[INFO] fetching crate noodles-vcf 0.47.0... [INFO] testing noodles-vcf-0.47.0 against master#ff2c56344c764af598ad33027e9c7a48881808ef for pr-118825 [INFO] extracting crate noodles-vcf 0.47.0 into /workspace/builds/worker-1-tc1/source [INFO] validating manifest of crates.io crate noodles-vcf 0.47.0 on toolchain ff2c56344c764af598ad33027e9c7a48881808ef [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ff2c56344c764af598ad33027e9c7a48881808ef" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate noodles-vcf 0.47.0 [INFO] removed 0 missing examples [INFO] finished tweaking crates.io crate noodles-vcf 0.47.0 [INFO] tweaked toml for crates.io crate noodles-vcf 0.47.0 written to /workspace/builds/worker-1-tc1/source/Cargo.toml [INFO] crate crates.io crate noodles-vcf 0.47.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ff2c56344c764af598ad33027e9c7a48881808ef" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded noodles-csi v0.28.0 [INFO] [stderr] Downloaded noodles-tabix v0.34.0 [INFO] [stderr] Downloaded noodles-bgzf v0.25.0 [INFO] [stderr] Downloaded tracing-core v0.1.31 [INFO] [stderr] Downloaded noodles-core v0.12.0 [INFO] [stderr] Downloaded proc-macro2 v1.0.67 [INFO] [stderr] Downloaded tokio-util v0.7.9 [INFO] [stderr] Downloaded syn v2.0.37 [INFO] [stderr] Downloaded libc v0.2.148 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+ff2c56344c764af598ad33027e9c7a48881808ef" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] ef2c865855d914f8fff41900a0edb07233085d9773cabf0cb3693f8d9d0310f1 [INFO] running `Command { std: "docker" "start" "-a" "ef2c865855d914f8fff41900a0edb07233085d9773cabf0cb3693f8d9d0310f1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ef2c865855d914f8fff41900a0edb07233085d9773cabf0cb3693f8d9d0310f1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ef2c865855d914f8fff41900a0edb07233085d9773cabf0cb3693f8d9d0310f1", kill_on_drop: false }` [INFO] [stdout] ef2c865855d914f8fff41900a0edb07233085d9773cabf0cb3693f8d9d0310f1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+ff2c56344c764af598ad33027e9c7a48881808ef" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 905017225e254b9e43fc4744d921af096243f7e27672470870ceb584ecc38f1c [INFO] running `Command { std: "docker" "start" "-a" "905017225e254b9e43fc4744d921af096243f7e27672470870ceb584ecc38f1c", kill_on_drop: false }` [INFO] [stderr] Compiling crc32fast v1.3.2 [INFO] [stderr] Compiling crossbeam-utils v0.8.16 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling byteorder v1.4.3 [INFO] [stderr] Compiling bytes v1.5.0 [INFO] [stderr] Compiling hashbrown v0.14.0 [INFO] [stderr] Compiling equivalent v1.0.1 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling noodles-core v0.12.0 [INFO] [stderr] Compiling percent-encoding v2.3.0 [INFO] [stderr] Compiling memchr v2.6.3 [INFO] [stderr] Compiling miniz_oxide v0.7.1 [INFO] [stderr] Compiling flate2 v1.0.27 [INFO] [stderr] Compiling indexmap v2.0.0 [INFO] [stderr] Compiling crossbeam-channel v0.5.8 [INFO] [stderr] Compiling noodles-bgzf v0.25.0 [INFO] [stderr] Compiling noodles-csi v0.28.0 [INFO] [stderr] Compiling noodles-tabix v0.34.0 [INFO] [stderr] Compiling noodles-vcf v0.47.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 3.34s [INFO] running `Command { std: "docker" "inspect" "905017225e254b9e43fc4744d921af096243f7e27672470870ceb584ecc38f1c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "905017225e254b9e43fc4744d921af096243f7e27672470870ceb584ecc38f1c", kill_on_drop: false }` [INFO] [stdout] 905017225e254b9e43fc4744d921af096243f7e27672470870ceb584ecc38f1c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+ff2c56344c764af598ad33027e9c7a48881808ef" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a093ac364b74ef3a4ccdf25d6eafcef39f700ca5c032ab2e0e02c99416dde831 [INFO] running `Command { std: "docker" "start" "-a" "a093ac364b74ef3a4ccdf25d6eafcef39f700ca5c032ab2e0e02c99416dde831", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.67 [INFO] [stderr] Compiling libc v0.2.148 [INFO] [stderr] Compiling quote v1.0.33 [INFO] [stderr] Compiling syn v2.0.37 [INFO] [stderr] Compiling num_cpus v1.16.0 [INFO] [stderr] Compiling tokio-macros v2.1.0 [INFO] [stderr] Compiling tokio v1.32.0 [INFO] [stderr] Compiling noodles-vcf v0.47.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 9.74s [INFO] running `Command { std: "docker" "inspect" "a093ac364b74ef3a4ccdf25d6eafcef39f700ca5c032ab2e0e02c99416dde831", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a093ac364b74ef3a4ccdf25d6eafcef39f700ca5c032ab2e0e02c99416dde831", kill_on_drop: false }` [INFO] [stdout] a093ac364b74ef3a4ccdf25d6eafcef39f700ca5c032ab2e0e02c99416dde831 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+ff2c56344c764af598ad33027e9c7a48881808ef" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 8942c07ca09d9bb6d06fb3377fec8203a9147bcc26bffafeb0ba9dfe18d9ee4c [INFO] running `Command { std: "docker" "start" "-a" "8942c07ca09d9bb6d06fb3377fec8203a9147bcc26bffafeb0ba9dfe18d9ee4c", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.03s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/noodles_vcf-ab6db8170b445a3f) [INFO] [stdout] [INFO] [stdout] running 185 tests [INFO] [stdout] test header::builder::tests::test_default ... ok [INFO] [stdout] test header::file_format::tests::test_fmt ... ok [INFO] [stdout] test header::builder::tests::test_build ... ok [INFO] [stdout] test header::fmt::tests::test_write_escaped_string ... ok [INFO] [stdout] test header::file_format::tests::test_default ... ok [INFO] [stdout] test header::fmt::tests::test_write_meta_record ... ok [INFO] [stdout] test header::file_format::tests::test_from_str ... ok [INFO] [stdout] test header::number::tests::test_default ... ok [INFO] [stdout] test header::number::tests::test_fmt ... ok [INFO] [stdout] test header::number::tests::test_from_str ... ok [INFO] [stdout] test header::parser::builder::tests::test_default ... ok [INFO] [stdout] test header::parser::record::key::tests::test_parse_key ... ok [INFO] [stdout] test header::parser::record::tests::test_consume_prefix ... ok [INFO] [stdout] test header::parser::record::value::map::alternative_allele::tests::test_parse_filter ... ok [INFO] [stdout] test header::parser::record::value::map::contig::tests::test_parse_contig ... ok [INFO] [stdout] test header::parser::record::value::map::field::tests::test_consume_separator ... ok [INFO] [stdout] test header::parser::record::value::map::field::key::tests::test_parse_key ... ok [INFO] [stdout] test header::parser::record::value::map::field::value::string::tests::test_parse_escaped_string ... ok [INFO] [stdout] test header::parser::record::value::map::field::value::tests::test_parse_value ... ok [INFO] [stdout] test header::parser::record::value::map::field::value::string::tests::test_parse_raw_string ... ok [INFO] [stdout] test header::parser::record::value::map::filter::tests::test_parse_filter ... ok [INFO] [stdout] test header::parser::record::value::map::format::tests::test_parse_format ... ok [INFO] [stdout] test header::parser::record::value::map::info::tests::test_parse_info ... ok [INFO] [stdout] test header::parser::record::value::map::other::tests::test_parse_meta ... ok [INFO] [stdout] test header::parser::record::value::map::tests::test_is_map ... ok [INFO] [stdout] test header::parser::record::value::string::tests::test_parse_string ... ok [INFO] [stdout] test header::parser::tests::test_from_str_with_data_after_header ... ok [INFO] [stdout] test header::parser::record::value::map::other::tests::test_parse_other ... ok [INFO] [stdout] test header::parser::tests::test_from_str_with_duplicate_sample_names ... ok [INFO] [stdout] test header::record::key::other::tests::test_from_str ... ok [INFO] [stdout] test header::parser::tests::test_from_str_with_duplicate_map_id ... ok [INFO] [stdout] test header::parser::tests::test_from_str_with_missing_headers ... ok [INFO] [stdout] test header::parser::tests::test_from_str_with_invalid_headers ... ok [INFO] [stdout] test header::parser::tests::test_from_str_without_file_format ... ok [INFO] [stdout] test header::record::key::tests::test_from ... ok [INFO] [stdout] test header::record::key::tests::test_fmt ... ok [INFO] [stdout] test header::record::value::map::alternative_allele::tests::test_fmt ... ok [INFO] [stdout] test header::record::value::map::contig::tag::tests::test_as_ref_str_for_standard ... ok [INFO] [stdout] test header::record::value::map::contig::tests::test_fmt ... ok [INFO] [stdout] test header::record::value::map::filter::tests::test_fmt ... ok [INFO] [stdout] test header::record::value::map::format::tests::test_fmt ... ok [INFO] [stdout] test header::record::value::map::format::ty::tests::test_default ... ok [INFO] [stdout] test header::parser::tests::test_from_str ... ok [INFO] [stdout] test header::parser::tests::test_from_str_with_multiple_fileformats ... ok [INFO] [stdout] test header::record::tests::test_from_str ... ok [INFO] [stdout] test header::record::value::map::format::ty::tests::test_fmt ... ok [INFO] [stdout] test header::parser::record::value::map::other::tests::test_parse_pedigree ... ok [INFO] [stdout] test header::record::value::map::format::ty::tests::test_from_str ... ok [INFO] [stdout] test header::record::value::map::info::ty::tests::test_fmt ... ok [INFO] [stdout] test header::record::value::map::info::tests::test_fmt ... ok [INFO] [stdout] test header::record::value::map::info::ty::tests::test_default ... ok [INFO] [stdout] test header::tests::test_default ... ok [INFO] [stdout] test header::record::value::map::info::ty::tests::test_from_str ... ok [INFO] [stdout] test header::tests::test_insert_with_duplicate_keys ... ok [INFO] [stdout] test indexed_reader::builder::tests::test_push_ext ... ok [INFO] [stdout] test lazy::record::filters::tests::test_iter ... ok [INFO] [stdout] test header::record::value::map::other::tests::test_fmt ... ok [INFO] [stdout] test lazy::record::genotypes::sample::tests::test_values ... ok [INFO] [stdout] test header::record::value::map::tag::other::tests::test_from_str ... ok [INFO] [stdout] test lazy::record::genotypes::tests::test_keys ... ok [INFO] [stdout] test lazy::record::ids::tests::test_is_empty ... ok [INFO] [stdout] test header::tests::test_fmt ... ok [INFO] [stdout] test lazy::record::genotypes::tests::test_is_empty ... ok [INFO] [stdout] test header::tests::test_fmt_with_genotypes ... ok [INFO] [stdout] test lazy::record::genotypes::tests::test_samples ... ok [INFO] [stdout] test lazy::record::ids::tests::test_iter ... ok [INFO] [stdout] test reader::header::tests::test_read_raw_header_with_missing_end_of_line ... ok [INFO] [stdout] test reader::header::tests::test_read_raw_header_with_multiple_buffer_fills ... ok [INFO] [stdout] test reader::header::tests::test_read_raw_header_with_no_header ... ok [INFO] [stdout] test lazy::record::info::tests::test_is_empty ... ok [INFO] [stdout] test lazy::record::info::tests::test_iter ... ok [INFO] [stdout] test reader::header::tests::test_read_raw_header_with_no_records ... ok [INFO] [stdout] test reader::header::tests::test_read_raw_header ... ok [INFO] [stdout] test reader::record::alternate_bases::tests::test_parse_alternate_bases ... ok [INFO] [stdout] test reader::record::chromosome::tests::test_is_valid_name ... ok [INFO] [stdout] test reader::record::genotypes::values::tests::test_parse_values ... ok [INFO] [stdout] test reader::record::filters::tests::test_parse_filters ... ok [INFO] [stdout] test reader::record::genotypes::keys::tests::test_parse_keys ... ok [INFO] [stdout] test reader::record::chromosome::tests::test_parse_chromosome ... ok [INFO] [stdout] test reader::record::genotypes::tests::test_parse_genotypes ... ok [INFO] [stdout] test reader::record::genotypes::values::value::tests::test_parse_value_with_float ... ok [INFO] [stdout] test reader::record::ids::id::tests::test_parse_id ... ok [INFO] [stdout] test reader::record::info::field::tests::test_parse_field ... ok [INFO] [stdout] test reader::record::genotypes::values::value::tests::test_parse_value_with_integer ... ok [INFO] [stdout] test reader::record::genotypes::values::value::tests::test_parse_value_with_character ... ok [INFO] [stdout] test reader::record::ids::tests::test_parse_ids ... ok [INFO] [stdout] test reader::record::info::field::value::tests::test_parse_value_with_integer ... ok [INFO] [stdout] test reader::record::genotypes::values::value::tests::test_parse_value_with_string ... ok [INFO] [stdout] test reader::record::info::field::value::tests::test_parse_value_with_string ... ok [INFO] [stdout] test reader::record::position::tests::test_parse_position ... ok [INFO] [stdout] test reader::record::info::tests::test_parse_info ... ok [INFO] [stdout] test reader::record::info::field::value::tests::test_parse_value_with_character ... ok [INFO] [stdout] test reader::record::info::field::value::tests::test_parse_value_with_flag ... ok [INFO] [stdout] test reader::record::quality_score::tests::test_parse_position ... ok [INFO] [stdout] test reader::record::reference_bases::tests::test_parse_reference_bases ... ok [INFO] [stdout] test reader::record::info::field::value::tests::test_parse_value_with_float ... ok [INFO] [stdout] test reader::tests::test_read_lazy_record ... ok [INFO] [stdout] test reader::tests::test_read_line ... ok [INFO] [stdout] test reader::record::reference_bases::base::tests::test_parse_base ... ok [INFO] [stdout] test record::alternate_bases::allele::symbol::structural_variant::tests::test_fmt ... ok [INFO] [stdout] test record::alternate_bases::allele::symbol::structural_variant::tests::test_from_type_for_symbol ... ok [INFO] [stdout] test reader::tests::test_read_record ... ok [INFO] [stdout] test record::alternate_bases::allele::symbol::structural_variant::tests::test_from_str ... ok [INFO] [stdout] test record::alternate_bases::allele::symbol::structural_variant::ty::tests::test_from_str ... ok [INFO] [stdout] test record::alternate_bases::allele::symbol::structural_variant::ty::tests::test_fmt ... ok [INFO] [stdout] test record::alternate_bases::allele::symbol::tests::test_fmt ... ok [INFO] [stdout] test record::alternate_bases::allele::symbol::tests::test_from_str ... ok [INFO] [stdout] test record::alternate_bases::allele::tests::test_fmt ... ok [INFO] [stdout] test record::alternate_bases::tests::test_fmt ... ok [INFO] [stdout] test record::builder::tests::test_build ... ok [INFO] [stdout] test record::alternate_bases::tests::test_from_str ... ok [INFO] [stdout] test record::chromosome::tests::test_fmt ... ok [INFO] [stdout] test record::builder::tests::test_default ... ok [INFO] [stdout] test record::alternate_bases::allele::tests::test_from_str ... ok [INFO] [stdout] test record::filters::tests::test_try_from_iter ... ok [INFO] [stdout] test record::chromosome::tests::test_from_str ... ok [INFO] [stdout] test record::genotypes::keys::key::tests::test_fmt ... ok [INFO] [stdout] test record::filters::tests::test_from_str ... ok [INFO] [stdout] test record::filters::tests::test_fmt ... ok [INFO] [stdout] test record::genotypes::keys::tests::test_from_str ... ok [INFO] [stdout] test record::genotypes::sample::tests::test_genotype ... ok [INFO] [stdout] test record::genotypes::sample::value::genotype::allele::tests::test_from_str ... ok [INFO] [stdout] test record::genotypes::sample::value::genotype::allele::phasing::tests::test_from_str ... ok [INFO] [stdout] test record::genotypes::keys::tests::test_try_from_vec_key_for_format ... ok [INFO] [stdout] test record::genotypes::keys::tests::test_fmt ... ok [INFO] [stdout] test record::genotypes::sample::value::genotype::allele::phasing::tests::test_fmt ... ok [INFO] [stdout] test record::genotypes::keys::key::tests::test_from_str ... ok [INFO] [stdout] test record::genotypes::sample::value::genotype::tests::test_from_str ... ok [INFO] [stdout] test record::genotypes::sample::value::genotype::tests::test_try_from_alleles_for_genotype ... ok [INFO] [stdout] test record::genotypes::sample::value::tests::test_fmt ... ok [INFO] [stdout] test record::genotypes::sample::value::tests::test_parse_with_float ... ok [INFO] [stdout] test record::genotypes::sample::value::tests::test_parse_with_string ... ok [INFO] [stdout] test record::genotypes::tests::test_fmt ... ok [INFO] [stdout] test record::genotypes::tests::test_from_str ... ok [INFO] [stdout] test record::genotypes::sample::value::tests::test_parse_with_integer ... ok [INFO] [stdout] test record::genotypes::sample::value::tests::test_parse_with_character ... ok [INFO] [stdout] test record::genotypes::tests::test_genotypes ... ok [INFO] [stdout] test record::ids::id::tests::test_from_str ... ok [INFO] [stdout] test record::info::field::key::tests::test_fmt ... ok [INFO] [stdout] test record::ids::tests::test_from_str ... ok [INFO] [stdout] test record::info::field::key::tests::test_from_str ... ok [INFO] [stdout] test record::info::field::value::tests::test_parse_with_character ... ok [INFO] [stdout] test record::info::field::tests::test_parse ... ok [INFO] [stdout] test record::info::field::value::tests::test_fmt ... ok [INFO] [stdout] test record::info::field::value::tests::test_parse_with_flag ... ok [INFO] [stdout] test record::info::field::value::tests::test_parse_with_string ... ok [INFO] [stdout] test record::info::tests::test_fmt ... ok [INFO] [stdout] test record::info::field::value::tests::test_parse_with_float ... ok [INFO] [stdout] test record::ids::tests::test_fmt ... ok [INFO] [stdout] test record::info::field::value::tests::test_parse_with_integer ... ok [INFO] [stdout] test record::info::tests::test_extend ... ok [INFO] [stdout] test record::parser::tests::test_parse_with_genotype_info ... ok [INFO] [stdout] test record::position::tests::test_fmt ... ok [INFO] [stdout] test record::position::tests::test_from_position_for_usize ... ok [INFO] [stdout] test record::position::tests::test_from_usize_for_position ... ok [INFO] [stdout] test record::info::tests::test_from_str ... ok [INFO] [stdout] test record::quality_score::tests::test_from_quality_score_for_f32 ... ok [INFO] [stdout] test record::position::tests::test_from_str ... ok [INFO] [stdout] test record::reference_bases::base::tests::test_from_base_for_char ... ok [INFO] [stdout] test record::reference_bases::base::tests::test_try_from_char_for_base ... ok [INFO] [stdout] test record::parser::tests::test_parse ... ok [INFO] [stdout] test record::position::tests::test_partial_ord_core_position_for_position ... ok [INFO] [stdout] test record::quality_score::tests::test_fmt ... ok [INFO] [stdout] test record::quality_score::tests::test_from_str ... ok [INFO] [stdout] test record::position::tests::test_partial_eq_core_position_for_position ... ok [INFO] [stdout] test record::reference_bases::tests::test_fmt ... ok [INFO] [stdout] test record::reference_bases::tests::test_from_str ... ok [INFO] [stdout] test record::reference_bases::tests::test_try_from_vec_bases_for_reference_bases ... ok [INFO] [stdout] test record::tests::test_default ... ok [INFO] [stdout] test record::tests::test_end ... ok [INFO] [stdout] test record::tests::test_fmt ... ok [INFO] [stdout] test record::quality_score::tests::test_try_from_float_for_quality_score ... ok [INFO] [stdout] test record::tests::test_fmt_with_format ... ok [INFO] [stdout] test record::value::tests::test_percent_decode ... ok [INFO] [stdout] test writer::record::chromosome::tests::test_write_chromosome ... ok [INFO] [stdout] test writer::record::filters::tests::test_write_filters ... ok [INFO] [stdout] test writer::record::genotypes::tests::test_write_value ... ok [INFO] [stdout] test writer::record::genotypes::tests::test_write_genotypes ... ok [INFO] [stdout] test writer::record::ids::tests::test_write_ids ... ok [INFO] [stdout] test writer::record::quality_score::tests::test_write_quality_score ... ok [INFO] [stdout] test writer::record::info::tests::test_write_info ... ok [INFO] [stdout] test writer::record::tests::test_write_record ... ok [INFO] [stdout] test writer::tests::test_write_header ... ok [INFO] [stdout] test writer::tests::test_write_record ... ok [INFO] [stdout] test writer::tests::test_write_record_with_format ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 185 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stderr] Doc-tests noodles-vcf [INFO] [stdout] [INFO] [stdout] running 137 tests [INFO] [stdout] test src/header.rs - header::Header::formats_mut (line 233) ... ok [INFO] [stdout] test src/header.rs - header::Header::file_format (line 78) ... ok [INFO] [stdout] test src/header.rs - header::Header::builder (line 64) ... ok [INFO] [stdout] test src/header.rs - header::Header::alternative_alleles (line 258) ... ok [INFO] [stdout] test src/header.rs - header::Header::contigs (line 315) ... ok [INFO] [stdout] test src/header.rs - header::Header::other_records (line 408) ... ok [INFO] [stdout] test src/header.rs - header::Header::filters (line 166) ... ok [INFO] [stdout] test src/header.rs - header::Header::filters_mut (line 187) ... ok [INFO] [stdout] test src/header.rs - header::Header::infos (line 115) ... ok [INFO] [stdout] test src/header.rs - header::Header::insert (line 485) ... ok [INFO] [stdout] test src/header.rs - header::Header::get (line 456) ... ok [INFO] [stdout] test src/header.rs - header::Header::file_format_mut (line 97) ... ok [INFO] [stdout] test src/header.rs - header::Header::infos_mut (line 141) ... ok [INFO] [stdout] test src/header.rs - header::Header::formats (line 207) ... ok [INFO] [stdout] test src/header.rs - header::Header::contigs_mut (line 338) ... ok [INFO] [stdout] test src/header.rs - header::Header::alternative_alleles_mut (line 287) ... ok [INFO] [stdout] test src/header.rs - header::Header::sample_names (line 360) ... ok [INFO] [stdout] test src/header.rs - header::Header::sample_names_mut (line 384) ... ok [INFO] [stdout] test src/header.rs - header::Header::other_records_mut (line 431) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::add_alternative_allele (line 134) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::build (line 286) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::add_contig (line 168) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::add_filter (line 78) ... ok [INFO] [stdout] test src/header/record/key.rs - header::record::key::Key::other (line 91) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::add_info (line 51) ... ok [INFO] [stdout] test src/header/file_format.rs - header::file_format::FileFormat::minor (line 49) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::add_format (line 103) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::set_file_format (line 33) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::set_sample_names (line 196) ... ok [INFO] [stdout] test src/header/record/value/map.rs - header::record::value::map::Map::other_fields_mut (line 98) ... ok [INFO] [stdout] test src/header/record/value/map/contig.rs - header::record::value::map::contig::Map::length (line 54) ... ok [INFO] [stdout] test src/header/file_format.rs - header::file_format::FileFormat::new (line 24) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::add_sample_name (line 221) ... ok [INFO] [stdout] test src/indexed_reader/builder.rs - indexed_reader::builder::Builder::build_from_path (line 40) - compile ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::insert (line 248) ... ok [INFO] [stdout] test src/indexer.rs - indexer::index (line 12) - compile ... ok [INFO] [stdout] test src/header/record/value/map/contig.rs - header::record::value::map::contig::Map::md5 (line 84) ... ok [INFO] [stdout] test src/lib.rs - (line 9) - compile ... ok [INFO] [stdout] test src/header/record/value/map/alternative_allele.rs - header::record::value::map::alternative_allele::Map::new (line 38) ... ok [INFO] [stdout] test src/header/file_format.rs - header::file_format::FileFormat::major (line 36) ... ok [INFO] [stdout] test src/header/record/value/map/contig.rs - header::record::value::map::contig::Map::length_mut (line 67) ... ok [INFO] [stdout] test src/header/record/value/map/contig.rs - header::record::value::map::contig::Map::md5_mut (line 97) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader (line 37) - compile ... ok [INFO] [stdout] test src/header/record/value/map/filter.rs - header::record::value::map::filter::Map::new (line 70) ... ok [INFO] [stdout] test src/header/record/value/map/contig.rs - header::record::value::map::contig::Map::new (line 42) ... ok [INFO] [stdout] test src/header/record/value/map/contig.rs - header::record::value::map::contig::Map::url_mut (line 127) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader>::query (line 307) - compile ... ok [INFO] [stdout] test src/header/record/value/map/contig.rs - header::record::value::map::contig::Map::url (line 114) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::get_mut (line 98) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::new (line 63) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::get_ref (line 84) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::into_inner (line 112) ... ok [INFO] [stdout] test src/reader/builder.rs - reader::builder::Builder::build_from_path (line 39) - compile ... ok [INFO] [stdout] test src/header/record/value/map/info.rs - header::record::value::map::info::Map::new (line 76) ... ok [INFO] [stdout] test src/header/record/value/map/format.rs - header::record::value::map::format::Map::new (line 76) ... ok [INFO] [stdout] test src/header/record/value/map/other.rs - header::record::value::map::other::Map::new (line 33) ... ok [INFO] [stdout] test src/header/record/value/map/filter.rs - header::record::value::map::filter::Map::pass (line 50) ... ok [INFO] [stdout] test src/indexed_reader/builder.rs - indexed_reader::builder::Builder::set_index (line 24) ... ok [INFO] [stdout] test src/indexed_reader/builder.rs - indexed_reader::builder::Builder::build_from_reader (line 65) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::read_header (line 131) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::read_lazy_record (line 231) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader>::seek (line 287) ... ok [INFO] [stdout] test src/reader/builder.rs - reader::builder::Builder::set_compression_method (line 23) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::read_record (line 163) ... ok [INFO] [stdout] test src/record.rs - record::Record::builder (line 72) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader>::virtual_position (line 259) ... ok [INFO] [stdout] test src/reader/builder.rs - reader::builder::Builder::build_from_reader (line 65) ... ok [INFO] [stdout] test src/record.rs - record::Record::alternate_bases (line 284) ... ok [INFO] [stdout] test src/record.rs - record::Record::chromosome (line 88) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::records (line 198) ... ok [INFO] [stdout] test src/record.rs - record::Record::alternate_bases_mut (line 311) ... ok [INFO] [stdout] test src/record.rs - record::Record::end (line 677) ... ok [INFO] [stdout] test src/record.rs - record::Record::chromosome_mut (line 108) ... ok [INFO] [stdout] test src/record.rs - record::Record::end (line 661) ... ok [INFO] [stdout] test src/record.rs - record::Record::filters (line 389) ... ok [INFO] [stdout] test src/record.rs - record::Record::filters_mut (line 410) ... ok [INFO] [stdout] test src/record.rs - record::Record::genotypes (line 528) ... ok [INFO] [stdout] test src/record.rs - record::Record::format (line 495) ... ok [INFO] [stdout] test src/record.rs - record::Record::genotypes_mut (line 561) ... ok [INFO] [stdout] test src/record.rs - record::Record::ids (line 182) ... ok [INFO] [stdout] test src/record.rs - record::Record::ids_mut (line 203) ... ok [INFO] [stdout] test src/record.rs - record::Record::info (line 432) ... ok [INFO] [stdout] test src/record.rs - record::Record::position (line 136) ... ok [INFO] [stdout] test src/record.rs - record::Record::quality_score (line 343) ... ok [INFO] [stdout] test src/record.rs - record::Record::quality_score_mut (line 364) ... ok [INFO] [stdout] test src/record.rs - record::Record::info_mut (line 462) ... ok [INFO] [stdout] test src/record/alternate_bases/allele/symbol/structural_variant.rs - record::alternate_bases::allele::symbol::structural_variant::StructuralVariant::new (line 23) ... ok [INFO] [stdout] test src/record.rs - record::Record::position_mut (line 160) ... ok [INFO] [stdout] test src/record.rs - record::Record::try_from_str (line 55) ... ok [INFO] [stdout] test src/record/alternate_bases/allele/symbol/structural_variant.rs - record::alternate_bases::allele::symbol::structural_variant::StructuralVariant::subtypes (line 56) ... ok [INFO] [stdout] test src/record.rs - record::Record::reference_bases_mut (line 256) ... ok [INFO] [stdout] test src/record/alternate_bases/allele/symbol/structural_variant.rs - record::alternate_bases::allele::symbol::structural_variant::StructuralVariant::ty (line 39) ... ok [INFO] [stdout] test src/record.rs - record::Record::reference_bases (line 228) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::build (line 305) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::add_reference_base (line 144) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_alternate_bases (line 171) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_filters (line 221) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_chromosome (line 52) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_ids (line 94) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_info (line 243) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_genotypes (line 274) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_reference_bases (line 116) ... ok [INFO] [stdout] test src/record/genotypes.rs - record::genotypes::Genotypes::is_empty (line 83) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_position (line 73) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_quality_score (line 199) ... ok [INFO] [stdout] test src/record/genotypes.rs - record::genotypes::Genotypes::keys (line 96) ... ok [INFO] [stdout] test src/record/filters.rs - record::filters::Filters::try_from_iter (line 47) ... ok [INFO] [stdout] test src/record/genotypes.rs - record::genotypes::Genotypes::new (line 71) ... ok [INFO] [stdout] test src/record/genotypes/sample/value.rs - record::genotypes::sample::value::Value::from_str_format (line 96) ... ok [INFO] [stdout] test src/record/genotypes/sample/value/genotype/allele.rs - record::genotypes::sample::value::genotype::allele::Allele::new (line 21) ... ok [INFO] [stdout] test src/record/genotypes/sample/value/genotype/allele.rs - record::genotypes::sample::value::genotype::allele::Allele::phasing (line 60) ... ok [INFO] [stdout] test src/record/genotypes.rs - record::genotypes::Genotypes::keys_mut (line 115) ... ok [INFO] [stdout] test src/record/genotypes.rs - record::genotypes::Genotypes::parse (line 36) ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::get_mut (line 96) ... ok [INFO] [stdout] test src/record/genotypes/sample/value/genotype/allele.rs - record::genotypes::sample::value::genotype::allele::Allele::position_mut (line 46) ... ok [INFO] [stdout] test src/record/genotypes/sample/value/genotype/allele.rs - record::genotypes::sample::value::genotype::allele::Allele::position (line 33) ... ok [INFO] [stdout] test src/record/genotypes/sample/value/genotype/allele.rs - record::genotypes::sample::value::genotype::allele::Allele::phasing_mut (line 73) ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::get_index (line 120) ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::clear (line 56) ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::values (line 216) ... ok [INFO] [stdout] test src/writer/builder.rs - writer::builder::Builder::build_from_path (line 38) - compile ... ok [INFO] [stdout] test src/writer.rs - writer::Writer::get_mut (line 87) ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::get (line 75) ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::is_empty (line 41) ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::get_index_mut (line 144) ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::len (line 28) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer (line 16) ... ok [INFO] [stdout] test src/record/info/field/value.rs - record::info::field::value::Value::from_str_info (line 101) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer::new (line 62) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer::get_ref (line 74) ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::insert (line 171) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer::into_inner (line 100) ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::keys (line 195) ... ok [INFO] [stdout] test src/writer/builder.rs - writer::builder::Builder::build_from_writer (line 66) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer::write_header (line 113) ... ok [INFO] [stdout] test src/writer/builder.rs - writer::builder::Builder::set_compression_method (line 23) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer::write_record (line 131) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 137 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 8.74s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "8942c07ca09d9bb6d06fb3377fec8203a9147bcc26bffafeb0ba9dfe18d9ee4c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8942c07ca09d9bb6d06fb3377fec8203a9147bcc26bffafeb0ba9dfe18d9ee4c", kill_on_drop: false }` [INFO] [stdout] 8942c07ca09d9bb6d06fb3377fec8203a9147bcc26bffafeb0ba9dfe18d9ee4c [INFO] testing noodles-vcf-0.47.0 against try#5e4273472e1b2f223618a9b3def795f6224f241d for pr-118825 [INFO] extracting crate noodles-vcf 0.47.0 into /workspace/builds/worker-1-tc2/source [INFO] validating manifest of crates.io crate noodles-vcf 0.47.0 on toolchain 5e4273472e1b2f223618a9b3def795f6224f241d [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+5e4273472e1b2f223618a9b3def795f6224f241d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate noodles-vcf 0.47.0 [INFO] removed 0 missing examples [INFO] finished tweaking crates.io crate noodles-vcf 0.47.0 [INFO] tweaked toml for crates.io crate noodles-vcf 0.47.0 written to /workspace/builds/worker-1-tc2/source/Cargo.toml [INFO] crate crates.io crate noodles-vcf 0.47.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+5e4273472e1b2f223618a9b3def795f6224f241d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+5e4273472e1b2f223618a9b3def795f6224f241d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] a2b06b441d38e3d9d753ba29c57bff03239d79a61062f2174c1dfe7dc8ca022e [INFO] running `Command { std: "docker" "start" "-a" "a2b06b441d38e3d9d753ba29c57bff03239d79a61062f2174c1dfe7dc8ca022e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a2b06b441d38e3d9d753ba29c57bff03239d79a61062f2174c1dfe7dc8ca022e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a2b06b441d38e3d9d753ba29c57bff03239d79a61062f2174c1dfe7dc8ca022e", kill_on_drop: false }` [INFO] [stdout] a2b06b441d38e3d9d753ba29c57bff03239d79a61062f2174c1dfe7dc8ca022e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+5e4273472e1b2f223618a9b3def795f6224f241d" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 28f07c1381f37e0544b04c8f3ab0fe5f7e92618f3977fd2a33b275978ea1a007 [INFO] running `Command { std: "docker" "start" "-a" "28f07c1381f37e0544b04c8f3ab0fe5f7e92618f3977fd2a33b275978ea1a007", kill_on_drop: false }` [INFO] [stderr] Compiling crc32fast v1.3.2 [INFO] [stderr] Compiling crossbeam-utils v0.8.16 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling bytes v1.5.0 [INFO] [stderr] Compiling hashbrown v0.14.0 [INFO] [stderr] Compiling equivalent v1.0.1 [INFO] [stderr] Compiling byteorder v1.4.3 [INFO] [stderr] Compiling noodles-core v0.12.0 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling percent-encoding v2.3.0 [INFO] [stderr] Compiling memchr v2.6.3 [INFO] [stderr] Compiling miniz_oxide v0.7.1 [INFO] [stderr] Compiling flate2 v1.0.27 [INFO] [stderr] Compiling indexmap v2.0.0 [INFO] [stderr] Compiling crossbeam-channel v0.5.8 [INFO] [stderr] Compiling noodles-bgzf v0.25.0 [INFO] [stderr] Compiling noodles-csi v0.28.0 [INFO] [stderr] Compiling noodles-tabix v0.34.0 [INFO] [stderr] Compiling noodles-vcf v0.47.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 3.67s [INFO] running `Command { std: "docker" "inspect" "28f07c1381f37e0544b04c8f3ab0fe5f7e92618f3977fd2a33b275978ea1a007", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "28f07c1381f37e0544b04c8f3ab0fe5f7e92618f3977fd2a33b275978ea1a007", kill_on_drop: false }` [INFO] [stdout] 28f07c1381f37e0544b04c8f3ab0fe5f7e92618f3977fd2a33b275978ea1a007 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+5e4273472e1b2f223618a9b3def795f6224f241d" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 71233695e2a0bc0f8abcadaa4dc9e276749395753a857a7e7c3ffb6d79e2274c [INFO] running `Command { std: "docker" "start" "-a" "71233695e2a0bc0f8abcadaa4dc9e276749395753a857a7e7c3ffb6d79e2274c", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.67 [INFO] [stderr] Compiling libc v0.2.148 [INFO] [stderr] Compiling quote v1.0.33 [INFO] [stderr] Compiling num_cpus v1.16.0 [INFO] [stderr] Compiling syn v2.0.37 [INFO] [stderr] Compiling tokio-macros v2.1.0 [INFO] [stderr] Compiling tokio v1.32.0 [INFO] [stderr] Compiling noodles-vcf v0.47.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 8.75s [INFO] running `Command { std: "docker" "inspect" "71233695e2a0bc0f8abcadaa4dc9e276749395753a857a7e7c3ffb6d79e2274c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "71233695e2a0bc0f8abcadaa4dc9e276749395753a857a7e7c3ffb6d79e2274c", kill_on_drop: false }` [INFO] [stdout] 71233695e2a0bc0f8abcadaa4dc9e276749395753a857a7e7c3ffb6d79e2274c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+5e4273472e1b2f223618a9b3def795f6224f241d" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] fd1420aa1b6be4a5aab12171fe1fd0f370285da6a467b0618ed937be5f52daae [INFO] running `Command { std: "docker" "start" "-a" "fd1420aa1b6be4a5aab12171fe1fd0f370285da6a467b0618ed937be5f52daae", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.02s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/noodles_vcf-ab6db8170b445a3f) [INFO] [stdout] [INFO] [stdout] running 185 tests [INFO] [stdout] test header::file_format::tests::test_default ... ok [INFO] [stdout] test header::file_format::tests::test_fmt ... ok [INFO] [stdout] test header::file_format::tests::test_from_str ... ok [INFO] [stdout] test header::builder::tests::test_default ... ok [INFO] [stdout] test header::fmt::tests::test_write_meta_record ... ok [INFO] [stdout] test header::number::tests::test_default ... ok [INFO] [stdout] test header::fmt::tests::test_write_escaped_string ... ok [INFO] [stdout] test header::builder::tests::test_build ... ok [INFO] [stdout] test header::number::tests::test_from_str ... ok [INFO] [stdout] test header::number::tests::test_fmt ... ok [INFO] [stdout] test header::parser::builder::tests::test_default ... ok [INFO] [stdout] test header::parser::record::key::tests::test_parse_key ... ok [INFO] [stdout] test header::parser::record::tests::test_consume_prefix ... ok [INFO] [stdout] test header::parser::record::value::map::alternative_allele::tests::test_parse_filter ... ok [INFO] [stdout] test header::parser::record::value::map::contig::tests::test_parse_contig ... ok [INFO] [stdout] test header::parser::record::value::map::field::key::tests::test_parse_key ... ok [INFO] [stdout] test header::parser::record::value::map::field::tests::test_consume_separator ... ok [INFO] [stdout] test header::parser::record::value::map::field::value::string::tests::test_parse_escaped_string ... ok [INFO] [stdout] test header::parser::record::value::map::field::value::string::tests::test_parse_raw_string ... ok [INFO] [stdout] test header::parser::record::value::map::field::value::tests::test_parse_value ... ok [INFO] [stdout] test header::parser::record::value::map::filter::tests::test_parse_filter ... ok [INFO] [stdout] test header::parser::record::value::map::info::tests::test_parse_info ... ok [INFO] [stdout] test header::parser::record::value::map::other::tests::test_parse_other ... ok [INFO] [stdout] test header::parser::record::value::map::other::tests::test_parse_meta ... ok [INFO] [stdout] test header::parser::record::value::map::tests::test_is_map ... ok [INFO] [stdout] test header::parser::record::value::string::tests::test_parse_string ... ok [INFO] [stdout] test header::parser::record::value::map::format::tests::test_parse_format ... ok [INFO] [stdout] test header::parser::record::value::map::other::tests::test_parse_pedigree ... ok [INFO] [stdout] test header::parser::tests::test_from_str_with_data_after_header ... ok [INFO] [stdout] test header::parser::tests::test_from_str_with_missing_headers ... ok [INFO] [stdout] test header::record::key::other::tests::test_from_str ... ok [INFO] [stdout] test header::parser::tests::test_from_str_with_multiple_fileformats ... ok [INFO] [stdout] test header::parser::tests::test_from_str_with_duplicate_map_id ... ok [INFO] [stdout] test header::record::key::tests::test_fmt ... ok [INFO] [stdout] test header::record::key::tests::test_from ... ok [INFO] [stdout] test header::record::value::map::contig::tag::tests::test_as_ref_str_for_standard ... ok [INFO] [stdout] test header::record::value::map::alternative_allele::tests::test_fmt ... ok [INFO] [stdout] test header::record::value::map::contig::tests::test_fmt ... ok [INFO] [stdout] test header::record::tests::test_from_str ... ok [INFO] [stdout] test header::parser::tests::test_from_str_with_duplicate_sample_names ... ok [INFO] [stdout] test header::record::value::map::format::tests::test_fmt ... ok [INFO] [stdout] test header::record::value::map::format::ty::tests::test_default ... ok [INFO] [stdout] test header::record::value::map::format::ty::tests::test_fmt ... ok [INFO] [stdout] test header::parser::tests::test_from_str ... ok [INFO] [stdout] test header::parser::tests::test_from_str_without_file_format ... ok [INFO] [stdout] test header::parser::tests::test_from_str_with_invalid_headers ... ok [INFO] [stdout] test header::record::value::map::filter::tests::test_fmt ... ok [INFO] [stdout] test header::record::value::map::format::ty::tests::test_from_str ... ok [INFO] [stdout] test header::record::value::map::info::ty::tests::test_fmt ... ok [INFO] [stdout] test header::record::value::map::info::ty::tests::test_from_str ... ok [INFO] [stdout] test header::record::value::map::other::tests::test_fmt ... ok [INFO] [stdout] test indexed_reader::builder::tests::test_push_ext ... ok [INFO] [stdout] test header::record::value::map::info::tests::test_fmt ... ok [INFO] [stdout] test header::tests::test_fmt_with_genotypes ... ok [INFO] [stdout] test header::tests::test_insert_with_duplicate_keys ... ok [INFO] [stdout] test header::record::value::map::info::ty::tests::test_default ... ok [INFO] [stdout] test header::tests::test_default ... ok [INFO] [stdout] test lazy::record::genotypes::tests::test_samples ... ok [INFO] [stdout] test lazy::record::genotypes::tests::test_keys ... ok [INFO] [stdout] test lazy::record::ids::tests::test_is_empty ... ok [INFO] [stdout] test header::tests::test_fmt ... ok [INFO] [stdout] test lazy::record::genotypes::sample::tests::test_values ... ok [INFO] [stdout] test header::record::value::map::tag::other::tests::test_from_str ... ok [INFO] [stdout] test lazy::record::filters::tests::test_iter ... ok [INFO] [stdout] test lazy::record::genotypes::tests::test_is_empty ... ok [INFO] [stdout] test lazy::record::info::tests::test_is_empty ... ok [INFO] [stdout] test lazy::record::ids::tests::test_iter ... ok [INFO] [stdout] test reader::header::tests::test_read_raw_header_with_missing_end_of_line ... ok [INFO] [stdout] test lazy::record::info::tests::test_iter ... ok [INFO] [stdout] test reader::header::tests::test_read_raw_header ... ok [INFO] [stdout] test reader::header::tests::test_read_raw_header_with_multiple_buffer_fills ... ok [INFO] [stdout] test reader::header::tests::test_read_raw_header_with_no_records ... ok [INFO] [stdout] test reader::record::alternate_bases::tests::test_parse_alternate_bases ... ok [INFO] [stdout] test reader::header::tests::test_read_raw_header_with_no_header ... ok [INFO] [stdout] test reader::record::chromosome::tests::test_parse_chromosome ... ok [INFO] [stdout] test reader::record::chromosome::tests::test_is_valid_name ... ok [INFO] [stdout] test reader::record::filters::tests::test_parse_filters ... ok [INFO] [stdout] test reader::record::genotypes::keys::tests::test_parse_keys ... ok [INFO] [stdout] test reader::record::genotypes::tests::test_parse_genotypes ... ok [INFO] [stdout] test reader::record::genotypes::values::tests::test_parse_values ... ok [INFO] [stdout] test reader::record::genotypes::values::value::tests::test_parse_value_with_character ... ok [INFO] [stdout] test reader::record::genotypes::values::value::tests::test_parse_value_with_float ... ok [INFO] [stdout] test reader::record::genotypes::values::value::tests::test_parse_value_with_integer ... ok [INFO] [stdout] test reader::record::genotypes::values::value::tests::test_parse_value_with_string ... ok [INFO] [stdout] test reader::record::ids::id::tests::test_parse_id ... ok [INFO] [stdout] test reader::record::ids::tests::test_parse_ids ... ok [INFO] [stdout] test reader::record::info::field::tests::test_parse_field ... ok [INFO] [stdout] test reader::record::info::field::value::tests::test_parse_value_with_character ... ok [INFO] [stdout] test reader::record::info::field::value::tests::test_parse_value_with_flag ... ok [INFO] [stdout] test reader::record::info::field::value::tests::test_parse_value_with_integer ... ok [INFO] [stdout] test reader::record::info::field::value::tests::test_parse_value_with_float ... ok [INFO] [stdout] test reader::record::position::tests::test_parse_position ... ok [INFO] [stdout] test reader::record::info::tests::test_parse_info ... ok [INFO] [stdout] test reader::record::info::field::value::tests::test_parse_value_with_string ... ok [INFO] [stdout] test reader::record::quality_score::tests::test_parse_position ... ok [INFO] [stdout] test reader::record::reference_bases::base::tests::test_parse_base ... ok [INFO] [stdout] test reader::record::reference_bases::tests::test_parse_reference_bases ... ok [INFO] [stdout] test reader::tests::test_read_lazy_record ... ok [INFO] [stdout] test reader::tests::test_read_line ... ok [INFO] [stdout] test record::alternate_bases::allele::symbol::structural_variant::tests::test_fmt ... ok [INFO] [stdout] test reader::tests::test_read_record ... ok [INFO] [stdout] test record::alternate_bases::allele::symbol::structural_variant::tests::test_from_str ... ok [INFO] [stdout] test record::alternate_bases::allele::symbol::structural_variant::tests::test_from_type_for_symbol ... ok [INFO] [stdout] test record::alternate_bases::allele::symbol::structural_variant::ty::tests::test_fmt ... ok [INFO] [stdout] test record::alternate_bases::allele::symbol::structural_variant::ty::tests::test_from_str ... ok [INFO] [stdout] test record::alternate_bases::allele::symbol::tests::test_fmt ... ok [INFO] [stdout] test record::alternate_bases::allele::symbol::tests::test_from_str ... ok [INFO] [stdout] test record::alternate_bases::tests::test_fmt ... ok [INFO] [stdout] test record::alternate_bases::tests::test_from_str ... ok [INFO] [stdout] test record::alternate_bases::allele::tests::test_fmt ... ok [INFO] [stdout] test record::chromosome::tests::test_fmt ... ok [INFO] [stdout] test record::alternate_bases::allele::tests::test_from_str ... ok [INFO] [stdout] test record::chromosome::tests::test_from_str ... ok [INFO] [stdout] test record::filters::tests::test_fmt ... ok [INFO] [stdout] test record::builder::tests::test_build ... ok [INFO] [stdout] test record::genotypes::keys::key::tests::test_fmt ... ok [INFO] [stdout] test record::genotypes::keys::key::tests::test_from_str ... ok [INFO] [stdout] test record::builder::tests::test_default ... ok [INFO] [stdout] test record::genotypes::keys::tests::test_fmt ... ok [INFO] [stdout] test record::filters::tests::test_try_from_iter ... ok [INFO] [stdout] test record::filters::tests::test_from_str ... ok [INFO] [stdout] test record::genotypes::sample::value::genotype::tests::test_from_str ... ok [INFO] [stdout] test record::genotypes::sample::value::genotype::tests::test_try_from_alleles_for_genotype ... ok [INFO] [stdout] test record::genotypes::sample::value::tests::test_fmt ... ok [INFO] [stdout] test record::genotypes::sample::value::tests::test_parse_with_character ... ok [INFO] [stdout] test record::genotypes::sample::value::tests::test_parse_with_float ... ok [INFO] [stdout] test record::genotypes::sample::value::tests::test_parse_with_integer ... ok [INFO] [stdout] test record::genotypes::sample::value::tests::test_parse_with_string ... ok [INFO] [stdout] test record::genotypes::sample::value::genotype::allele::phasing::tests::test_fmt ... ok [INFO] [stdout] test record::genotypes::tests::test_fmt ... ok [INFO] [stdout] test record::genotypes::sample::value::genotype::allele::phasing::tests::test_from_str ... ok [INFO] [stdout] test record::genotypes::keys::tests::test_from_str ... ok [INFO] [stdout] test record::genotypes::sample::tests::test_genotype ... ok [INFO] [stdout] test record::genotypes::sample::value::genotype::allele::tests::test_from_str ... ok [INFO] [stdout] test record::genotypes::keys::tests::test_try_from_vec_key_for_format ... ok [INFO] [stdout] test record::genotypes::tests::test_from_str ... ok [INFO] [stdout] test record::ids::tests::test_fmt ... ok [INFO] [stdout] test record::info::field::key::tests::test_fmt ... ok [INFO] [stdout] test record::ids::tests::test_from_str ... ok [INFO] [stdout] test record::info::field::key::tests::test_from_str ... ok [INFO] [stdout] test record::info::field::value::tests::test_fmt ... ok [INFO] [stdout] test record::info::field::tests::test_parse ... ok [INFO] [stdout] test record::info::field::value::tests::test_parse_with_character ... ok [INFO] [stdout] test record::ids::id::tests::test_from_str ... ok [INFO] [stdout] test record::genotypes::tests::test_genotypes ... ok [INFO] [stdout] test record::info::field::value::tests::test_parse_with_integer ... ok [INFO] [stdout] test record::info::field::value::tests::test_parse_with_string ... ok [INFO] [stdout] test record::info::tests::test_extend ... ok [INFO] [stdout] test record::info::field::value::tests::test_parse_with_flag ... ok [INFO] [stdout] test record::info::field::value::tests::test_parse_with_float ... ok [INFO] [stdout] test record::position::tests::test_fmt ... ok [INFO] [stdout] test record::position::tests::test_from_position_for_usize ... ok [INFO] [stdout] test record::parser::tests::test_parse_with_genotype_info ... ok [INFO] [stdout] test record::info::tests::test_fmt ... ok [INFO] [stdout] test record::position::tests::test_from_str ... ok [INFO] [stdout] test record::position::tests::test_from_usize_for_position ... ok [INFO] [stdout] test record::position::tests::test_partial_eq_core_position_for_position ... ok [INFO] [stdout] test record::parser::tests::test_parse ... ok [INFO] [stdout] test record::quality_score::tests::test_fmt ... ok [INFO] [stdout] test record::info::tests::test_from_str ... ok [INFO] [stdout] test record::quality_score::tests::test_from_quality_score_for_f32 ... ok [INFO] [stdout] test record::quality_score::tests::test_from_str ... ok [INFO] [stdout] test record::reference_bases::base::tests::test_try_from_char_for_base ... ok [INFO] [stdout] test record::reference_bases::tests::test_fmt ... ok [INFO] [stdout] test record::quality_score::tests::test_try_from_float_for_quality_score ... ok [INFO] [stdout] test record::reference_bases::tests::test_from_str ... ok [INFO] [stdout] test record::reference_bases::base::tests::test_from_base_for_char ... ok [INFO] [stdout] test record::position::tests::test_partial_ord_core_position_for_position ... ok [INFO] [stdout] test record::reference_bases::tests::test_try_from_vec_bases_for_reference_bases ... ok [INFO] [stdout] test record::tests::test_end ... ok [INFO] [stdout] test record::tests::test_fmt ... ok [INFO] [stdout] test record::tests::test_fmt_with_format ... ok [INFO] [stdout] test record::tests::test_default ... ok [INFO] [stdout] test writer::record::filters::tests::test_write_filters ... ok [INFO] [stdout] test writer::record::genotypes::tests::test_write_genotypes ... ok [INFO] [stdout] test writer::record::info::tests::test_write_info ... ok [INFO] [stdout] test writer::record::ids::tests::test_write_ids ... ok [INFO] [stdout] test writer::record::genotypes::tests::test_write_value ... ok [INFO] [stdout] test writer::tests::test_write_record ... ok [INFO] [stdout] test writer::tests::test_write_record_with_format ... ok [INFO] [stdout] test record::value::tests::test_percent_decode ... ok [INFO] [stdout] test writer::record::chromosome::tests::test_write_chromosome ... ok [INFO] [stdout] test writer::record::quality_score::tests::test_write_quality_score ... ok [INFO] [stdout] test writer::record::tests::test_write_record ... ok [INFO] [stdout] test writer::tests::test_write_header ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 185 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Doc-tests noodles-vcf [INFO] [stdout] [INFO] [stdout] running 137 tests [INFO] [stdout] test src/header.rs - header::Header::builder (line 64) ... ok [INFO] [stdout] test src/header.rs - header::Header::other_records (line 408) ... ok [INFO] [stdout] test src/header.rs - header::Header::contigs_mut (line 338) ... ok [INFO] [stdout] test src/header.rs - header::Header::file_format_mut (line 97) ... ok [INFO] [stdout] test src/header.rs - header::Header::contigs (line 315) ... ok [INFO] [stdout] test src/header.rs - header::Header::file_format (line 78) ... ok [INFO] [stdout] test src/header.rs - header::Header::filters_mut (line 187) ... ok [INFO] [stdout] test src/header.rs - header::Header::filters (line 166) ... ok [INFO] [stdout] test src/header.rs - header::Header::formats (line 207) ... ok [INFO] [stdout] test src/header.rs - header::Header::insert (line 485) ... ok [INFO] [stdout] test src/header.rs - header::Header::infos_mut (line 141) ... ok [INFO] [stdout] test src/header.rs - header::Header::alternative_alleles_mut (line 287) ... ok [INFO] [stdout] test src/header.rs - header::Header::alternative_alleles (line 258) ... ok [INFO] [stdout] test src/header.rs - header::Header::infos (line 115) ... ok [INFO] [stdout] test src/header.rs - header::Header::get (line 456) ... ok [INFO] [stdout] test src/header.rs - header::Header::formats_mut (line 233) ... ok [INFO] [stdout] test src/header.rs - header::Header::sample_names (line 360) ... ok [INFO] [stdout] test src/header.rs - header::Header::other_records_mut (line 431) ... ok [INFO] [stdout] test src/header.rs - header::Header::sample_names_mut (line 384) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::add_alternative_allele (line 134) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::build (line 286) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::add_contig (line 168) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::add_filter (line 78) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::add_sample_name (line 221) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::add_info (line 51) ... ok [INFO] [stdout] test src/header/file_format.rs - header::file_format::FileFormat::minor (line 49) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::set_file_format (line 33) ... ok [INFO] [stdout] test src/header/file_format.rs - header::file_format::FileFormat::major (line 36) ... ok [INFO] [stdout] test src/header/file_format.rs - header::file_format::FileFormat::new (line 24) ... ok [INFO] [stdout] test src/header/record/value/map.rs - header::record::value::map::Map::other_fields_mut (line 98) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::set_sample_names (line 196) ... ok [INFO] [stdout] test src/header/record/key.rs - header::record::key::Key::other (line 91) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::insert (line 248) ... ok [INFO] [stdout] test src/indexed_reader/builder.rs - indexed_reader::builder::Builder::build_from_path (line 40) - compile ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::add_format (line 103) ... ok [INFO] [stdout] test src/header/record/value/map/contig.rs - header::record::value::map::contig::Map::length (line 54) ... ok [INFO] [stdout] test src/header/record/value/map/alternative_allele.rs - header::record::value::map::alternative_allele::Map::new (line 38) ... ok [INFO] [stdout] test src/indexer.rs - indexer::index (line 12) - compile ... ok [INFO] [stdout] test src/lib.rs - (line 9) - compile ... ok [INFO] [stdout] test src/header/record/value/map/contig.rs - header::record::value::map::contig::Map::length_mut (line 67) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader (line 37) - compile ... ok [INFO] [stdout] test src/header/record/value/map/contig.rs - header::record::value::map::contig::Map::md5_mut (line 97) ... ok [INFO] [stdout] test src/header/record/value/map/contig.rs - header::record::value::map::contig::Map::md5 (line 84) ... ok [INFO] [stdout] test src/header/record/value/map/contig.rs - header::record::value::map::contig::Map::new (line 42) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::get_ref (line 84) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::into_inner (line 112) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::get_mut (line 98) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::new (line 63) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader>::query (line 307) - compile ... ok [INFO] [stdout] test src/header/record/value/map/contig.rs - header::record::value::map::contig::Map::url_mut (line 127) ... ok [INFO] [stdout] test src/reader/builder.rs - reader::builder::Builder::build_from_path (line 39) - compile ... ok [INFO] [stdout] test src/header/record/value/map/contig.rs - header::record::value::map::contig::Map::url (line 114) ... ok [INFO] [stdout] test src/header/record/value/map/filter.rs - header::record::value::map::filter::Map::pass (line 50) ... ok [INFO] [stdout] test src/header/record/value/map/format.rs - header::record::value::map::format::Map::new (line 76) ... ok [INFO] [stdout] test src/indexed_reader/builder.rs - indexed_reader::builder::Builder::set_index (line 24) ... ok [INFO] [stdout] test src/header/record/value/map/other.rs - header::record::value::map::other::Map::new (line 33) ... ok [INFO] [stdout] test src/indexed_reader/builder.rs - indexed_reader::builder::Builder::build_from_reader (line 65) ... ok [INFO] [stdout] test src/header/record/value/map/info.rs - header::record::value::map::info::Map::new (line 76) ... ok [INFO] [stdout] test src/header/record/value/map/filter.rs - header::record::value::map::filter::Map::new (line 70) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::read_lazy_record (line 231) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader>::virtual_position (line 259) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::read_header (line 131) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::read_record (line 163) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader>::seek (line 287) ... ok [INFO] [stdout] test src/reader/builder.rs - reader::builder::Builder::build_from_reader (line 65) ... ok [INFO] [stdout] test src/reader/builder.rs - reader::builder::Builder::set_compression_method (line 23) ... ok [INFO] [stdout] test src/record.rs - record::Record::builder (line 72) ... ok [INFO] [stdout] test src/record.rs - record::Record::chromosome (line 88) ... ok [INFO] [stdout] test src/record.rs - record::Record::alternate_bases (line 284) ... ok [INFO] [stdout] test src/record.rs - record::Record::chromosome_mut (line 108) ... ok [INFO] [stdout] test src/record.rs - record::Record::end (line 661) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::records (line 198) ... ok [INFO] [stdout] test src/record.rs - record::Record::alternate_bases_mut (line 311) ... ok [INFO] [stdout] test src/record.rs - record::Record::end (line 677) ... ok [INFO] [stdout] test src/record.rs - record::Record::filters (line 389) ... ok [INFO] [stdout] test src/record.rs - record::Record::filters_mut (line 410) ... ok [INFO] [stdout] test src/record.rs - record::Record::ids (line 182) ... ok [INFO] [stdout] test src/record.rs - record::Record::format (line 495) ... ok [INFO] [stdout] test src/record.rs - record::Record::genotypes (line 528) ... ok [INFO] [stdout] test src/record.rs - record::Record::genotypes_mut (line 561) ... ok [INFO] [stdout] test src/record.rs - record::Record::position (line 136) ... ok [INFO] [stdout] test src/record.rs - record::Record::position_mut (line 160) ... ok [INFO] [stdout] test src/record.rs - record::Record::ids_mut (line 203) ... ok [INFO] [stdout] test src/record.rs - record::Record::info (line 432) ... ok [INFO] [stdout] test src/record.rs - record::Record::info_mut (line 462) ... ok [INFO] [stdout] test src/record.rs - record::Record::reference_bases_mut (line 256) ... ok [INFO] [stdout] test src/record.rs - record::Record::quality_score (line 343) ... ok [INFO] [stdout] test src/record.rs - record::Record::try_from_str (line 55) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::build (line 305) ... ok [INFO] [stdout] test src/record/alternate_bases/allele/symbol/structural_variant.rs - record::alternate_bases::allele::symbol::structural_variant::StructuralVariant::subtypes (line 56) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_info (line 243) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::add_reference_base (line 144) ... ok [INFO] [stdout] test src/record.rs - record::Record::quality_score_mut (line 364) ... ok [INFO] [stdout] test src/record/alternate_bases/allele/symbol/structural_variant.rs - record::alternate_bases::allele::symbol::structural_variant::StructuralVariant::ty (line 39) ... ok [INFO] [stdout] test src/record/alternate_bases/allele/symbol/structural_variant.rs - record::alternate_bases::allele::symbol::structural_variant::StructuralVariant::new (line 23) ... ok [INFO] [stdout] test src/record.rs - record::Record::reference_bases (line 228) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_alternate_bases (line 171) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_filters (line 221) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_ids (line 94) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_chromosome (line 52) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_genotypes (line 274) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_position (line 73) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_quality_score (line 199) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_reference_bases (line 116) ... ok [INFO] [stdout] test src/record/filters.rs - record::filters::Filters::try_from_iter (line 47) ... ok [INFO] [stdout] test src/record/genotypes.rs - record::genotypes::Genotypes::is_empty (line 83) ... ok [INFO] [stdout] test src/record/genotypes.rs - record::genotypes::Genotypes::new (line 71) ... ok [INFO] [stdout] test src/record/genotypes/sample/value/genotype/allele.rs - record::genotypes::sample::value::genotype::allele::Allele::new (line 21) ... ok [INFO] [stdout] test src/record/genotypes/sample/value/genotype/allele.rs - record::genotypes::sample::value::genotype::allele::Allele::position_mut (line 46) ... ok [INFO] [stdout] test src/record/genotypes.rs - record::genotypes::Genotypes::keys (line 96) ... ok [INFO] [stdout] test src/record/genotypes.rs - record::genotypes::Genotypes::keys_mut (line 115) ... ok [INFO] [stdout] test src/record/genotypes/sample/value/genotype/allele.rs - record::genotypes::sample::value::genotype::allele::Allele::position (line 33) ... ok [INFO] [stdout] test src/record/genotypes/sample/value/genotype/allele.rs - record::genotypes::sample::value::genotype::allele::Allele::phasing_mut (line 73) ... ok [INFO] [stdout] test src/record/genotypes/sample/value/genotype/allele.rs - record::genotypes::sample::value::genotype::allele::Allele::phasing (line 60) ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::get (line 75) ... ok [INFO] [stdout] test src/record/genotypes.rs - record::genotypes::Genotypes::parse (line 36) ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::get_index (line 120) ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::get_index_mut (line 144) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer::get_mut (line 87) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer::into_inner (line 100) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer::new (line 62) ... ok [INFO] [stdout] test src/writer/builder.rs - writer::builder::Builder::build_from_path (line 38) - compile ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::insert (line 171) ... ok [INFO] [stdout] test src/record/genotypes/sample/value.rs - record::genotypes::sample::value::Value::from_str_format (line 96) ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::len (line 28) ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::clear (line 56) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer::get_ref (line 74) ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::is_empty (line 41) ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::keys (line 195) ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::get_mut (line 96) ... ok [INFO] [stdout] test src/record/info/field/value.rs - record::info::field::value::Value::from_str_info (line 101) ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::values (line 216) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer (line 16) ... FAILED [INFO] [stdout] test src/writer/builder.rs - writer::builder::Builder::build_from_writer (line 66) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer::write_record (line 131) ... ok [INFO] [stdout] test src/writer/builder.rs - writer::builder::Builder::set_compression_method (line 23) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer::write_header (line 113) ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- src/writer.rs - writer::Writer (line 16) stdout ---- [INFO] [stdout] Test executable failed (exit status: 101). [INFO] [stdout] [INFO] [stdout] stderr: [INFO] [stdout] thread 'main' panicked at src/writer.rs:34:1: [INFO] [stdout] assertion `left == right` failed [INFO] [stdout] left: [35, 35, 102, 105, 108, 101, 102, 111, 114, 109, 97, 116, 61, 86, 67, 70, 118, 52, 46, 52, 10, 35, 35, 99, 111, 110, 116, 105, 103, 61, 60, 73, 68, 61, 115, 113, 48, 62, 10, 35, 67, 72, 82, 79, 77, 9, 80, 79, 83, 9, 73, 68, 9, 82, 69, 70, 9, 65, 76, 84, 9, 81, 85, 65, 76, 9, 70, 73, 76, 84, 69, 82, 9, 73, 78, 70, 79, 10, 115, 113, 48, 9, 49, 9, 46, 9, 65, 9, 46, 9, 46, 9, 46, 9, 46, 10] [INFO] [stdout] right: [35, 35, 102, 105, 108, 101, 102, 111, 114, 109, 97, 116, 61, 86, 67, 70, 118, 52, 46, 52, 10, 35, 35, 35, 99, 111, 110, 116, 105, 103, 61, 60, 73, 68, 61, 115, 113, 48, 62, 10, 35, 67, 72, 82, 79, 77, 9, 80, 79, 83, 9, 73, 68, 9, 82, 69, 70, 9, 65, 76, 84, 9, 81, 85, 65, 76, 9, 70, 73, 76, 84, 69, 82, 9, 73, 78, 70, 79, 10, 115, 113, 48, 9, 49, 9, 46, 9, 65, 9, 46, 9, 46, 9, 46, 9, 46, 10] [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x55e02b02412c - std::backtrace_rs::backtrace::libunwind::trace::he911f9c907837597 [INFO] [stdout] at /rustc/5e4273472e1b2f223618a9b3def795f6224f241d/library/std/src/../../backtrace/src/backtrace/libunwind.rs:104:5 [INFO] [stdout] 1: 0x55e02b02412c - std::backtrace_rs::backtrace::trace_unsynchronized::hb30926ceb4a5ace8 [INFO] [stdout] at /rustc/5e4273472e1b2f223618a9b3def795f6224f241d/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x55e02b02412c - std::sys_common::backtrace::_print_fmt::h20b4c3cb4b8e01de [INFO] [stdout] at /rustc/5e4273472e1b2f223618a9b3def795f6224f241d/library/std/src/sys_common/backtrace.rs:68:5 [INFO] [stdout] 3: 0x55e02b02412c - ::fmt::hcb347474accdbb50 [INFO] [stdout] at /rustc/5e4273472e1b2f223618a9b3def795f6224f241d/library/std/src/sys_common/backtrace.rs:44:22 [INFO] [stdout] 4: 0x55e02b047600 - core::fmt::rt::Argument::fmt::h0959df1f48ddd7a2 [INFO] [stdout] at /rustc/5e4273472e1b2f223618a9b3def795f6224f241d/library/core/src/fmt/rt.rs:142:9 [INFO] [stdout] 5: 0x55e02b047600 - core::fmt::write::hb02961b4380cf4e7 [INFO] [stdout] at /rustc/5e4273472e1b2f223618a9b3def795f6224f241d/library/core/src/fmt/mod.rs:1120:17 [INFO] [stdout] 6: 0x55e02b02254f - std::io::Write::write_fmt::h06a33737db749226 [INFO] [stdout] at /rustc/5e4273472e1b2f223618a9b3def795f6224f241d/library/std/src/io/mod.rs:1810:15 [INFO] [stdout] 7: 0x55e02b023f14 - std::sys_common::backtrace::_print::h9f31dc4772e05e46 [INFO] [stdout] at /rustc/5e4273472e1b2f223618a9b3def795f6224f241d/library/std/src/sys_common/backtrace.rs:47:5 [INFO] [stdout] 8: 0x55e02b023f14 - std::sys_common::backtrace::print::he1974c4a8ca14219 [INFO] [stdout] at /rustc/5e4273472e1b2f223618a9b3def795f6224f241d/library/std/src/sys_common/backtrace.rs:34:9 [INFO] [stdout] 9: 0x55e02b025427 - std::panicking::default_hook::{{closure}}::h9663c9f0f27e933c [INFO] [stdout] 10: 0x55e02b02518f - std::panicking::default_hook::h232155e937189ed1 [INFO] [stdout] at /rustc/5e4273472e1b2f223618a9b3def795f6224f241d/library/std/src/panicking.rs:292:9 [INFO] [stdout] 11: 0x55e02b0258a8 - std::panicking::rust_panic_with_hook::hc8764d1694e821a7 [INFO] [stdout] at /rustc/5e4273472e1b2f223618a9b3def795f6224f241d/library/std/src/panicking.rs:779:13 [INFO] [stdout] 12: 0x55e02b02578e - std::panicking::begin_panic_handler::{{closure}}::hf3ed629468815f4d [INFO] [stdout] at /rustc/5e4273472e1b2f223618a9b3def795f6224f241d/library/std/src/panicking.rs:657:13 [INFO] [stdout] 13: 0x55e02b0245f6 - std::sys_common::backtrace::__rust_end_short_backtrace::h4e08af68b8432e1a [INFO] [stdout] at /rustc/5e4273472e1b2f223618a9b3def795f6224f241d/library/std/src/sys_common/backtrace.rs:171:18 [INFO] [stdout] 14: 0x55e02b0254f2 - rust_begin_unwind [INFO] [stdout] at /rustc/5e4273472e1b2f223618a9b3def795f6224f241d/library/std/src/panicking.rs:645:5 [INFO] [stdout] 15: 0x55e02afd4e55 - core::panicking::panic_fmt::hd274135c92cc1bf8 [INFO] [stdout] at /rustc/5e4273472e1b2f223618a9b3def795f6224f241d/library/core/src/panicking.rs:72:14 [INFO] [stdout] 16: 0x55e02afd519b - core::panicking::assert_failed_inner::h0e7060ac34fab196 [INFO] [stdout] 17: 0x55e02afd980a - core::panicking::assert_failed::h6bdd4912eb440e3e [INFO] [stdout] 18: 0x55e02afda958 - rust_out::main::_doctest_main_src_writer_rs_16_0::h454a673f36bf5666 [INFO] [stdout] 19: 0x55e02afda136 - rust_out::main::h81479dec0a8569aa [INFO] [stdout] 20: 0x55e02afd90e3 - core::ops::function::FnOnce::call_once::hd365e7ad6af5b941 [INFO] [stdout] 21: 0x55e02afd8d46 - std::sys_common::backtrace::__rust_begin_short_backtrace::h316a4ab0edcba2b2 [INFO] [stdout] 22: 0x55e02afd8ec9 - std::rt::lang_start::{{closure}}::h27a5533ecdb667fa [INFO] [stdout] 23: 0x55e02b01ff67 - core::ops::function::impls:: for &F>::call_once::h9e6f1669209dd4ca [INFO] [stdout] at /rustc/5e4273472e1b2f223618a9b3def795f6224f241d/library/core/src/ops/function.rs:284:13 [INFO] [stdout] 24: 0x55e02b01ff67 - std::panicking::try::do_call::haae448a57c8a585d [INFO] [stdout] at /rustc/5e4273472e1b2f223618a9b3def795f6224f241d/library/std/src/panicking.rs:552:40 [INFO] [stdout] 25: 0x55e02b01ff67 - std::panicking::try::h260323567f6039ab [INFO] [stdout] at /rustc/5e4273472e1b2f223618a9b3def795f6224f241d/library/std/src/panicking.rs:516:19 [INFO] [stdout] 26: 0x55e02b01ff67 - std::panic::catch_unwind::h24d48f9ac69ffa4e [INFO] [stdout] at /rustc/5e4273472e1b2f223618a9b3def795f6224f241d/library/std/src/panic.rs:142:14 [INFO] [stdout] 27: 0x55e02b01ff67 - std::rt::lang_start_internal::{{closure}}::h8bb88197ee988b89 [INFO] [stdout] at /rustc/5e4273472e1b2f223618a9b3def795f6224f241d/library/std/src/rt.rs:148:48 [INFO] [stdout] 28: 0x55e02b01ff67 - std::panicking::try::do_call::h89e62ae03b270617 [INFO] [stdout] at /rustc/5e4273472e1b2f223618a9b3def795f6224f241d/library/std/src/panicking.rs:552:40 [INFO] [stdout] 29: 0x55e02b01ff67 - std::panicking::try::hc541fd39b1bc427c [INFO] [stdout] at /rustc/5e4273472e1b2f223618a9b3def795f6224f241d/library/std/src/panicking.rs:516:19 [INFO] [stdout] 30: 0x55e02b01ff67 - std::panic::catch_unwind::hf13b5c045f6c447e [INFO] [stdout] at /rustc/5e4273472e1b2f223618a9b3def795f6224f241d/library/std/src/panic.rs:142:14 [INFO] [stdout] 31: 0x55e02b01ff67 - std::rt::lang_start_internal::h32e28f900a753f65 [INFO] [stdout] at /rustc/5e4273472e1b2f223618a9b3def795f6224f241d/library/std/src/rt.rs:148:20 [INFO] [stdout] 32: 0x55e02afd8ea7 - std::rt::lang_start::h6bdc62f354296cd2 [INFO] [stdout] 33: 0x55e02afdabb5 - main [INFO] [stdout] 34: 0x7fc804ae3d90 - [INFO] [stdout] 35: 0x7fc804ae3e40 - __libc_start_main [INFO] [stdout] 36: 0x55e02afd55d5 - _start [INFO] [stdout] 37: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] src/writer.rs - writer::Writer (line 16) [INFO] [stdout] [INFO] [stdout] test result: FAILED. 136 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 9.74s [INFO] [stdout] [INFO] [stderr] error: doctest failed, to rerun pass `--doc` [INFO] running `Command { std: "docker" "inspect" "fd1420aa1b6be4a5aab12171fe1fd0f370285da6a467b0618ed937be5f52daae", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fd1420aa1b6be4a5aab12171fe1fd0f370285da6a467b0618ed937be5f52daae", kill_on_drop: false }` [INFO] [stdout] fd1420aa1b6be4a5aab12171fe1fd0f370285da6a467b0618ed937be5f52daae