [stderr]     Checking regex-syntax v0.3.9
[INFO] [stderr]     Checking regex-automata v0.1.10
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]     Checking hashbrown v0.11.2
[INFO] [stderr]     Checking regex-syntax v0.6.25
[INFO] [stderr]    Compiling ssw v0.1.0 (/opt/rustwide/workdir/ssw)
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking either v1.6.1
[INFO] [stderr]     Checking itoa v0.4.8
[INFO] [stderr]     Checking rand v0.4.2
[INFO] [stderr]     Checking getrandom v0.2.4
[INFO] [stderr]     Checking memchr v0.1.11
[INFO] [stderr]     Checking thread-id v2.0.0
[INFO] [stderr]     Checking aho-corasick v0.5.3
[INFO] [stderr]     Checking rand_core v0.6.3
[INFO] [stderr]     Checking thread_local v0.2.7
[INFO] [stderr]     Checking time v0.1.39
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking fixedbitset v0.4.1
[INFO] [stderr]     Checking unicode-width v0.1.4
[INFO] [stderr]     Checking byteorder v1.4.3
[INFO] [stderr]     Checking ryu v1.0.9
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking bit-set v0.5.2
[INFO] [stderr]     Checking textwrap v0.9.0
[INFO] [stderr]     Checking syncbox v0.2.4
[INFO] [stderr]     Checking itertools v0.10.3
[INFO] [stderr]     Checking filetime v0.1.15
[INFO] [stderr]     Checking xattr v0.1.11
[INFO] [stderr]     Checking regex v0.1.80
[INFO] [stderr]     Checking bitflags v1.0.1
[INFO] [stderr]     Checking strsim v0.7.0
[INFO] [stderr]     Checking rand v0.8.4
[INFO] [stderr]     Checking crossbeam v0.3.2
[INFO] [stderr]     Checking bytecount v0.6.2
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking strum v0.23.0
[INFO] [stderr]     Checking tar v0.4.14
[INFO] [stderr]     Checking clap v2.29.4
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking flate2 v0.2.20
[INFO] [stderr]     Checking itertools v0.4.19
[INFO] [stderr]     Checking rand v0.3.22
[INFO] [stderr]     Checking uuid v0.1.18
[INFO] [stderr]     Checking num-complex v0.4.0
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking num-traits v0.1.43
[INFO] [stderr]     Checking num-complex v0.1.42
[INFO] [stderr]     Checking petgraph v0.6.0
[INFO] [stderr]     Checking ordered-float v1.1.1
[INFO] [stderr]     Checking num-bigint v0.1.42
[INFO] [stderr]     Checking num-iter v0.1.35
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking cue v0.1.0 (/opt/rustwide/workdir/vendor/cue)
[INFO] [stderr]     Checking mktemp v0.2.1
[INFO] [stderr]     Checking simba v0.5.1
[INFO] [stderr]     Checking ndarray v0.15.4
[INFO] [stderr]     Checking env_logger v0.3.5
[INFO] [stderr]     Checking quickcheck v0.3.2
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking num-rational v0.1.41
[INFO] [stderr]     Checking regex v1.5.4
[INFO] [stderr]     Checking num v0.1.41
[INFO] [stderr]     Checking stopwatch v0.0.7
[INFO] [stderr]     Checking chrono v0.2.25
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.30
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.23.1
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling getset v0.1.2
[INFO] [stderr]     Checking enum-map v1.1.1
[INFO] [stderr]     Checking thiserror v1.0.30
[INFO] [stderr]     Checking bio-types v0.12.1
[INFO] [stderr]     Checking nalgebra v0.27.1
[INFO] [stderr]     Checking bstr v0.2.17
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking multimap v0.8.3
[INFO] [stderr]     Checking bincode v1.3.3
[INFO] [stderr]     Checking csv v1.1.6
[INFO] [stderr]     Checking statrs v0.15.0
[INFO] [stderr]     Checking bio v0.39.1
[INFO] [stderr]     Checking mtsv v2.0.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: duplicated attribute
[INFO] [stdout]    --> src/prep.rs:331:5
[INFO] [stdout]     |
[INFO] [stdout] 331 |     #[test]
[INFO] [stdout]     |     ^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(duplicate_macro_attributes)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 28.67s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1, rustc-serialize v0.3.24
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "82fd705646ccb64a873831580de9a5f2ffe567d87db2981f8b4f0ffdb6d03c30", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "82fd705646ccb64a873831580de9a5f2ffe567d87db2981f8b4f0ffdb6d03c30", kill_on_drop: false }`
[INFO] [stdout] 82fd705646ccb64a873831580de9a5f2ffe567d87db2981f8b4f0ffdb6d03c30