[INFO] fetching crate debruijn 0.3.4... [INFO] testing debruijn-0.3.4 against master#ff2c56344c764af598ad33027e9c7a48881808ef for pr-118825 [INFO] extracting crate debruijn 0.3.4 into /workspace/builds/worker-6-tc1/source [INFO] validating manifest of crates.io crate debruijn 0.3.4 on toolchain ff2c56344c764af598ad33027e9c7a48881808ef [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ff2c56344c764af598ad33027e9c7a48881808ef" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate debruijn 0.3.4 [INFO] finished tweaking crates.io crate debruijn 0.3.4 [INFO] tweaked toml for crates.io crate debruijn 0.3.4 written to /workspace/builds/worker-6-tc1/source/Cargo.toml [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ff2c56344c764af598ad33027e9c7a48881808ef" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ff2c56344c764af598ad33027e9c7a48881808ef" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded bit-set v0.5.3 [INFO] [stderr] Downloaded pretty_assertions v0.5.1 [INFO] [stderr] Downloaded wyhash v0.5.0 [INFO] [stderr] Downloaded boomphf v0.5.9 [INFO] [stderr] Downloaded cloudabi v0.0.3 [INFO] [stderr] Downloaded ansi_term v0.11.0 [INFO] [stderr] Downloaded rand v0.5.6 [INFO] [stderr] Downloaded difference v2.0.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+ff2c56344c764af598ad33027e9c7a48881808ef" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] c099198b4378110711eeda21187c513a93508e5a1870beb8b8d9ec21d06e6b9f [INFO] running `Command { std: "docker" "start" "-a" "c099198b4378110711eeda21187c513a93508e5a1870beb8b8d9ec21d06e6b9f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "c099198b4378110711eeda21187c513a93508e5a1870beb8b8d9ec21d06e6b9f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c099198b4378110711eeda21187c513a93508e5a1870beb8b8d9ec21d06e6b9f", kill_on_drop: false }` [INFO] [stdout] c099198b4378110711eeda21187c513a93508e5a1870beb8b8d9ec21d06e6b9f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+ff2c56344c764af598ad33027e9c7a48881808ef" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] cf37b700543423341b9372f04c149d2c81f42f7b1172e3b4c3dec3363935413b [INFO] running `Command { std: "docker" "start" "-a" "cf37b700543423341b9372f04c149d2c81f42f7b1172e3b4c3dec3363935413b", kill_on_drop: false }` [INFO] [stderr] Compiling memoffset v0.9.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.17 [INFO] [stderr] Compiling rayon-core v1.12.0 [INFO] [stderr] Compiling either v1.9.0 [INFO] [stderr] Compiling num-traits v0.2.17 [INFO] [stderr] Compiling serde_json v1.0.108 [INFO] [stderr] Compiling log v0.4.20 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling smallvec v1.11.2 [INFO] [stderr] Compiling wyhash v0.5.0 [INFO] [stderr] Compiling bit-set v0.5.3 [INFO] [stderr] Compiling itertools v0.12.0 [INFO] [stderr] Compiling crossbeam-epoch v0.9.16 [INFO] [stderr] Compiling crossbeam-deque v0.8.4 [INFO] [stderr] Compiling rayon v1.8.0 [INFO] [stderr] Compiling boomphf v0.5.9 [INFO] [stderr] Compiling debruijn v0.3.4 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 7.09s [INFO] running `Command { std: "docker" "inspect" "cf37b700543423341b9372f04c149d2c81f42f7b1172e3b4c3dec3363935413b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cf37b700543423341b9372f04c149d2c81f42f7b1172e3b4c3dec3363935413b", kill_on_drop: false }` [INFO] [stdout] cf37b700543423341b9372f04c149d2c81f42f7b1172e3b4c3dec3363935413b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+ff2c56344c764af598ad33027e9c7a48881808ef" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 83826c242f204a644b174672f5bd94b67ee32a12398e97e4bdd93224ecbc136d [INFO] running `Command { std: "docker" "start" "-a" "83826c242f204a644b174672f5bd94b67ee32a12398e97e4bdd93224ecbc136d", kill_on_drop: false }` [INFO] [stderr] Compiling rand_core v0.4.2 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling difference v2.0.0 [INFO] [stderr] Compiling pretty_assertions v0.5.1 [INFO] [stderr] Compiling rand_core v0.3.1 [INFO] [stderr] Compiling rand v0.5.6 [INFO] [stderr] Compiling debruijn v0.3.4 (/opt/rustwide/workdir) [INFO] [stdout] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stdout] --> src/msp.rs:394:33 [INFO] [stdout] | [INFO] [stdout] 394 | let slices = super::simple_scan::<_, Kmer8>(k, &DnaSlice(&dna), &permutation, true); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stdout] --> src/msp.rs:586:25 [INFO] [stdout] | [INFO] [stdout] 586 | let s1 = super::simple_scan::<_, Kmer5>(35, &DnaSlice(&mut &v1), &permutation, true); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stdout] --> src/msp.rs:587:25 [INFO] [stdout] | [INFO] [stdout] 587 | let s2 = super::simple_scan::<_, Kmer5>(35, &DnaSlice(&mut &v2), &permutation, true); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 5.95s [INFO] running `Command { std: "docker" "inspect" "83826c242f204a644b174672f5bd94b67ee32a12398e97e4bdd93224ecbc136d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "83826c242f204a644b174672f5bd94b67ee32a12398e97e4bdd93224ecbc136d", kill_on_drop: false }` [INFO] [stdout] 83826c242f204a644b174672f5bd94b67ee32a12398e97e4bdd93224ecbc136d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+ff2c56344c764af598ad33027e9c7a48881808ef" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 61731eb3c320c6310836e8778ebe994c3a17def77ccec7a8ada90f9511b8f529 [INFO] running `Command { std: "docker" "start" "-a" "61731eb3c320c6310836e8778ebe994c3a17def77ccec7a8ada90f9511b8f529", kill_on_drop: false }` [INFO] [stderr] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stderr] --> src/msp.rs:394:33 [INFO] [stderr] | [INFO] [stderr] 394 | let slices = super::simple_scan::<_, Kmer8>(k, &DnaSlice(&dna), &permutation, true); [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stderr] --> src/msp.rs:586:25 [INFO] [stderr] | [INFO] [stderr] 586 | let s1 = super::simple_scan::<_, Kmer5>(35, &DnaSlice(&mut &v1), &permutation, true); [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stderr] --> src/msp.rs:587:25 [INFO] [stderr] | [INFO] [stderr] 587 | let s2 = super::simple_scan::<_, Kmer5>(35, &DnaSlice(&mut &v2), &permutation, true); [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: `debruijn` (lib test) generated 3 warnings [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.09s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/debruijn-058c4cafe69d6437) [INFO] [stdout] [INFO] [stdout] running 52 tests [INFO] [stdout] test dna_string::tests::test_dna_string ... ok [INFO] [stdout] test dna_string::tests::test_prefix ... ok [INFO] [stdout] test bitops_avx2::test::test_convert_bytes_for_debug ... ok [INFO] [stdout] test dna_string::tests::dnastringslice_slice ... ok [INFO] [stdout] test dna_string::tests::test_ndiffs ... ok [INFO] [stdout] test dna_string::tests::dnastringslice_get_kmer ... ok [INFO] [stdout] test dna_string::tests::test_from_dna_string ... ok [INFO] [stdout] test dna_string::tests::test_kmers_too_short ... ok [INFO] [stdout] test dna_string::tests::test_reverse ... ok [INFO] [stdout] test dna_string::tests::test_suffix ... ok [INFO] [stdout] test dna_string::tests::test_kmers ... ok [INFO] [stdout] test dna_string::tests::test_push_bytes ... ok [INFO] [stdout] test bitops_avx2::test::test_convert_bytes_random ... ok [INFO] [stdout] test bitops_avx2::test::test_invalid_bases ... ok [INFO] [stdout] test kmer::tests::test_kmer_12 ... ok [INFO] [stdout] test kmer::tests::test_kmer_5 ... ok [INFO] [stdout] test kmer::tests::test_kmer_4 ... ok [INFO] [stdout] test kmer::tests::test_kmer_10 ... ok [INFO] [stdout] test kmer::tests::test_kmer_16 ... ok [INFO] [stdout] test kmer::tests::test_kmer_6 ... ok [INFO] [stdout] test kmer::tests::test_lmer_1_kmer_16 ... ok [INFO] [stdout] test kmer::tests::test_kmer_8 ... ok [INFO] [stdout] test msp::tests::test1 ... ok [INFO] [stdout] test kmer::tests::test_kmer_14 ... ok [INFO] [stdout] test msp::tests::test_sample ... ok [INFO] [stdout] test kmer::tests::test_kmer_24 ... ok [INFO] [stdout] test neighbors::test::test_hd1 ... ok [INFO] [stdout] test kmer::tests::test_lmer_1_kmer_20 ... ok [INFO] [stdout] test kmer::tests::test_kmer_31 ... ok [INFO] [stdout] test kmer::tests::test_kmer_32 ... ok [INFO] [stdout] test kmer::tests::test_lmer_1_kmer_24 ... ok [INFO] [stdout] test msp::tests::test_slice ... ok [INFO] [stdout] test test::tests::degen_seq_asm ... ok [INFO] [stdout] test test::tests::degen_seq_asm_sharded ... ok [INFO] [stdout] test test::tests::simple_kmer_compress ... ok [INFO] [stdout] test kmer::tests::test_kmer_15 ... ok [INFO] [stdout] test kmer::tests::test_kmer_20 ... ok [INFO] [stdout] test test::tests::simple_tip_clean ... ok [INFO] [stdout] test test::tests::simple_path_compress ... ok [INFO] [stdout] test test::tests::simple_sharded ... ok [INFO] [stdout] test kmer::tests::test_kmer_48 ... ok [INFO] [stdout] test kmer::tests::test_kmer_64 ... ok [INFO] [stdout] test kmer::tests::test_lmer_3_kmer_64 ... ok [INFO] [stdout] test kmer::tests::test_lmer_2_kmer_32 ... ok [INFO] [stdout] test kmer::tests::test_lmer_3_kmer_32 ... ok [INFO] [stdout] test kmer::tests::test_lmer_3_kmer_48 ... ok [INFO] [stdout] test dna_string::tests::test_slice_hamming_dist ... ok [INFO] [stdout] test test::tests::complex_path_compress ... ok [INFO] [stdout] test test::tests::complex_kmer_compress ... ok [INFO] [stdout] test test::tests::complex_sharded ... ok [INFO] [stdout] test test::tests::complex_path_compress_k31 ... ok [INFO] [stdout] test msp::tests::test_msp_scanner has been running for over 60 seconds [INFO] [stdout] test msp::tests::test_msp_scanner ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 52 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 359.98s [INFO] [stdout] [INFO] [stderr] Doc-tests debruijn [INFO] [stdout] [INFO] [stdout] running 3 tests [INFO] [stdout] test src/kmer.rs - kmer (line 10) ... ok [INFO] [stdout] test src/dna_string.rs - dna_string::DnaString (line 51) ... ok [INFO] [stdout] test src/dna_string.rs - dna_string (line 12) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.34s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "61731eb3c320c6310836e8778ebe994c3a17def77ccec7a8ada90f9511b8f529", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "61731eb3c320c6310836e8778ebe994c3a17def77ccec7a8ada90f9511b8f529", kill_on_drop: false }` [INFO] [stdout] 61731eb3c320c6310836e8778ebe994c3a17def77ccec7a8ada90f9511b8f529