[INFO] cloning repository https://github.com/SciLifeLab/umi-transfer
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/SciLifeLab/umi-transfer" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSciLifeLab%2Fumi-transfer", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSciLifeLab%2Fumi-transfer'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 7f9f73c9fbb7456536d5ff8dd24097ee17e7619a
[INFO] building SciLifeLab/umi-transfer against master#9bd71afb90c2a6e0348cdd4a2b10a3bf39908f19 for pr-117684
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSciLifeLab%2Fumi-transfer" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/SciLifeLab/umi-transfer on toolchain 9bd71afb90c2a6e0348cdd4a2b10a3bf39908f19
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+9bd71afb90c2a6e0348cdd4a2b10a3bf39908f19" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/SciLifeLab/umi-transfer
[INFO] finished tweaking git repo https://github.com/SciLifeLab/umi-transfer
[INFO] tweaked toml for git repo https://github.com/SciLifeLab/umi-transfer written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/SciLifeLab/umi-transfer already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+9bd71afb90c2a6e0348cdd4a2b10a3bf39908f19" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded bio-types v1.0.0
[INFO] [stderr]   Downloaded bio v0.41.0
[INFO] [stderr]   Downloaded file-format v0.7.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0c7e0e8312ad82a1bed3696438480b7da990d348377d3754e1cd95b06a8a36c7" "/opt/rustwide/cargo-home/bin/cargo" "+9bd71afb90c2a6e0348cdd4a2b10a3bf39908f19" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 5a557f90ea987eba79847452f72fb64f257c6601a6b5a337f2f98018c70a0aa5
[INFO] running `Command { std: "docker" "start" "-a" "5a557f90ea987eba79847452f72fb64f257c6601a6b5a337f2f98018c70a0aa5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "5a557f90ea987eba79847452f72fb64f257c6601a6b5a337f2f98018c70a0aa5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5a557f90ea987eba79847452f72fb64f257c6601a6b5a337f2f98018c70a0aa5", kill_on_drop: false }`
[INFO] [stdout] 5a557f90ea987eba79847452f72fb64f257c6601a6b5a337f2f98018c70a0aa5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0c7e0e8312ad82a1bed3696438480b7da990d348377d3754e1cd95b06a8a36c7" "/opt/rustwide/cargo-home/bin/cargo" "+9bd71afb90c2a6e0348cdd4a2b10a3bf39908f19" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4b04c05faec5c5acf4f88ad2c6df5374ea9d62fdc5c4063daf13f588e5ea25b9
[INFO] running `Command { std: "docker" "start" "-a" "4b04c05faec5c5acf4f88ad2c6df5374ea9d62fdc5c4063daf13f588e5ea25b9", kill_on_drop: false }`
[INFO] [stderr]    Compiling libm v0.2.7
[INFO] [stderr]    Compiling num-traits v0.2.16
[INFO] [stderr]    Compiling rustix v0.38.4
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]    Compiling linux-raw-sys v0.4.5
[INFO] [stderr]    Compiling bitflags v2.3.3
[INFO] [stderr]    Compiling serde v1.0.180
[INFO] [stderr]    Compiling matrixmultiply v0.3.7
[INFO] [stderr]    Compiling ppv-lite86 v0.2.17
[INFO] [stderr]    Compiling paste v1.0.14
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling serde_derive v1.0.180
[INFO] [stderr]    Compiling rustversion v1.0.14
[INFO] [stderr]    Compiling quote v1.0.32
[INFO] [stderr]    Compiling getrandom v0.2.10
[INFO] [stderr]    Compiling num-rational v0.4.1
[INFO] [stderr]    Compiling heck v0.4.1
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling syn v2.0.28
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling typenum v1.16.0
[INFO] [stderr]    Compiling aho-corasick v1.0.2
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling regex-syntax v0.7.4
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling thiserror v1.0.44
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling utf8parse v0.2.1
[INFO] [stderr]    Compiling anstyle-parse v0.2.1
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling unicode-width v0.1.10
[INFO] [stderr]    Compiling portable-atomic v1.4.2
[INFO] [stderr]    Compiling unicode-segmentation v1.10.1
[INFO] [stderr]    Compiling anyhow v1.0.72
[INFO] [stderr]    Compiling anstyle-query v1.0.0
[INFO] [stderr]    Compiling colorchoice v1.0.0
[INFO] [stderr]    Compiling anstyle v1.0.1
[INFO] [stderr]    Compiling crc32fast v1.3.2
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]    Compiling console v0.15.7
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling adler v1.0.2
[INFO] [stderr]    Compiling fixedbitset v0.4.2
[INFO] [stderr]    Compiling either v1.9.0
[INFO] [stderr]    Compiling is_ci v1.1.1
[INFO] [stderr]    Compiling fastrand v2.0.0
[INFO] [stderr]    Compiling byteorder v1.4.3
[INFO] [stderr]    Compiling strsim v0.10.0
[INFO] [stderr]    Compiling num-complex v0.4.3
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling clap_lex v0.5.0
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling itertools v0.10.5
[INFO] [stderr]    Compiling ordered-float v1.1.1
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling bit-set v0.5.3
[INFO] [stderr]    Compiling supports-color v1.3.1
[INFO] [stderr]    Compiling simba v0.5.1
[INFO] [stderr]    Compiling ndarray v0.15.6
[INFO] [stderr]    Compiling petgraph v0.6.3
[INFO] [stderr]    Compiling miniz_oxide v0.7.1
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling bytecount v0.6.3
[INFO] [stderr]    Compiling zeroize v1.6.0
[INFO] [stderr]    Compiling regex-automata v0.3.4
[INFO] [stderr]    Compiling shell-words v1.1.0
[INFO] [stderr]    Compiling is-terminal v0.4.9
[INFO] [stderr]    Compiling anstream v0.3.2
[INFO] [stderr]    Compiling tempfile v3.7.0
[INFO] [stderr]    Compiling strum v0.23.0
[INFO] [stderr]    Compiling clap_builder v4.3.19
[INFO] [stderr]    Compiling number_prefix v0.4.0
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling indicatif v0.17.5
[INFO] [stderr]    Compiling dialoguer v0.10.4
[INFO] [stderr]    Compiling flate2 v1.0.26
[INFO] [stderr]    Compiling owo-colors v3.5.0
[INFO] [stderr]    Compiling file-format v0.7.0
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling multimap v0.8.3
[INFO] [stderr]    Compiling csv v1.2.2
[INFO] [stderr]    Compiling thiserror-impl v1.0.44
[INFO] [stderr]    Compiling clap_derive v4.3.12
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.24.3
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.23.1
[INFO] [stderr]    Compiling getset v0.1.2
[INFO] [stderr]    Compiling regex v1.9.1
[INFO] [stderr]    Compiling enum-map v1.1.1
[INFO] [stderr]    Compiling clap v4.3.19
[INFO] [stderr]    Compiling bio-types v1.0.0
[INFO] [stderr]    Compiling nalgebra v0.27.1
[INFO] [stderr]    Compiling statrs v0.15.0
[INFO] [stderr]    Compiling bio v0.41.0
[INFO] [stderr]    Compiling umi-transfer v1.0.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 28.32s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "4b04c05faec5c5acf4f88ad2c6df5374ea9d62fdc5c4063daf13f588e5ea25b9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4b04c05faec5c5acf4f88ad2c6df5374ea9d62fdc5c4063daf13f588e5ea25b9", kill_on_drop: false }`
[INFO] [stdout] 4b04c05faec5c5acf4f88ad2c6df5374ea9d62fdc5c4063daf13f588e5ea25b9
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0c7e0e8312ad82a1bed3696438480b7da990d348377d3754e1cd95b06a8a36c7" "/opt/rustwide/cargo-home/bin/cargo" "+9bd71afb90c2a6e0348cdd4a2b10a3bf39908f19" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 73931f71d5837712f88a8ea5f77849a11a9b6cd9c165dd01a07e3f5062abb7e4
[INFO] running `Command { std: "docker" "start" "-a" "73931f71d5837712f88a8ea5f77849a11a9b6cd9c165dd01a07e3f5062abb7e4", kill_on_drop: false }`
[INFO] [stderr]    Compiling regex-automata v0.3.4
[INFO] [stderr]    Compiling same-file v1.0.6
[INFO] [stderr]    Compiling log v0.4.19
[INFO] [stderr]    Compiling predicates-core v1.0.6
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling float-cmp v0.9.0
[INFO] [stderr]    Compiling thread_local v1.1.7
[INFO] [stderr]    Compiling normalize-line-endings v0.3.0
[INFO] [stderr]    Compiling termtree v0.4.1
[INFO] [stderr]    Compiling difflib v0.4.0
[INFO] [stderr]    Compiling wait-timeout v0.2.0
[INFO] [stderr]    Compiling walkdir v2.3.3
[INFO] [stderr]    Compiling predicates-tree v1.0.9
[INFO] [stderr]    Compiling regex v1.9.1
[INFO] [stderr]    Compiling bstr v1.6.0
[INFO] [stderr]    Compiling predicates v3.0.3
[INFO] [stderr]    Compiling bio-types v1.0.0
[INFO] [stderr]    Compiling globset v0.4.12
[INFO] [stderr]    Compiling bio v0.41.0
[INFO] [stderr]    Compiling assert_cmd v2.0.12
[INFO] [stderr]    Compiling ignore v0.4.20
[INFO] [stderr]    Compiling globwalk v0.8.1
[INFO] [stderr]    Compiling assert_fs v1.0.13
[INFO] [stderr]    Compiling umi-transfer v1.0.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 7.16s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "73931f71d5837712f88a8ea5f77849a11a9b6cd9c165dd01a07e3f5062abb7e4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "73931f71d5837712f88a8ea5f77849a11a9b6cd9c165dd01a07e3f5062abb7e4", kill_on_drop: false }`
[INFO] [stdout] 73931f71d5837712f88a8ea5f77849a11a9b6cd9c165dd01a07e3f5062abb7e4