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[INFO] [stderr] Downloaded ieee754 v0.2.2 [INFO] [stderr] Downloaded predicates v0.5.2 [INFO] [stderr] Downloaded escargot v0.2.0 [INFO] [stderr] Downloaded itertools v0.6.0 [INFO] [stderr] Downloaded flate2 v0.2.18 [INFO] [stderr] Downloaded cbindgen v0.13.2 [INFO] [stderr] Downloaded rust-htslib v0.12.1 [INFO] [stderr] Downloaded bincode v0.5.9 [INFO] [stderr] Downloaded assert_cmd v0.4.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0c7e0e8312ad82a1bed3696438480b7da990d348377d3754e1cd95b06a8a36c7" "/opt/rustwide/cargo-home/bin/cargo" "+a42d94ebb883116f2867cbe3016d9bde9ca6d3f7" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] bcf6bb5bfcd952c54e6c2750305ea9521f956f93eb844ef86b876b0aec096264 [INFO] running `Command { std: "docker" "start" "-a" "bcf6bb5bfcd952c54e6c2750305ea9521f956f93eb844ef86b876b0aec096264", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "bcf6bb5bfcd952c54e6c2750305ea9521f956f93eb844ef86b876b0aec096264", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bcf6bb5bfcd952c54e6c2750305ea9521f956f93eb844ef86b876b0aec096264", kill_on_drop: false }` [INFO] [stdout] bcf6bb5bfcd952c54e6c2750305ea9521f956f93eb844ef86b876b0aec096264 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0c7e0e8312ad82a1bed3696438480b7da990d348377d3754e1cd95b06a8a36c7" "/opt/rustwide/cargo-home/bin/cargo" "+a42d94ebb883116f2867cbe3016d9bde9ca6d3f7" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 02855f11d0b4cce6ebed847b2daa71c009af09fdd90da01f34901fbf441520a3 [INFO] running `Command { std: "docker" "start" "-a" "02855f11d0b4cce6ebed847b2daa71c009af09fdd90da01f34901fbf441520a3", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.26 [INFO] [stderr] Compiling libc v0.2.92 [INFO] [stderr] Compiling syn v1.0.68 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling ident_case v1.0.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling serde_derive v1.0.125 [INFO] [stderr] Compiling strsim v0.10.0 [INFO] [stderr] Compiling fnv v1.0.7 [INFO] [stderr] Compiling winapi-build v0.1.1 [INFO] [stderr] Compiling serde v1.0.125 [INFO] [stderr] Compiling version_check v0.1.5 [INFO] [stderr] Checking winapi v0.2.8 [INFO] [stderr] Compiling gcc v0.3.45 [INFO] [stderr] Checking matches v0.1.6 [INFO] [stderr] Compiling num-traits v0.2.6 [INFO] [stderr] Compiling ryu v0.2.7 [INFO] [stderr] Checking cfg-if v0.1.6 [INFO] [stderr] Checking unicode-bidi v0.3.4 [INFO] [stderr] Checking unicode-normalization v0.1.5 [INFO] [stderr] Checking rustc-serialize v0.3.23 [INFO] [stderr] Compiling rust-htslib v0.12.1 [INFO] [stderr] Compiling kernel32-sys v0.2.2 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling memchr v2.1.1 [INFO] [stderr] Checking lazy_static v1.2.0 [INFO] [stderr] Checking percent-encoding v1.0.0 [INFO] [stderr] Checking ucd-util v0.1.3 [INFO] [stderr] Checking lazy_static v0.2.6 [INFO] [stderr] Checking utf8-ranges v0.1.3 [INFO] [stderr] Compiling regex v1.0.6 [INFO] [stderr] Checking regex-syntax v0.3.9 [INFO] [stderr] Checking either v1.1.0 [INFO] [stderr] Checking idna v0.1.2 [INFO] [stderr] Checking thread_local v0.3.6 [INFO] [stderr] Checking serde v0.7.15 [INFO] [stderr] Checking regex-syntax v0.6.3 [INFO] [stderr] Checking itoa v0.4.3 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking itertools v0.6.0 [INFO] [stderr] Compiling seqOutBias v1.4.0 (/opt/rustwide/workdir) [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking quick-error v1.2.0 [INFO] [stderr] Checking num-traits v0.1.37 [INFO] [stderr] Compiling escargot v0.2.0 [INFO] [stderr] Compiling miniz-sys v0.1.9 [INFO] [stderr] Checking utf8-ranges v1.0.2 [INFO] [stderr] Checking byteorder v0.5.3 [INFO] [stderr] Checking bitflags v0.9.1 [INFO] [stderr] Checking strsim v0.5.2 [INFO] [stderr] Checking ieee754 v0.2.2 [INFO] [stderr] Checking difference v2.0.0 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Checking remove_dir_all v0.5.1 [INFO] [stderr] Checking fs_extra v1.1.0 [INFO] [stderr] Checking thread-id v2.0.0 [INFO] [stderr] Checking memchr v0.1.11 [INFO] [stderr] Checking rand v0.4.3 [INFO] [stderr] Checking float-cmp v0.4.0 [INFO] [stderr] Checking thread_local v0.2.7 [INFO] [stderr] Checking url v1.7.2 [INFO] [stderr] Checking aho-corasick v0.5.3 [INFO] [stderr] Checking aho-corasick v0.6.9 [INFO] [stderr] Checking regex v0.1.80 [INFO] [stderr] Checking flate2 v0.2.18 [INFO] [stderr] Checking rand v0.3.22 [INFO] [stderr] Checking tempdir v0.3.7 [INFO] [stderr] Checking tempfile v2.2.0 [INFO] [stderr] Checking bincode v0.5.9 [INFO] [stderr] Checking docopt v0.6.86 [INFO] [stderr] Checking predicates v0.5.2 [INFO] [stderr] Checking darling_core v0.12.2 [INFO] [stderr] Compiling darling_macro v0.12.2 [INFO] [stderr] Compiling darling v0.12.2 [INFO] [stderr] Checking profile v1.0.0 (/opt/rustwide/workdir/profile) [INFO] [stderr] Checking toml v0.5.8 [INFO] [stderr] Checking serde_json v1.0.33 [INFO] [stderr] Checking assert_cmd v0.4.0 [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/tallyread.rs:75:9 [INFO] [stdout] | [INFO] [stdout] 75 | try!(result.read_sequence_data()); [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/tallyread.rs:103:40 [INFO] [stdout] | [INFO] [stdout] 103 | let (seq, pos, is_minus) = try!(parse_line(&self.line)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/tallyread.rs:138:9 [INFO] [stdout] | [INFO] [stdout] 138 | try!(self.read_sequence_data()); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/seqtable/write.rs:18:17 [INFO] [stdout] | [INFO] [stdout] 18 | #[derive(Debug, RustcEncodable, RustcDecodable, PartialEq)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/seqtable/write.rs:18:33 [INFO] [stdout] | [INFO] [stdout] 18 | #[derive(Debug, RustcEncodable, RustcDecodable, PartialEq)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/seqtable/write.rs:25:17 [INFO] [stdout] | [INFO] [stdout] 25 | #[derive(Debug, RustcEncodable, RustcDecodable, PartialEq)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/seqtable/write.rs:25:33 [INFO] [stdout] | [INFO] [stdout] 25 | #[derive(Debug, RustcEncodable, RustcDecodable, PartialEq)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/write.rs:47:9 [INFO] [stdout] | [INFO] [stdout] 47 | try!(writer.write_u8(super::TBL_VERSION)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/write.rs:49:9 [INFO] [stdout] | [INFO] [stdout] 49 | try!(writer.write_u8(params.kmer_length)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/write.rs:50:9 [INFO] [stdout] | [INFO] [stdout] 50 | try!(writer.write_u8(params.unmasked_count)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/write.rs:52:9 [INFO] [stdout] | [INFO] [stdout] 52 | try!(writer.write_u8(params.plus_offset)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/write.rs:53:9 [INFO] [stdout] | [INFO] [stdout] 53 | try!(writer.write_u8(params.minus_offset)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/write.rs:54:9 [INFO] [stdout] | [INFO] [stdout] 54 | try!(writer.write_u16::(params.read_length)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/write.rs:55:9 [INFO] [stdout] | [INFO] [stdout] 55 | try!(writer.write_u8( if params.strand_specific { 1u8 } else { 0u8 })); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/write.rs:68:9 [INFO] [stdout] | [INFO] [stdout] 68 | try!(writer.write_u32::(blen)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/write.rs:71:9 [INFO] [stdout] | [INFO] [stdout] 71 | try!(writer.write_u64::(0)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/write.rs:73:9 [INFO] [stdout] | [INFO] [stdout] 73 | try!(writer.write_u64::(0)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/write.rs:75:9 [INFO] [stdout] | [INFO] [stdout] 75 | try!(writer.write_u64::(0)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/write.rs:60:21 [INFO] [stdout] | [INFO] [stdout] 60 | try!(writer.write_u8(1)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/write.rs:62:21 [INFO] [stdout] | [INFO] [stdout] 62 | try!(writer.write_u8(0)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/write.rs:169:9 [INFO] [stdout] | [INFO] [stdout] 169 | try!(self.writer.write(&self.output[0..(total as usize)])); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:37:9 [INFO] [stdout] | [INFO] [stdout] 37 | try!(reader.seek(SeekFrom::Start(0))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:84:9 [INFO] [stdout] | [INFO] [stdout] 84 | try!(reader.seek(SeekFrom::Start(offset))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:39:23 [INFO] [stdout] | [INFO] [stdout] 39 | let version = try!(reader.read_u8()); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:44:18 [INFO] [stdout] | [INFO] [stdout] 44 | let cl = try!(reader.read_u8()); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:45:18 [INFO] [stdout] | [INFO] [stdout] 45 | let uc = try!(reader.read_u8()); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:46:18 [INFO] [stdout] | [INFO] [stdout] 46 | let po = try!(reader.read_u8()); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:47:18 [INFO] [stdout] | [INFO] [stdout] 47 | let mo = try!(reader.read_u8()); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:48:18 [INFO] [stdout] | [INFO] [stdout] 48 | let rl = try!(reader.read_u16::()); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:49:18 [INFO] [stdout] | [INFO] [stdout] 49 | let ss = try!(reader.read_u8()) == 1; [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:54:28 [INFO] [stdout] | [INFO] [stdout] 54 | let flag = try!(reader.read_u8()); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:73:20 [INFO] [stdout] | [INFO] [stdout] 73 | let blen = try!(reader.read_u32::()); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:75:22 [INFO] [stdout] | [INFO] [stdout] 75 | let offset = try!(reader.read_u64::()); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:77:23 [INFO] [stdout] | [INFO] [stdout] 77 | let bufsize = try!(reader.read_u64::()) as usize; [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:79:29 [INFO] [stdout] | [INFO] [stdout] 79 | let counts_offset = try!(reader.read_u64::()); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:104:25 [INFO] [stdout] | [INFO] [stdout] 104 | try!(self.reader.seek(SeekFrom::Start(block.offset))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:129:21 [INFO] [stdout] | [INFO] [stdout] 129 | try!(self.reader.seek(SeekFrom::Start(block.offset))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:163:9 [INFO] [stdout] | [INFO] [stdout] 163 | try!(self.reader.seek(SeekFrom::Start(self.counts_offset))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:200:9 [INFO] [stdout] | [INFO] [stdout] 200 | try!(self.reader.seek(SeekFrom::Start(block_info.offset))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:201:9 [INFO] [stdout] | [INFO] [stdout] 201 | try!(self.reader.read(buf)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:228:31 [INFO] [stdout] | [INFO] [stdout] 228 | let aux = try!(self.read_block(block_info)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::collections::VecDeque` [INFO] [stdout] --> src/fasta.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use std::collections::VecDeque; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around assigned value [INFO] [stdout] --> src/fasta/context/simple.rs:39:43 [INFO] [stdout] | [INFO] [stdout] 39 | self.rev_dna_value -= ( 3 - head as u64); [INFO] [stdout] | ^^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 39 - self.rev_dna_value -= ( 3 - head as u64); [INFO] [stdout] 39 + self.rev_dna_value -= 3 - head as u64; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/counts.rs:100:16 [INFO] [stdout] | [INFO] [stdout] 100 | let file = try!(File::open(filename)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/counts.rs:111:18 [INFO] [stdout] | [INFO] [stdout] 111 | let line = try!(res); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bigwig.rs:22:17 [INFO] [stdout] | [INFO] [stdout] 22 | let mut f = try!(File::create(filename)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bigwig.rs:25:9 [INFO] [stdout] | [INFO] [stdout] 25 | try!(write!(f, "{}\t{}\n", chroms[index], chrom_sizes[index])); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bigwig.rs:33:17 [INFO] [stdout] | [INFO] [stdout] 33 | let mut f = try!(File::create(filename)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bigwig.rs:39:9 [INFO] [stdout] | [INFO] [stdout] 39 | try!(write!(f, "variableStep chrom={}\n", chrom)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bigwig.rs:45:53 [INFO] [stdout] | [INFO] [stdout] 45 | Strand::Plus => if value.0 > 0f64 { try!(write!(f, "{}\t{}\n", pos, value.0)) }, [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bigwig.rs:46:54 [INFO] [stdout] | [INFO] [stdout] 46 | Strand::Minus => if value.1 > 0f64 { try!(write!(f, "{}\t{}\n", pos, -value.1)) }, [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bigwig.rs:47:33 [INFO] [stdout] | [INFO] [stdout] 47 | Strand::Both => try!(write!(f, "{}\t{}\n", pos, value.0 + value.1)), [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bigwig.rs:78:9 [INFO] [stdout] | [INFO] [stdout] 78 | try!(write_chrom_info(chrominfo_name, chroms, chrom_sizes)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bigwig.rs:83:9 [INFO] [stdout] | [INFO] [stdout] 83 | try!(write_wiggle(wiggle_name, chroms, counts, strand)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/scale.rs:115:21 [INFO] [stdout] | [INFO] [stdout] 115 | let mut f = try!(File::create(filename.filename())); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/scale.rs:125:25 [INFO] [stdout] | [INFO] [stdout] 125 | try!(write!(f, "{}\t{}\t{}\t.\t{}\t+\n", chrom, pos, pos + 1, value.0)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/scale.rs:129:29 [INFO] [stdout] | [INFO] [stdout] 129 | ... try!(write!(f, "{}\t{}\t{}\t.\t{}\t-\n", chrom, pos, pos + 1, value.1)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/scale.rs:131:29 [INFO] [stdout] | [INFO] [stdout] 131 | ... try!(write!(f, "{}\t{}\t{}\t.\t{}\t-\n", chrom, pos, pos + 1, -value.1)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/scale.rs:135:21 [INFO] [stdout] | [INFO] [stdout] 135 | try!(write!(f, "{}\t{}\t{}\t.\t{}\n", chrom, pos, pos + 1, value.0 + value.1)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/scale.rs:167:21 [INFO] [stdout] | [INFO] [stdout] 167 | try!(write_bigwig(&output_minus.filename(), &self.chroms, &self.chrom_sizes, &self.counts, Strand::Minus)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/scale.rs:173:13 [INFO] [stdout] | [INFO] [stdout] 173 | try!(write_bigwig(&filename.filename(), &self.chroms, &self.chrom_sizes, &self.counts, Strand::Both)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/seqtable/mod.rs:74:86 [INFO] [stdout] | [INFO] [stdout] 74 | println!("Error: Failed to open sequence table file '{}': {}", filename, err.description()); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/seqtable/dump.rs:53:90 [INFO] [stdout] | [INFO] [stdout] 53 | println!("Error: failed to open sequence table file '{}': {}", filename, err.description()); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/seqtable/dump.rs:95:90 [INFO] [stdout] | [INFO] [stdout] 95 | println!("Error: failed to open sequence table file '{}': {}", filename, err.description()); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/tallyread.rs:75:9 [INFO] [stdout] | [INFO] [stdout] 75 | try!(result.read_sequence_data()); [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/tallyread.rs:103:40 [INFO] [stdout] | [INFO] [stdout] 103 | let (seq, pos, is_minus) = try!(parse_line(&self.line)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/tallyread.rs:138:9 [INFO] [stdout] | [INFO] [stdout] 138 | try!(self.read_sequence_data()); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/seqtable/write.rs:18:17 [INFO] [stdout] | [INFO] [stdout] 18 | #[derive(Debug, RustcEncodable, RustcDecodable, PartialEq)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/seqtable/write.rs:18:33 [INFO] [stdout] | [INFO] [stdout] 18 | #[derive(Debug, RustcEncodable, RustcDecodable, PartialEq)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/seqtable/write.rs:25:17 [INFO] [stdout] | [INFO] [stdout] 25 | #[derive(Debug, RustcEncodable, RustcDecodable, PartialEq)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/seqtable/write.rs:25:33 [INFO] [stdout] | [INFO] [stdout] 25 | #[derive(Debug, RustcEncodable, RustcDecodable, PartialEq)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/write.rs:47:9 [INFO] [stdout] | [INFO] [stdout] 47 | try!(writer.write_u8(super::TBL_VERSION)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/write.rs:49:9 [INFO] [stdout] | [INFO] [stdout] 49 | try!(writer.write_u8(params.kmer_length)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/write.rs:50:9 [INFO] [stdout] | [INFO] [stdout] 50 | try!(writer.write_u8(params.unmasked_count)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/write.rs:52:9 [INFO] [stdout] | [INFO] [stdout] 52 | try!(writer.write_u8(params.plus_offset)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/write.rs:53:9 [INFO] [stdout] | [INFO] [stdout] 53 | try!(writer.write_u8(params.minus_offset)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/write.rs:54:9 [INFO] [stdout] | [INFO] [stdout] 54 | try!(writer.write_u16::(params.read_length)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/write.rs:55:9 [INFO] [stdout] | [INFO] [stdout] 55 | try!(writer.write_u8( if params.strand_specific { 1u8 } else { 0u8 })); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/write.rs:68:9 [INFO] [stdout] | [INFO] [stdout] 68 | try!(writer.write_u32::(blen)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/write.rs:71:9 [INFO] [stdout] | [INFO] [stdout] 71 | try!(writer.write_u64::(0)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/write.rs:73:9 [INFO] [stdout] | [INFO] [stdout] 73 | try!(writer.write_u64::(0)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/write.rs:75:9 [INFO] [stdout] | [INFO] [stdout] 75 | try!(writer.write_u64::(0)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/write.rs:60:21 [INFO] [stdout] | [INFO] [stdout] 60 | try!(writer.write_u8(1)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/write.rs:62:21 [INFO] [stdout] | [INFO] [stdout] 62 | try!(writer.write_u8(0)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/write.rs:169:9 [INFO] [stdout] | [INFO] [stdout] 169 | try!(self.writer.write(&self.output[0..(total as usize)])); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:37:9 [INFO] [stdout] | [INFO] [stdout] 37 | try!(reader.seek(SeekFrom::Start(0))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:84:9 [INFO] [stdout] | [INFO] [stdout] 84 | try!(reader.seek(SeekFrom::Start(offset))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:39:23 [INFO] [stdout] | [INFO] [stdout] 39 | let version = try!(reader.read_u8()); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:44:18 [INFO] [stdout] | [INFO] [stdout] 44 | let cl = try!(reader.read_u8()); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:45:18 [INFO] [stdout] | [INFO] [stdout] 45 | let uc = try!(reader.read_u8()); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:46:18 [INFO] [stdout] | [INFO] [stdout] 46 | let po = try!(reader.read_u8()); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:47:18 [INFO] [stdout] | [INFO] [stdout] 47 | let mo = try!(reader.read_u8()); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:48:18 [INFO] [stdout] | [INFO] [stdout] 48 | let rl = try!(reader.read_u16::()); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:49:18 [INFO] [stdout] | [INFO] [stdout] 49 | let ss = try!(reader.read_u8()) == 1; [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:54:28 [INFO] [stdout] | [INFO] [stdout] 54 | let flag = try!(reader.read_u8()); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:73:20 [INFO] [stdout] | [INFO] [stdout] 73 | let blen = try!(reader.read_u32::()); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:75:22 [INFO] [stdout] | [INFO] [stdout] 75 | let offset = try!(reader.read_u64::()); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:77:23 [INFO] [stdout] | [INFO] [stdout] 77 | let bufsize = try!(reader.read_u64::()) as usize; [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:79:29 [INFO] [stdout] | [INFO] [stdout] 79 | let counts_offset = try!(reader.read_u64::()); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:104:25 [INFO] [stdout] | [INFO] [stdout] 104 | try!(self.reader.seek(SeekFrom::Start(block.offset))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:129:21 [INFO] [stdout] | [INFO] [stdout] 129 | try!(self.reader.seek(SeekFrom::Start(block.offset))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:163:9 [INFO] [stdout] | [INFO] [stdout] 163 | try!(self.reader.seek(SeekFrom::Start(self.counts_offset))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:200:9 [INFO] [stdout] | [INFO] [stdout] 200 | try!(self.reader.seek(SeekFrom::Start(block_info.offset))); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:201:9 [INFO] [stdout] | [INFO] [stdout] 201 | try!(self.reader.read(buf)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/seqtable/read.rs:228:31 [INFO] [stdout] | [INFO] [stdout] 228 | let aux = try!(self.read_block(block_info)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::collections::VecDeque` [INFO] [stdout] --> src/fasta.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use std::collections::VecDeque; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around assigned value [INFO] [stdout] --> src/fasta/context/simple.rs:39:43 [INFO] [stdout] | [INFO] [stdout] 39 | self.rev_dna_value -= ( 3 - head as u64); [INFO] [stdout] | ^^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 39 - self.rev_dna_value -= ( 3 - head as u64); [INFO] [stdout] 39 + self.rev_dna_value -= 3 - head as u64; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/counts.rs:100:16 [INFO] [stdout] | [INFO] [stdout] 100 | let file = try!(File::open(filename)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/counts.rs:111:18 [INFO] [stdout] | [INFO] [stdout] 111 | let line = try!(res); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bigwig.rs:22:17 [INFO] [stdout] | [INFO] [stdout] 22 | let mut f = try!(File::create(filename)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bigwig.rs:25:9 [INFO] [stdout] | [INFO] [stdout] 25 | try!(write!(f, "{}\t{}\n", chroms[index], chrom_sizes[index])); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bigwig.rs:33:17 [INFO] [stdout] | [INFO] [stdout] 33 | let mut f = try!(File::create(filename)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bigwig.rs:39:9 [INFO] [stdout] | [INFO] [stdout] 39 | try!(write!(f, "variableStep chrom={}\n", chrom)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bigwig.rs:45:53 [INFO] [stdout] | [INFO] [stdout] 45 | Strand::Plus => if value.0 > 0f64 { try!(write!(f, "{}\t{}\n", pos, value.0)) }, [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bigwig.rs:46:54 [INFO] [stdout] | [INFO] [stdout] 46 | Strand::Minus => if value.1 > 0f64 { try!(write!(f, "{}\t{}\n", pos, -value.1)) }, [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bigwig.rs:47:33 [INFO] [stdout] | [INFO] [stdout] 47 | Strand::Both => try!(write!(f, "{}\t{}\n", pos, value.0 + value.1)), [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bigwig.rs:78:9 [INFO] [stdout] | [INFO] [stdout] 78 | try!(write_chrom_info(chrominfo_name, chroms, chrom_sizes)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/bigwig.rs:83:9 [INFO] [stdout] | [INFO] [stdout] 83 | try!(write_wiggle(wiggle_name, chroms, counts, strand)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/scale.rs:115:21 [INFO] [stdout] | [INFO] [stdout] 115 | let mut f = try!(File::create(filename.filename())); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/scale.rs:125:25 [INFO] [stdout] | [INFO] [stdout] 125 | try!(write!(f, "{}\t{}\t{}\t.\t{}\t+\n", chrom, pos, pos + 1, value.0)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/scale.rs:129:29 [INFO] [stdout] | [INFO] [stdout] 129 | ... try!(write!(f, "{}\t{}\t{}\t.\t{}\t-\n", chrom, pos, pos + 1, value.1)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/scale.rs:131:29 [INFO] [stdout] | [INFO] [stdout] 131 | ... try!(write!(f, "{}\t{}\t{}\t.\t{}\t-\n", chrom, pos, pos + 1, -value.1)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/scale.rs:135:21 [INFO] [stdout] | [INFO] [stdout] 135 | try!(write!(f, "{}\t{}\t{}\t.\t{}\n", chrom, pos, pos + 1, value.0 + value.1)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/scale.rs:167:21 [INFO] [stdout] | [INFO] [stdout] 167 | try!(write_bigwig(&output_minus.filename(), &self.chroms, &self.chrom_sizes, &self.counts, Strand::Minus)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/scale.rs:173:13 [INFO] [stdout] | [INFO] [stdout] 173 | try!(write_bigwig(&filename.filename(), &self.chroms, &self.chrom_sizes, &self.counts, Strand::Both)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `OsString` [INFO] [stdout] --> src/outputfile.rs:92:25 [INFO] [stdout] | [INFO] [stdout] 92 | use std::ffi::{OsStr, OsString}; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/counts.rs:253:75 [INFO] [stdout] | [INFO] [stdout] 253 | println!("Error: Failed to read BED file {}: {}", filename, e.description()); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/counts.rs:294:78 [INFO] [stdout] | [INFO] [stdout] 294 | println!("Error: Failed to open BAM '{}': {}", &bamfilename, err.description()); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/counts.rs:354:89 [INFO] [stdout] | [INFO] [stdout] 354 | println!("Error: Failed to open sequence table file '{}': {}", seqfile, err.description()); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/scale.rs:223:89 [INFO] [stdout] | [INFO] [stdout] 223 | println!("Error: Failed to open sequence table file '{}': {}", seqfile, err.description()); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/scale.rs:261:82 [INFO] [stdout] | [INFO] [stdout] 261 | println!("Error: Failed to open BAM file '{}': {}", bamfile, err.description()); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `is_minus` [INFO] [stdout] --> src/tallyread.rs:80:57 [INFO] [stdout] | [INFO] [stdout] 80 | fn insert_value(map: &mut Vec, pos: u32, is_minus: bool) { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_is_minus` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/seqtable/mod.rs:74:86 [INFO] [stdout] | [INFO] [stdout] 74 | println!("Error: Failed to open sequence table file '{}': {}", filename, err.description()); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/seqtable/dump.rs:53:90 [INFO] [stdout] | [INFO] [stdout] 53 | println!("Error: failed to open sequence table file '{}': {}", filename, err.description()); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/seqtable/dump.rs:95:90 [INFO] [stdout] | [INFO] [stdout] 95 | println!("Error: failed to open sequence table file '{}': {}", filename, err.description()); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `bw_stranded_filename` is never used [INFO] [stdout] --> src/scale.rs:142:8 [INFO] [stdout] | [INFO] [stdout] 37 | impl PileUp { [INFO] [stdout] | ----------- associated function in this implementation [INFO] [stdout] ... [INFO] [stdout] 142 | fn bw_stranded_filename(filename: &str, strand: Strand) -> OsString { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused return value of `Box::::from_raw` that must be used [INFO] [stdout] --> src/c_api.rs:86:12 [INFO] [stdout] | [INFO] [stdout] 86 | unsafe { Box::from_raw(ptr); } [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: call `drop(Box::from_raw(ptr))` if you intend to drop the `Box` [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] help: use `let _ = ...` to ignore the resulting value [INFO] [stdout] | [INFO] [stdout] 86 | unsafe { let _ = Box::from_raw(ptr); } [INFO] [stdout] | +++++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused return value of `Box::::from_raw` that must be used [INFO] [stdout] --> src/c_api.rs:267:12 [INFO] [stdout] | [INFO] [stdout] 267 | unsafe { Box::from_raw(ptr); } [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: call `drop(Box::from_raw(ptr))` if you intend to drop the `Box` [INFO] [stdout] help: use `let _ = ...` to ignore the resulting value [INFO] [stdout] | [INFO] [stdout] 267 | unsafe { let _ = Box::from_raw(ptr); } [INFO] [stdout] | +++++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/counts.rs:253:75 [INFO] [stdout] | [INFO] [stdout] 253 | println!("Error: Failed to read BED file {}: {}", filename, e.description()); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 73 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/counts.rs:294:78 [INFO] [stdout] | [INFO] [stdout] 294 | println!("Error: Failed to open BAM '{}': {}", &bamfilename, err.description()); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/counts.rs:354:89 [INFO] [stdout] | [INFO] [stdout] 354 | println!("Error: Failed to open sequence table file '{}': {}", seqfile, err.description()); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/scale.rs:223:89 [INFO] [stdout] | [INFO] [stdout] 223 | println!("Error: Failed to open sequence table file '{}': {}", seqfile, err.description()); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/scale.rs:261:82 [INFO] [stdout] | [INFO] [stdout] 261 | println!("Error: Failed to open BAM file '{}': {}", bamfile, err.description()); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/main.rs:78:17 [INFO] [stdout] | [INFO] [stdout] 78 | #[derive(Debug, RustcDecodable, Profile)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported [INFO] [stdout] --> src/main.rs:78:17 [INFO] [stdout] | [INFO] [stdout] 78 | #[derive(Debug, RustcDecodable, Profile)] [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `is_minus` [INFO] [stdout] --> src/tallyread.rs:80:57 [INFO] [stdout] | [INFO] [stdout] 80 | fn insert_value(map: &mut Vec, pos: u32, is_minus: bool) { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_is_minus` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/main.rs:375:78 [INFO] [stdout] | [INFO] [stdout] 375 | Err(err) => println!("Error producing BED file: {}", err.description()), [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/main.rs:394:81 [INFO] [stdout] | [INFO] [stdout] 394 | Err(err) => println!("Error producing BigWig file: {}", err.description()), [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/main.rs:375:78 [INFO] [stdout] | [INFO] [stdout] 375 | Err(err) => println!("Error producing BED file: {}", err.description()), [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/main.rs:394:81 [INFO] [stdout] | [INFO] [stdout] 394 | Err(err) => println!("Error producing BigWig file: {}", err.description()), [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `bw_stranded_filename` is never used [INFO] [stdout] --> src/scale.rs:142:8 [INFO] [stdout] | [INFO] [stdout] 37 | impl PileUp { [INFO] [stdout] | ----------- associated function in this implementation [INFO] [stdout] ... [INFO] [stdout] 142 | fn bw_stranded_filename(filename: &str, strand: Strand) -> OsString { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused return value of `Box::::from_raw` that must be used [INFO] [stdout] --> src/c_api.rs:86:12 [INFO] [stdout] | [INFO] [stdout] 86 | unsafe { Box::from_raw(ptr); } [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: call `drop(Box::from_raw(ptr))` if you intend to drop the `Box` [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] help: use `let _ = ...` to ignore the resulting value [INFO] [stdout] | [INFO] [stdout] 86 | unsafe { let _ = Box::from_raw(ptr); } [INFO] [stdout] | +++++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused return value of `Box::::from_raw` that must be used [INFO] [stdout] --> src/c_api.rs:267:12 [INFO] [stdout] | [INFO] [stdout] 267 | unsafe { Box::from_raw(ptr); } [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: call `drop(Box::from_raw(ptr))` if you intend to drop the `Box` [INFO] [stdout] help: use `let _ = ...` to ignore the resulting value [INFO] [stdout] | [INFO] [stdout] 267 | unsafe { let _ = Box::from_raw(ptr); } [INFO] [stdout] | +++++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 74 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 9.78s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: fs_extra v1.1.0, rustc-serialize v0.3.23 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] running `Command { std: "docker" "inspect" "02855f11d0b4cce6ebed847b2daa71c009af09fdd90da01f34901fbf441520a3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "02855f11d0b4cce6ebed847b2daa71c009af09fdd90da01f34901fbf441520a3", kill_on_drop: false }` [INFO] [stdout] 02855f11d0b4cce6ebed847b2daa71c009af09fdd90da01f34901fbf441520a3 [INFO] checking guertinlab/seqOutBias against try#031b389f0c31c0f91c9464d26313ae513dbe8d36 for pr-117593 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fguertinlab%2FseqOutBias" "/workspace/builds/worker-0-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/guertinlab/seqOutBias on toolchain 031b389f0c31c0f91c9464d26313ae513dbe8d36 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+031b389f0c31c0f91c9464d26313ae513dbe8d36" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/guertinlab/seqOutBias [INFO] finished tweaking git repo https://github.com/guertinlab/seqOutBias [INFO] tweaked toml for git repo https://github.com/guertinlab/seqOutBias written to /workspace/builds/worker-0-tc2/source/Cargo.toml [INFO] crate git repo https://github.com/guertinlab/seqOutBias already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+031b389f0c31c0f91c9464d26313ae513dbe8d36" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0c7e0e8312ad82a1bed3696438480b7da990d348377d3754e1cd95b06a8a36c7" "/opt/rustwide/cargo-home/bin/cargo" "+031b389f0c31c0f91c9464d26313ae513dbe8d36" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] bf3300a20f49c3978ae4a4dd3ae65c2845f628addd226a1c49d3f911a9729fe7 [INFO] running `Command { std: "docker" "start" "-a" "bf3300a20f49c3978ae4a4dd3ae65c2845f628addd226a1c49d3f911a9729fe7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "bf3300a20f49c3978ae4a4dd3ae65c2845f628addd226a1c49d3f911a9729fe7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bf3300a20f49c3978ae4a4dd3ae65c2845f628addd226a1c49d3f911a9729fe7", kill_on_drop: false }` [INFO] [stdout] bf3300a20f49c3978ae4a4dd3ae65c2845f628addd226a1c49d3f911a9729fe7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:0c7e0e8312ad82a1bed3696438480b7da990d348377d3754e1cd95b06a8a36c7" "/opt/rustwide/cargo-home/bin/cargo" "+031b389f0c31c0f91c9464d26313ae513dbe8d36" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 30c993685704f7e970a75889d756271cff2845e36f3529ab2973db00e60a5c54 [INFO] running `Command { std: "docker" "start" "-a" "30c993685704f7e970a75889d756271cff2845e36f3529ab2973db00e60a5c54", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.26 [INFO] [stderr] Compiling libc v0.2.92 [INFO] [stderr] Compiling syn v1.0.68 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling strsim v0.10.0 [INFO] [stderr] Compiling fnv v1.0.7 [INFO] [stderr] Compiling ident_case v1.0.1 [INFO] [stderr] Compiling winapi-build v0.1.1 [INFO] [stderr] Compiling serde_derive v1.0.125 [INFO] [stderr] Compiling serde v1.0.125 [INFO] [stderr] Checking winapi v0.2.8 [INFO] [stderr] Compiling version_check v0.1.5 [INFO] [stderr] Checking matches v0.1.6 [INFO] [stderr] Compiling gcc v0.3.45 [INFO] [stderr] Compiling ryu v0.2.7 [INFO] [stderr] Checking unicode-bidi v0.3.4 [INFO] [stderr] Checking unicode-normalization v0.1.5 [INFO] [stderr] Compiling num-traits v0.2.6 [INFO] [stderr] Checking cfg-if v0.1.6 [INFO] [stderr] Checking ucd-util v0.1.3 [INFO] [stderr] Compiling kernel32-sys v0.2.2 [INFO] [stderr] Checking rustc-serialize v0.3.23 [INFO] [stderr] Checking lazy_static v1.2.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling memchr v2.1.1 [INFO] [stderr] Checking either v1.1.0 [INFO] [stderr] Checking utf8-ranges v0.1.3 [INFO] [stderr] Checking percent-encoding v1.0.0 [INFO] [stderr] Compiling regex v1.0.6 [INFO] [stderr] Checking lazy_static v0.2.6 [INFO] [stderr] Checking regex-syntax v0.3.9 [INFO] [stderr] Compiling rust-htslib v0.12.1 [INFO] [stderr] Checking itertools v0.6.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking idna v0.1.2 [INFO] [stderr] Compiling seqOutBias v1.4.0 (/opt/rustwide/workdir) [INFO] [stderr] Checking thread_local v0.3.6 [INFO] [stderr] Checking regex-syntax v0.6.3 [INFO] [stderr] Checking ieee754 v0.2.2 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking quick-error v1.2.0 [INFO] [stderr] Checking itoa v0.4.3 [INFO] [stderr] Checking byteorder v0.5.3 [INFO] [stderr] Checking serde v0.7.15 [INFO] [stderr] Checking utf8-ranges v1.0.2 [INFO] [stderr] Compiling miniz-sys v0.1.9 [INFO] [stderr] Checking num-traits v0.1.37 [INFO] [stderr] Compiling escargot v0.2.0 [INFO] [stderr] Checking bitflags v0.9.1 [INFO] [stderr] Checking strsim v0.5.2 [INFO] [stderr] Checking difference v2.0.0 [INFO] [stderr] Checking remove_dir_all v0.5.1 [INFO] [stderr] Checking fs_extra v1.1.0 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Checking memchr v0.1.11 [INFO] [stderr] Checking rand v0.4.3 [INFO] [stderr] Checking thread-id v2.0.0 [INFO] [stderr] Checking aho-corasick v0.5.3 [INFO] [stderr] Checking url v1.7.2 [INFO] [stderr] Checking thread_local v0.2.7 [INFO] [stderr] Checking float-cmp v0.4.0 [INFO] [stderr] Checking regex v0.1.80 [INFO] [stderr] Checking aho-corasick v0.6.9 [INFO] [stderr] Checking flate2 v0.2.18 [INFO] [stderr] Checking rand v0.3.22 [INFO] [stderr] Checking tempdir v0.3.7 [INFO] [stderr] Checking tempfile v2.2.0 [INFO] [stderr] Checking bincode v0.5.9 [INFO] [stderr] Checking docopt v0.6.86 [INFO] [stderr] Checking predicates v0.5.2 [INFO] [stderr] Checking darling_core v0.12.2 [INFO] [stderr] Compiling darling_macro v0.12.2 [INFO] [stderr] Compiling darling v0.12.2 [INFO] [stderr] Checking profile v1.0.0 (/opt/rustwide/workdir/profile) [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: LC_ALL="C" PATH="/opt/rustwide/rustup-home/toolchains/031b389f0c31c0f91c9464d26313ae513dbe8d36/lib/rustlib/x86_64-unknown-linux-gnu/bin:/opt/rustwide/cargo-home/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin" VSLANG="1033" "cc" "-Wl,--version-script=/tmp/rustcpBWv0M/list" "-Wl,--no-undefined-version" "-m64" "/tmp/rustcpBWv0M/symbols.o" "/opt/rustwide/target/debug/deps/serde_derive-78b1b5ac6859674a.serde_derive.69ac34b1f0db064c-cgu.00.rcgu.o" "/opt/rustwide/target/debug/deps/serde_derive-78b1b5ac6859674a.serde_derive.69ac34b1f0db064c-cgu.01.rcgu.o" "/opt/rustwide/target/debug/deps/serde_derive-78b1b5ac6859674a.serde_derive.69ac34b1f0db064c-cgu.02.rcgu.o" "/opt/rustwide/target/debug/deps/serde_derive-78b1b5ac6859674a.serde_derive.69ac34b1f0db064c-cgu.03.rcgu.o" "/opt/rustwide/target/debug/deps/serde_derive-78b1b5ac6859674a.serde_derive.69ac34b1f0db064c-cgu.04.rcgu.o" "/opt/rustwide/target/debug/deps/serde_derive-78b1b5ac6859674a.serde_derive.69ac34b1f0db064c-cgu.05.rcgu.o" "/opt/rustwide/target/debug/deps/serde_derive-78b1b5ac6859674a.serde_derive.69ac34b1f0db064c-cgu.06.rcgu.o" "/opt/rustwide/target/debug/deps/serde_derive-78b1b5ac6859674a.serde_derive.69ac34b1f0db064c-cgu.07.rcgu.o" "/opt/rustwide/target/debug/deps/serde_derive-78b1b5ac6859674a.serde_derive.69ac34b1f0db064c-cgu.08.rcgu.o" "/opt/rustwide/target/debug/deps/serde_derive-78b1b5ac6859674a.serde_derive.69ac34b1f0db064c-cgu.09.rcgu.o" "/opt/rustwide/target/debug/deps/serde_derive-78b1b5ac6859674a.serde_derive.69ac34b1f0db064c-cgu.10.rcgu.o" "/opt/rustwide/target/debug/deps/serde_derive-78b1b5ac6859674a.serde_derive.69ac34b1f0db064c-cgu.11.rcgu.o" "/opt/rustwide/target/debug/deps/serde_derive-78b1b5ac6859674a.serde_derive.69ac34b1f0db064c-cgu.12.rcgu.o" "/opt/rustwide/target/debug/deps/serde_derive-78b1b5ac6859674a.serde_derive.69ac34b1f0db064c-cgu.13.rcgu.o" "/opt/rustwide/target/debug/deps/serde_derive-78b1b5ac6859674a.serde_derive.69ac34b1f0db064c-cgu.14.rcgu.o" "/opt/rustwide/target/debug/deps/serde_derive-78b1b5ac6859674a.serde_derive.69ac34b1f0db064c-cgu.15.rcgu.o" "/opt/rustwide/target/debug/deps/serde_derive-78b1b5ac6859674a.50z4efexibfbjbga.rcgu.rmeta" "/opt/rustwide/target/debug/deps/serde_derive-78b1b5ac6859674a.5apqs98lvd1lv7ia.rcgu.o" "-Wl,--as-needed" "-L" "/opt/rustwide/target/debug/deps" "-L" "/opt/rustwide/rustup-home/toolchains/031b389f0c31c0f91c9464d26313ae513dbe8d36/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/libsyn-180203905ca81a42.rlib" "/opt/rustwide/target/debug/deps/libquote-66a06a12d1ca2e1d.rlib" "/opt/rustwide/target/debug/deps/libproc_macro2-dbb20ea57a2128ae.rlib" "/opt/rustwide/target/debug/deps/libunicode_xid-0d304d8b950e871a.rlib" "/opt/rustwide/rustup-home/toolchains/031b389f0c31c0f91c9464d26313ae513dbe8d36/lib/rustlib/x86_64-unknown-linux-gnu/lib/libproc_macro-0a7b6abe36ef4793.rlib" "/opt/rustwide/rustup-home/toolchains/031b389f0c31c0f91c9464d26313ae513dbe8d36/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-64b7f85860d8e80f.rlib" "/opt/rustwide/rustup-home/toolchains/031b389f0c31c0f91c9464d26313ae513dbe8d36/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-a6e3f3f120c06a9d.rlib" "/opt/rustwide/rustup-home/toolchains/031b389f0c31c0f91c9464d26313ae513dbe8d36/lib/rustlib/x86_64-unknown-linux-gnu/lib/libobject-d9e2b538f14471de.rlib" "/opt/rustwide/rustup-home/toolchains/031b389f0c31c0f91c9464d26313ae513dbe8d36/lib/rustlib/x86_64-unknown-linux-gnu/lib/libmemchr-19a8f7e0e3580341.rlib" "/opt/rustwide/rustup-home/toolchains/031b389f0c31c0f91c9464d26313ae513dbe8d36/lib/rustlib/x86_64-unknown-linux-gnu/lib/libaddr2line-42fee89bdf9b228e.rlib" "/opt/rustwide/rustup-home/toolchains/031b389f0c31c0f91c9464d26313ae513dbe8d36/lib/rustlib/x86_64-unknown-linux-gnu/lib/libgimli-34254f7cdcc0cc46.rlib" "/opt/rustwide/rustup-home/toolchains/031b389f0c31c0f91c9464d26313ae513dbe8d36/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-44ef65cfbf83fcb8.rlib" "/opt/rustwide/rustup-home/toolchains/031b389f0c31c0f91c9464d26313ae513dbe8d36/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd_detect-c65acc9d349f7532.rlib" "/opt/rustwide/rustup-home/toolchains/031b389f0c31c0f91c9464d26313ae513dbe8d36/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-9c6ad0c05ee0b09a.rlib" "/opt/rustwide/rustup-home/toolchains/031b389f0c31c0f91c9464d26313ae513dbe8d36/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-decf62ffc2a6d6e8.rlib" "/opt/rustwide/rustup-home/toolchains/031b389f0c31c0f91c9464d26313ae513dbe8d36/lib/rustlib/x86_64-unknown-linux-gnu/lib/libminiz_oxide-26adb3c50c2a21e1.rlib" "/opt/rustwide/rustup-home/toolchains/031b389f0c31c0f91c9464d26313ae513dbe8d36/lib/rustlib/x86_64-unknown-linux-gnu/lib/libadler-0e893a92b0bf83dd.rlib" "/opt/rustwide/rustup-home/toolchains/031b389f0c31c0f91c9464d26313ae513dbe8d36/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-2ff912bc722ce8c9.rlib" "/opt/rustwide/rustup-home/toolchains/031b389f0c31c0f91c9464d26313ae513dbe8d36/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-5ec13f05f8d2bf50.rlib" "/opt/rustwide/rustup-home/toolchains/031b389f0c31c0f91c9464d26313ae513dbe8d36/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-2b93db426c5a26c2.rlib" "/opt/rustwide/rustup-home/toolchains/031b389f0c31c0f91c9464d26313ae513dbe8d36/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-26def7a8e3a3dff8.rlib" "/opt/rustwide/rustup-home/toolchains/031b389f0c31c0f91c9464d26313ae513dbe8d36/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-cd2f2bc505f56f50.rlib" "/opt/rustwide/rustup-home/toolchains/031b389f0c31c0f91c9464d26313ae513dbe8d36/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-ec02dd343723da85.rlib" "/opt/rustwide/rustup-home/toolchains/031b389f0c31c0f91c9464d26313ae513dbe8d36/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-2f4d671a9b4d2563.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/rustup-home/toolchains/031b389f0c31c0f91c9464d26313ae513dbe8d36/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/opt/rustwide/target/debug/deps/libserde_derive-78b1b5ac6859674a.so" "-Wl,--gc-sections" "-shared" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: /usr/bin/ld: final link failed: No space left on device [INFO] [stdout] collect2: error: ld returned 1 exit status [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to previous error [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `serde_derive` (lib) due to 2 previous errors [INFO] running `Command { std: "docker" "inspect" "30c993685704f7e970a75889d756271cff2845e36f3529ab2973db00e60a5c54", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "30c993685704f7e970a75889d756271cff2845e36f3529ab2973db00e60a5c54", kill_on_drop: false }` [INFO] [stdout] 30c993685704f7e970a75889d756271cff2845e36f3529ab2973db00e60a5c54