[INFO] cloning repository https://github.com/wheaton5/molecule_kmers [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/wheaton5/molecule_kmers" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Fmolecule_kmers", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Fmolecule_kmers'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 9ca991c6fca82ea31e250c5aab9760cf4ac57056 [INFO] building wheaton5/molecule_kmers against master#9bd71afb90c2a6e0348cdd4a2b10a3bf39908f19 for pr-117684 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Fmolecule_kmers" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/wheaton5/molecule_kmers on toolchain 9bd71afb90c2a6e0348cdd4a2b10a3bf39908f19 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+9bd71afb90c2a6e0348cdd4a2b10a3bf39908f19" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/wheaton5/molecule_kmers [INFO] finished tweaking git repo https://github.com/wheaton5/molecule_kmers [INFO] tweaked toml for git repo https://github.com/wheaton5/molecule_kmers written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/wheaton5/molecule_kmers already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+9bd71afb90c2a6e0348cdd4a2b10a3bf39908f19" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded needletail v0.4.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0c7e0e8312ad82a1bed3696438480b7da990d348377d3754e1cd95b06a8a36c7" "/opt/rustwide/cargo-home/bin/cargo" "+9bd71afb90c2a6e0348cdd4a2b10a3bf39908f19" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 3342c05e2dda05ebcc4dc1443bb77bf42987d63144189cc92a49f29af3fb1a95 [INFO] running `Command { std: "docker" "start" "-a" "3342c05e2dda05ebcc4dc1443bb77bf42987d63144189cc92a49f29af3fb1a95", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "3342c05e2dda05ebcc4dc1443bb77bf42987d63144189cc92a49f29af3fb1a95", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3342c05e2dda05ebcc4dc1443bb77bf42987d63144189cc92a49f29af3fb1a95", kill_on_drop: false }` [INFO] [stdout] 3342c05e2dda05ebcc4dc1443bb77bf42987d63144189cc92a49f29af3fb1a95 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0c7e0e8312ad82a1bed3696438480b7da990d348377d3754e1cd95b06a8a36c7" "/opt/rustwide/cargo-home/bin/cargo" "+9bd71afb90c2a6e0348cdd4a2b10a3bf39908f19" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 313b7c7d79f06b7cc56aacfd03fd360c39815050428db2e31d76ecd54bf9f071 [INFO] running `Command { std: "docker" "start" "-a" "313b7c7d79f06b7cc56aacfd03fd360c39815050428db2e31d76ecd54bf9f071", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling libc v0.2.80 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling cc v1.0.66 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling const_fn v0.4.3 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling rayon-core v1.9.0 [INFO] [stderr] Compiling scopeguard v1.1.0 [INFO] [stderr] Compiling adler v0.2.3 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Compiling either v1.6.1 [INFO] [stderr] Compiling safemem v0.3.3 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling ansi_term v0.9.0 [INFO] [stderr] Compiling strsim v0.6.0 [INFO] [stderr] Compiling yaml-rust v0.3.5 [INFO] [stderr] Compiling textwrap v0.9.0 [INFO] [stderr] Compiling bitflags v0.9.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bytecount v0.6.2 [INFO] [stderr] Compiling scopeguard v0.3.3 [INFO] [stderr] Compiling itertools v0.9.0 [INFO] [stderr] Compiling fnv v1.0.7 [INFO] [stderr] Compiling crossbeam-utils v0.8.1 [INFO] [stderr] Compiling memoffset v0.6.1 [INFO] [stderr] Compiling miniz_oxide v0.4.3 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Compiling buf_redux v0.8.4 [INFO] [stderr] Compiling hashbrown v0.1.8 [INFO] [stderr] Compiling bzip2-sys v0.1.9+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling clap v2.27.1 [INFO] [stderr] Compiling crossbeam-epoch v0.9.1 [INFO] [stderr] Compiling crossbeam-channel v0.5.0 [INFO] [stderr] Compiling xz2 v0.1.6 [INFO] [stderr] Compiling crossbeam-deque v0.8.0 [INFO] [stderr] Compiling flate2 v1.0.19 [INFO] [stderr] Compiling bzip2 v0.3.3 [INFO] [stderr] Compiling needletail v0.4.0 [INFO] [stderr] Compiling molecule_kmers v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `HashSet` [INFO] [stdout] --> src/main.rs:22:26 [INFO] [stdout] | [INFO] [stdout] 22 | use hashbrown::{HashMap, HashSet}; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type `KMER_TYPE` should have an upper camel case name [INFO] [stdout] --> src/main.rs:60:6 [INFO] [stdout] | [INFO] [stdout] 60 | enum KMER_TYPE { [INFO] [stdout] | ^^^^^^^^^ help: convert the identifier to upper camel case: `KmerType` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_camel_case_types)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `PAIRED_HET` should have an upper camel case name [INFO] [stdout] --> src/main.rs:61:5 [INFO] [stdout] | [INFO] [stdout] 61 | PAIRED_HET, [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to upper camel case: `PairedHet` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `UNPAIRED_HET` should have an upper camel case name [INFO] [stdout] --> src/main.rs:62:5 [INFO] [stdout] | [INFO] [stdout] 62 | UNPAIRED_HET, [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to upper camel case: `UnpairedHet` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/main.rs:217:46 [INFO] [stdout] | [INFO] [stdout] 217 | fn handle_read(vars: &Vec, writer: &mut Write) { [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] help: use `dyn` [INFO] [stdout] | [INFO] [stdout] 217 | fn handle_read(vars: &Vec, writer: &mut dyn Write) { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `FastxReader` [INFO] [stdout] --> src/main.rs:13:36 [INFO] [stdout] | [INFO] [stdout] 13 | use needletail::{parse_fastx_file, FastxReader, Sequence}; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `first` [INFO] [stdout] --> src/main.rs:104:17 [INFO] [stdout] | [INFO] [stdout] 104 | let first = str::from_utf8(&buf1).unwrap(); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_first` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `current_readname` [INFO] [stdout] --> src/main.rs:149:13 [INFO] [stdout] | [INFO] [stdout] 149 | let mut current_readname = String::new(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_current_readname` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `linedex` [INFO] [stdout] --> src/main.rs:150:13 [INFO] [stdout] | [INFO] [stdout] 150 | let mut linedex = 0; [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_linedex` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:149:9 [INFO] [stdout] | [INFO] [stdout] 149 | let mut current_readname = String::new(); [INFO] [stdout] | ----^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:150:9 [INFO] [stdout] | [INFO] [stdout] 150 | let mut linedex = 0; [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `kmer_type` [INFO] [stdout] --> src/main.rs:266:47 [INFO] [stdout] | [INFO] [stdout] 266 | if let Some((kmer_id, kmer_type)) = kmer_type.get(kmer) { [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_kmer_type` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `kmer_type` [INFO] [stdout] --> src/main.rs:273:47 [INFO] [stdout] | [INFO] [stdout] 273 | if let Some((kmer_id, kmer_type)) = kmer_type.get(kmer) { [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_kmer_type` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `r1` [INFO] [stdout] --> src/main.rs:330:19 [INFO] [stdout] | [INFO] [stdout] 330 | for (filenum, r1, _, r2, _) in to_iterate.iter() { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_r1` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `r2` [INFO] [stdout] --> src/main.rs:330:26 [INFO] [stdout] | [INFO] [stdout] 330 | for (filenum, r1, _, r2, _) in to_iterate.iter() { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_r2` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `Kmers` is never constructed [INFO] [stdout] --> src/main.rs:53:8 [INFO] [stdout] | [INFO] [stdout] 53 | struct Kmers { [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `unpaired_kmers` is never read [INFO] [stdout] --> src/main.rs:431:5 [INFO] [stdout] | [INFO] [stdout] 429 | struct Params { [INFO] [stdout] | ------ field in this struct [INFO] [stdout] 430 | paired_kmers: Option, [INFO] [stdout] 431 | unpaired_kmers: Option, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Params` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `write_1_zero` is never used [INFO] [stdout] --> src/main.rs:555:4 [INFO] [stdout] | [INFO] [stdout] 555 | fn write_1_zero() { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `write_2_zeros` is never used [INFO] [stdout] --> src/main.rs:561:4 [INFO] [stdout] | [INFO] [stdout] 561 | fn write_2_zeros() { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 19 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 5.17s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] running `Command { std: "docker" "inspect" "313b7c7d79f06b7cc56aacfd03fd360c39815050428db2e31d76ecd54bf9f071", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "313b7c7d79f06b7cc56aacfd03fd360c39815050428db2e31d76ecd54bf9f071", kill_on_drop: false }` [INFO] [stdout] 313b7c7d79f06b7cc56aacfd03fd360c39815050428db2e31d76ecd54bf9f071 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0c7e0e8312ad82a1bed3696438480b7da990d348377d3754e1cd95b06a8a36c7" "/opt/rustwide/cargo-home/bin/cargo" "+9bd71afb90c2a6e0348cdd4a2b10a3bf39908f19" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 1f69e2571206e9f9ee28da18626d4cb037eb99eacbe1f2ad0517736551a7cd5f [INFO] running `Command { std: "docker" "start" "-a" "1f69e2571206e9f9ee28da18626d4cb037eb99eacbe1f2ad0517736551a7cd5f", kill_on_drop: false }` [INFO] [stderr] Compiling molecule_kmers v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `HashSet` [INFO] [stdout] --> src/main.rs:22:26 [INFO] [stdout] | [INFO] [stdout] 22 | use hashbrown::{HashMap, HashSet}; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type `KMER_TYPE` should have an upper camel case name [INFO] [stdout] --> src/main.rs:60:6 [INFO] [stdout] | [INFO] [stdout] 60 | enum KMER_TYPE { [INFO] [stdout] | ^^^^^^^^^ help: convert the identifier to upper camel case: `KmerType` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_camel_case_types)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `PAIRED_HET` should have an upper camel case name [INFO] [stdout] --> src/main.rs:61:5 [INFO] [stdout] | [INFO] [stdout] 61 | PAIRED_HET, [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to upper camel case: `PairedHet` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `UNPAIRED_HET` should have an upper camel case name [INFO] [stdout] --> src/main.rs:62:5 [INFO] [stdout] | [INFO] [stdout] 62 | UNPAIRED_HET, [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to upper camel case: `UnpairedHet` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/main.rs:217:46 [INFO] [stdout] | [INFO] [stdout] 217 | fn handle_read(vars: &Vec, writer: &mut Write) { [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] help: use `dyn` [INFO] [stdout] | [INFO] [stdout] 217 | fn handle_read(vars: &Vec, writer: &mut dyn Write) { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `FastxReader` [INFO] [stdout] --> src/main.rs:13:36 [INFO] [stdout] | [INFO] [stdout] 13 | use needletail::{parse_fastx_file, FastxReader, Sequence}; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `first` [INFO] [stdout] --> src/main.rs:104:17 [INFO] [stdout] | [INFO] [stdout] 104 | let first = str::from_utf8(&buf1).unwrap(); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_first` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `current_readname` [INFO] [stdout] --> src/main.rs:149:13 [INFO] [stdout] | [INFO] [stdout] 149 | let mut current_readname = String::new(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_current_readname` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `linedex` [INFO] [stdout] --> src/main.rs:150:13 [INFO] [stdout] | [INFO] [stdout] 150 | let mut linedex = 0; [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_linedex` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:149:9 [INFO] [stdout] | [INFO] [stdout] 149 | let mut current_readname = String::new(); [INFO] [stdout] | ----^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:150:9 [INFO] [stdout] | [INFO] [stdout] 150 | let mut linedex = 0; [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `kmer_type` [INFO] [stdout] --> src/main.rs:266:47 [INFO] [stdout] | [INFO] [stdout] 266 | if let Some((kmer_id, kmer_type)) = kmer_type.get(kmer) { [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_kmer_type` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `kmer_type` [INFO] [stdout] --> src/main.rs:273:47 [INFO] [stdout] | [INFO] [stdout] 273 | if let Some((kmer_id, kmer_type)) = kmer_type.get(kmer) { [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_kmer_type` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `r1` [INFO] [stdout] --> src/main.rs:330:19 [INFO] [stdout] | [INFO] [stdout] 330 | for (filenum, r1, _, r2, _) in to_iterate.iter() { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_r1` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `r2` [INFO] [stdout] --> src/main.rs:330:26 [INFO] [stdout] | [INFO] [stdout] 330 | for (filenum, r1, _, r2, _) in to_iterate.iter() { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_r2` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `Kmers` is never constructed [INFO] [stdout] --> src/main.rs:53:8 [INFO] [stdout] | [INFO] [stdout] 53 | struct Kmers { [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `unpaired_kmers` is never read [INFO] [stdout] --> src/main.rs:431:5 [INFO] [stdout] | [INFO] [stdout] 429 | struct Params { [INFO] [stdout] | ------ field in this struct [INFO] [stdout] 430 | paired_kmers: Option, [INFO] [stdout] 431 | unpaired_kmers: Option, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Params` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `write_1_zero` is never used [INFO] [stdout] --> src/main.rs:555:4 [INFO] [stdout] | [INFO] [stdout] 555 | fn write_1_zero() { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `write_2_zeros` is never used [INFO] [stdout] --> src/main.rs:561:4 [INFO] [stdout] | [INFO] [stdout] 561 | fn write_2_zeros() { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 19 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.32s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] running `Command { std: "docker" "inspect" "1f69e2571206e9f9ee28da18626d4cb037eb99eacbe1f2ad0517736551a7cd5f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1f69e2571206e9f9ee28da18626d4cb037eb99eacbe1f2ad0517736551a7cd5f", kill_on_drop: false }` [INFO] [stdout] 1f69e2571206e9f9ee28da18626d4cb037eb99eacbe1f2ad0517736551a7cd5f [INFO] building wheaton5/molecule_kmers against try#53e03135c36e913ff664ce8329041b7e3c2fd358 for pr-117684 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Fmolecule_kmers" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/wheaton5/molecule_kmers on toolchain 53e03135c36e913ff664ce8329041b7e3c2fd358 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+53e03135c36e913ff664ce8329041b7e3c2fd358" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/wheaton5/molecule_kmers [INFO] finished tweaking git repo https://github.com/wheaton5/molecule_kmers [INFO] tweaked toml for git repo https://github.com/wheaton5/molecule_kmers written to /workspace/builds/worker-2-tc2/source/Cargo.toml [INFO] crate git repo https://github.com/wheaton5/molecule_kmers already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+53e03135c36e913ff664ce8329041b7e3c2fd358" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0c7e0e8312ad82a1bed3696438480b7da990d348377d3754e1cd95b06a8a36c7" "/opt/rustwide/cargo-home/bin/cargo" "+53e03135c36e913ff664ce8329041b7e3c2fd358" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] af51265e06e9a8fe15cb979a0bc591995bcca56626a3087f5cf7310e0fcd5710 [INFO] running `Command { std: "docker" "start" "-a" "af51265e06e9a8fe15cb979a0bc591995bcca56626a3087f5cf7310e0fcd5710", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "af51265e06e9a8fe15cb979a0bc591995bcca56626a3087f5cf7310e0fcd5710", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "af51265e06e9a8fe15cb979a0bc591995bcca56626a3087f5cf7310e0fcd5710", kill_on_drop: false }` [INFO] [stdout] af51265e06e9a8fe15cb979a0bc591995bcca56626a3087f5cf7310e0fcd5710 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0c7e0e8312ad82a1bed3696438480b7da990d348377d3754e1cd95b06a8a36c7" "/opt/rustwide/cargo-home/bin/cargo" "+53e03135c36e913ff664ce8329041b7e3c2fd358" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] fa0973d355380b99a0c1d004e87122b0ef0bb3637ea3432ee5dc297cd1d640c0 [INFO] running `Command { std: "docker" "start" "-a" "fa0973d355380b99a0c1d004e87122b0ef0bb3637ea3432ee5dc297cd1d640c0", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling libc v0.2.80 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling cc v1.0.66 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling const_fn v0.4.3 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling rayon-core v1.9.0 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Compiling scopeguard v1.1.0 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Compiling adler v0.2.3 [INFO] [stderr] Compiling either v1.6.1 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling safemem v0.3.3 [INFO] [stderr] Compiling bitflags v0.9.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling textwrap v0.9.0 [INFO] [stderr] Compiling strsim v0.6.0 [INFO] [stderr] Compiling ansi_term v0.9.0 [INFO] [stderr] Compiling bytecount v0.6.2 [INFO] [stderr] Compiling yaml-rust v0.3.5 [INFO] [stderr] Compiling scopeguard v0.3.3 [INFO] [stderr] Compiling itertools v0.9.0 [INFO] [stderr] Compiling fnv v1.0.7 [INFO] [stderr] Compiling crossbeam-utils v0.8.1 [INFO] [stderr] Compiling memoffset v0.6.1 [INFO] [stderr] Compiling miniz_oxide v0.4.3 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Compiling buf_redux v0.8.4 [INFO] [stderr] Compiling hashbrown v0.1.8 [INFO] [stderr] Compiling bzip2-sys v0.1.9+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling clap v2.27.1 [INFO] [stderr] Compiling flate2 v1.0.19 [INFO] [stderr] Compiling crossbeam-epoch v0.9.1 [INFO] [stderr] Compiling crossbeam-channel v0.5.0 [INFO] [stderr] Compiling xz2 v0.1.6 [INFO] [stderr] Compiling crossbeam-deque v0.8.0 [INFO] [stderr] Compiling bzip2 v0.3.3 [INFO] [stderr] Compiling needletail v0.4.0 [INFO] [stderr] Compiling molecule_kmers v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `HashSet` [INFO] [stdout] --> src/main.rs:22:26 [INFO] [stdout] | [INFO] [stdout] 22 | use hashbrown::{HashMap, HashSet}; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type `KMER_TYPE` should have an upper camel case name [INFO] [stdout] --> src/main.rs:60:6 [INFO] [stdout] | [INFO] [stdout] 60 | enum KMER_TYPE { [INFO] [stdout] | ^^^^^^^^^ help: convert the identifier to upper camel case: `KmerType` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_camel_case_types)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `PAIRED_HET` should have an upper camel case name [INFO] [stdout] --> src/main.rs:61:5 [INFO] [stdout] | [INFO] [stdout] 61 | PAIRED_HET, [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to upper camel case: `PairedHet` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `UNPAIRED_HET` should have an upper camel case name [INFO] [stdout] --> src/main.rs:62:5 [INFO] [stdout] | [INFO] [stdout] 62 | UNPAIRED_HET, [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to upper camel case: `UnpairedHet` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/main.rs:217:46 [INFO] [stdout] | [INFO] [stdout] 217 | fn handle_read(vars: &Vec, writer: &mut Write) { [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] help: use `dyn` [INFO] [stdout] | [INFO] [stdout] 217 | fn handle_read(vars: &Vec, writer: &mut dyn Write) { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `FastxReader` [INFO] [stdout] --> src/main.rs:13:36 [INFO] [stdout] | [INFO] [stdout] 13 | use needletail::{parse_fastx_file, FastxReader, Sequence}; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `first` [INFO] [stdout] --> src/main.rs:104:17 [INFO] [stdout] | [INFO] [stdout] 104 | let first = str::from_utf8(&buf1).unwrap(); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_first` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `current_readname` [INFO] [stdout] --> src/main.rs:149:13 [INFO] [stdout] | [INFO] [stdout] 149 | let mut current_readname = String::new(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_current_readname` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `linedex` [INFO] [stdout] --> src/main.rs:150:13 [INFO] [stdout] | [INFO] [stdout] 150 | let mut linedex = 0; [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_linedex` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:149:9 [INFO] [stdout] | [INFO] [stdout] 149 | let mut current_readname = String::new(); [INFO] [stdout] | ----^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:150:9 [INFO] [stdout] | [INFO] [stdout] 150 | let mut linedex = 0; [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `kmer_type` [INFO] [stdout] --> src/main.rs:266:47 [INFO] [stdout] | [INFO] [stdout] 266 | if let Some((kmer_id, kmer_type)) = kmer_type.get(kmer) { [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_kmer_type` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `kmer_type` [INFO] [stdout] --> src/main.rs:273:47 [INFO] [stdout] | [INFO] [stdout] 273 | if let Some((kmer_id, kmer_type)) = kmer_type.get(kmer) { [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_kmer_type` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `r1` [INFO] [stdout] --> src/main.rs:330:19 [INFO] [stdout] | [INFO] [stdout] 330 | for (filenum, r1, _, r2, _) in to_iterate.iter() { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_r1` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `r2` [INFO] [stdout] --> src/main.rs:330:26 [INFO] [stdout] | [INFO] [stdout] 330 | for (filenum, r1, _, r2, _) in to_iterate.iter() { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_r2` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `Kmers` is never constructed [INFO] [stdout] --> src/main.rs:53:8 [INFO] [stdout] | [INFO] [stdout] 53 | struct Kmers { [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `unpaired_kmers` is never read [INFO] [stdout] --> src/main.rs:431:5 [INFO] [stdout] | [INFO] [stdout] 429 | struct Params { [INFO] [stdout] | ------ field in this struct [INFO] [stdout] 430 | paired_kmers: Option, [INFO] [stdout] 431 | unpaired_kmers: Option, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Params` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `write_1_zero` is never used [INFO] [stdout] --> src/main.rs:555:4 [INFO] [stdout] | [INFO] [stdout] 555 | fn write_1_zero() { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `write_2_zeros` is never used [INFO] [stdout] --> src/main.rs:561:4 [INFO] [stdout] | [INFO] [stdout] 561 | fn write_2_zeros() { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: LC_ALL="C" PATH="/opt/rustwide/rustup-home/toolchains/53e03135c36e913ff664ce8329041b7e3c2fd358/lib/rustlib/x86_64-unknown-linux-gnu/bin:/opt/rustwide/rustup-home/toolchains/53e03135c36e913ff664ce8329041b7e3c2fd358/lib/rustlib/x86_64-unknown-linux-gnu/bin/self-contained:/opt/rustwide/cargo-home/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin" VSLANG="1033" "cc" "-m64" "/tmp/rustcZ1PU7N/symbols.o" "/opt/rustwide/target/debug/deps/molecule_kmers-01cf4e0afe3efd3d.molecule_kmers.1ece76092fcac192-cgu.0.rcgu.o" "/opt/rustwide/target/debug/deps/molecule_kmers-01cf4e0afe3efd3d.molecule_kmers.1ece76092fcac192-cgu.1.rcgu.o" "/opt/rustwide/target/debug/deps/molecule_kmers-01cf4e0afe3efd3d.molecule_kmers.1ece76092fcac192-cgu.2.rcgu.o" "/opt/rustwide/target/debug/deps/molecule_kmers-01cf4e0afe3efd3d.molecule_kmers.1ece76092fcac192-cgu.3.rcgu.o" "/opt/rustwide/target/debug/deps/molecule_kmers-01cf4e0afe3efd3d.molecule_kmers.1ece76092fcac192-cgu.4.rcgu.o" 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"/opt/rustwide/target/debug/deps/libnum_cpus-c8944a96b312216e.rlib" "/opt/rustwide/target/debug/deps/libcrossbeam_deque-32537cba2d39afde.rlib" "/opt/rustwide/target/debug/deps/libcrossbeam_epoch-b1df37d23fc27e76.rlib" "/opt/rustwide/target/debug/deps/libmemoffset-ce3398bc5d8e3274.rlib" "/opt/rustwide/target/debug/deps/libscopeguard-6ebe5b14c8a6c2d8.rlib" "/opt/rustwide/target/debug/deps/libcrossbeam_channel-95db9598ce751ef4.rlib" "/opt/rustwide/target/debug/deps/libcrossbeam_utils-90a1859dd99392c2.rlib" "/opt/rustwide/target/debug/deps/liblazy_static-b82c15677deef9e2.rlib" "/opt/rustwide/target/debug/deps/libneedletail-dbccfb1e0416b930.rlib" "/opt/rustwide/target/debug/deps/libbytecount-459d00873a6c499e.rlib" "/opt/rustwide/target/debug/deps/libbuf_redux-7f480582c4d94f93.rlib" "/opt/rustwide/target/debug/deps/libsafemem-67d54dc2a787db43.rlib" "/opt/rustwide/target/debug/deps/libmemchr-a128a7de1a84f010.rlib" "/opt/rustwide/target/debug/deps/libxz2-aa1d691da136cb8a.rlib" "/opt/rustwide/target/debug/deps/liblzma_sys-4e820583efa73f63.rlib" "/opt/rustwide/target/debug/deps/libbzip2-84c2613ec17a1b09.rlib" "/opt/rustwide/target/debug/deps/libbzip2_sys-d0d15aac9f5d60c5.rlib" "/opt/rustwide/target/debug/deps/libitertools-71f62649e94fbf3c.rlib" "/opt/rustwide/target/debug/deps/libeither-e779026d249f34d5.rlib" "/opt/rustwide/target/debug/deps/libhashbrown-67a4a81c10261f00.rlib" "/opt/rustwide/target/debug/deps/libscopeguard-11280264ea39e0df.rlib" "/opt/rustwide/target/debug/deps/libfnv-574dedeaa4c89e1d.rlib" "/opt/rustwide/target/debug/deps/libflate2-761152503d969731.rlib" "/opt/rustwide/target/debug/deps/libminiz_oxide-8f1265b4a6e4d2c1.rlib" "/opt/rustwide/target/debug/deps/libadler-084b3f7f93a0c818.rlib" "/opt/rustwide/target/debug/deps/libcrc32fast-0f13e5f5013c6eb1.rlib" "/opt/rustwide/target/debug/deps/libcfg_if-0128a598f57c42f0.rlib" "/opt/rustwide/target/debug/deps/libbyteorder-c69c557766a6b69d.rlib" "/opt/rustwide/target/debug/deps/libclap-61a197092e563ebb.rlib" "/opt/rustwide/target/debug/deps/libatty-cfccd8132ce3328c.rlib" "/opt/rustwide/target/debug/deps/liblibc-5b23d432ee856a7e.rlib" "/opt/rustwide/target/debug/deps/libtextwrap-73aabdcade0e5328.rlib" "/opt/rustwide/target/debug/deps/libvec_map-fc342719877893b6.rlib" "/opt/rustwide/target/debug/deps/libbitflags-8a948b7e36f6810d.rlib" "/opt/rustwide/target/debug/deps/libunicode_width-997a05f5201c0054.rlib" "/opt/rustwide/target/debug/deps/libyaml_rust-13c3870532b7a932.rlib" "/opt/rustwide/target/debug/deps/libansi_term-8d8972a27ef49df2.rlib" "/opt/rustwide/target/debug/deps/libstrsim-3978d28cee3c44ec.rlib" "/opt/rustwide/rustup-home/toolchains/53e03135c36e913ff664ce8329041b7e3c2fd358/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-72b35984a787fb54.rlib" "/opt/rustwide/rustup-home/toolchains/53e03135c36e913ff664ce8329041b7e3c2fd358/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-0fdedff926cd8b5a.rlib" "/opt/rustwide/rustup-home/toolchains/53e03135c36e913ff664ce8329041b7e3c2fd358/lib/rustlib/x86_64-unknown-linux-gnu/lib/libobject-fe0525e327a5464a.rlib" "/opt/rustwide/rustup-home/toolchains/53e03135c36e913ff664ce8329041b7e3c2fd358/lib/rustlib/x86_64-unknown-linux-gnu/lib/libmemchr-795b2243f06bd098.rlib" "/opt/rustwide/rustup-home/toolchains/53e03135c36e913ff664ce8329041b7e3c2fd358/lib/rustlib/x86_64-unknown-linux-gnu/lib/libaddr2line-86ce554ff6ad08cd.rlib" "/opt/rustwide/rustup-home/toolchains/53e03135c36e913ff664ce8329041b7e3c2fd358/lib/rustlib/x86_64-unknown-linux-gnu/lib/libgimli-1be635a4727d8e5e.rlib" "/opt/rustwide/rustup-home/toolchains/53e03135c36e913ff664ce8329041b7e3c2fd358/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-1e55d89766af9c5f.rlib" "/opt/rustwide/rustup-home/toolchains/53e03135c36e913ff664ce8329041b7e3c2fd358/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd_detect-02605c7065574d0d.rlib" "/opt/rustwide/rustup-home/toolchains/53e03135c36e913ff664ce8329041b7e3c2fd358/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-0d17ba1067febc2c.rlib" "/opt/rustwide/rustup-home/toolchains/53e03135c36e913ff664ce8329041b7e3c2fd358/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-2408fbe38b247900.rlib" "/opt/rustwide/rustup-home/toolchains/53e03135c36e913ff664ce8329041b7e3c2fd358/lib/rustlib/x86_64-unknown-linux-gnu/lib/libminiz_oxide-b3c63e8997fdca47.rlib" "/opt/rustwide/rustup-home/toolchains/53e03135c36e913ff664ce8329041b7e3c2fd358/lib/rustlib/x86_64-unknown-linux-gnu/lib/libadler-bfa7a39ebb77d49a.rlib" "/opt/rustwide/rustup-home/toolchains/53e03135c36e913ff664ce8329041b7e3c2fd358/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-4b955078cf51c0a1.rlib" "/opt/rustwide/rustup-home/toolchains/53e03135c36e913ff664ce8329041b7e3c2fd358/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-1a6fbee0083900be.rlib" "/opt/rustwide/rustup-home/toolchains/53e03135c36e913ff664ce8329041b7e3c2fd358/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-2b93db426c5a26c2.rlib" "/opt/rustwide/rustup-home/toolchains/53e03135c36e913ff664ce8329041b7e3c2fd358/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-b30975e2b876cf32.rlib" "/opt/rustwide/rustup-home/toolchains/53e03135c36e913ff664ce8329041b7e3c2fd358/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-cd2f2bc505f56f50.rlib" "/opt/rustwide/rustup-home/toolchains/53e03135c36e913ff664ce8329041b7e3c2fd358/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-ec02dd343723da85.rlib" "/opt/rustwide/rustup-home/toolchains/53e03135c36e913ff664ce8329041b7e3c2fd358/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-408115ade0360d2a.rlib" "-Wl,-Bdynamic" "-llzma" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-B/opt/rustwide/rustup-home/toolchains/53e03135c36e913ff664ce8329041b7e3c2fd358/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/rustup-home/toolchains/53e03135c36e913ff664ce8329041b7e3c2fd358/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-L" "/opt/rustwide/rustup-home/toolchains/53e03135c36e913ff664ce8329041b7e3c2fd358/lib/rustlib/x86_64-unknown-linux-gnu/lib/self-contained" "-o" "/opt/rustwide/target/debug/deps/molecule_kmers-01cf4e0afe3efd3d" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 7 [Bus error], core dumped [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to previous error; 19 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `molecule_kmers` (bin "molecule_kmers") due to 2 previous errors; 19 warnings emitted [INFO] running `Command { std: "docker" "inspect" "fa0973d355380b99a0c1d004e87122b0ef0bb3637ea3432ee5dc297cd1d640c0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fa0973d355380b99a0c1d004e87122b0ef0bb3637ea3432ee5dc297cd1d640c0", kill_on_drop: false }` [INFO] [stdout] fa0973d355380b99a0c1d004e87122b0ef0bb3637ea3432ee5dc297cd1d640c0