[INFO] cloning repository https://github.com/guertinlab/seqOutBias
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/guertinlab/seqOutBias" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fguertinlab%2FseqOutBias", kill_on_drop: false }`
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[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 1446ebc35d1cf5ede03fe87fab7650a5e8c0516d
[INFO] checking guertinlab/seqOutBias against master#5a9e0e87877857f601480d16739b4edd9cb3a426 for pr-117593-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fguertinlab%2FseqOutBias" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
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[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/guertinlab/seqOutBias on toolchain 5a9e0e87877857f601480d16739b4edd9cb3a426
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[INFO] tweaked toml for git repo https://github.com/guertinlab/seqOutBias written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/guertinlab/seqOutBias already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+5a9e0e87877857f601480d16739b4edd9cb3a426" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/tallyread.rs:75:9
[INFO] [stdout]    |
[INFO] [stdout] 75 |         try!(result.read_sequence_data());
[INFO] [stdout]    |         ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/tallyread.rs:103:40
[INFO] [stdout]     |
[INFO] [stdout] 103 |             let (seq, pos, is_minus) = try!(parse_line(&self.line));
[INFO] [stdout]     |                                        ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/tallyread.rs:138:9
[INFO] [stdout]     |
[INFO] [stdout] 138 |         try!(self.read_sequence_data());
[INFO] [stdout]     |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported
[INFO] [stdout]   --> src/seqtable/write.rs:18:17
[INFO] [stdout]    |
[INFO] [stdout] 18 | #[derive(Debug, RustcEncodable, RustcDecodable, PartialEq)]
[INFO] [stdout]    |                 ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported
[INFO] [stdout]   --> src/seqtable/write.rs:18:33
[INFO] [stdout]    |
[INFO] [stdout] 18 | #[derive(Debug, RustcEncodable, RustcDecodable, PartialEq)]
[INFO] [stdout]    |                                 ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported
[INFO] [stdout]   --> src/seqtable/write.rs:25:17
[INFO] [stdout]    |
[INFO] [stdout] 25 | #[derive(Debug, RustcEncodable, RustcDecodable, PartialEq)]
[INFO] [stdout]    |                 ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported
[INFO] [stdout]   --> src/seqtable/write.rs:25:33
[INFO] [stdout]    |
[INFO] [stdout] 25 | #[derive(Debug, RustcEncodable, RustcDecodable, PartialEq)]
[INFO] [stdout]    |                                 ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:47:9
[INFO] [stdout]    |
[INFO] [stdout] 47 |         try!(writer.write_u8(super::TBL_VERSION));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:49:9
[INFO] [stdout]    |
[INFO] [stdout] 49 |         try!(writer.write_u8(params.kmer_length));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:50:9
[INFO] [stdout]    |
[INFO] [stdout] 50 |         try!(writer.write_u8(params.unmasked_count));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:52:9
[INFO] [stdout]    |
[INFO] [stdout] 52 |         try!(writer.write_u8(params.plus_offset));  
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:53:9
[INFO] [stdout]    |
[INFO] [stdout] 53 |         try!(writer.write_u8(params.minus_offset));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:54:9
[INFO] [stdout]    |
[INFO] [stdout] 54 |         try!(writer.write_u16::<LittleEndian>(params.read_length));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:55:9
[INFO] [stdout]    |
[INFO] [stdout] 55 |         try!(writer.write_u8( if params.strand_specific { 1u8 } else { 0u8 }));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:68:9
[INFO] [stdout]    |
[INFO] [stdout] 68 |         try!(writer.write_u32::<LittleEndian>(blen));        
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:71:9
[INFO] [stdout]    |
[INFO] [stdout] 71 |         try!(writer.write_u64::<LittleEndian>(0));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:73:9
[INFO] [stdout]    |
[INFO] [stdout] 73 |         try!(writer.write_u64::<LittleEndian>(0));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:75:9
[INFO] [stdout]    |
[INFO] [stdout] 75 |         try!(writer.write_u64::<LittleEndian>(0));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:60:21
[INFO] [stdout]    |
[INFO] [stdout] 60 |                     try!(writer.write_u8(1));
[INFO] [stdout]    |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:62:21
[INFO] [stdout]    |
[INFO] [stdout] 62 |                     try!(writer.write_u8(0));
[INFO] [stdout]    |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/seqtable/write.rs:169:9
[INFO] [stdout]     |
[INFO] [stdout] 169 |         try!(self.writer.write(&self.output[0..(total as usize)]));
[INFO] [stdout]     |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:37:9
[INFO] [stdout]    |
[INFO] [stdout] 37 |         try!(reader.seek(SeekFrom::Start(0)));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:84:9
[INFO] [stdout]    |
[INFO] [stdout] 84 |         try!(reader.seek(SeekFrom::Start(offset)));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:39:23
[INFO] [stdout]    |
[INFO] [stdout] 39 |         let version = try!(reader.read_u8());
[INFO] [stdout]    |                       ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:44:18
[INFO] [stdout]    |
[INFO] [stdout] 44 |         let cl = try!(reader.read_u8());
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:45:18
[INFO] [stdout]    |
[INFO] [stdout] 45 |         let uc = try!(reader.read_u8());
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:46:18
[INFO] [stdout]    |
[INFO] [stdout] 46 |         let po = try!(reader.read_u8());
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:47:18
[INFO] [stdout]    |
[INFO] [stdout] 47 |         let mo = try!(reader.read_u8());
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:48:18
[INFO] [stdout]    |
[INFO] [stdout] 48 |         let rl = try!(reader.read_u16::<LittleEndian>());
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:49:18
[INFO] [stdout]    |
[INFO] [stdout] 49 |         let ss = try!(reader.read_u8()) == 1;
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:54:28
[INFO] [stdout]    |
[INFO] [stdout] 54 |                 let flag = try!(reader.read_u8());
[INFO] [stdout]    |                            ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:73:20
[INFO] [stdout]    |
[INFO] [stdout] 73 |         let blen = try!(reader.read_u32::<LittleEndian>());
[INFO] [stdout]    |                    ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:75:22
[INFO] [stdout]    |
[INFO] [stdout] 75 |         let offset = try!(reader.read_u64::<LittleEndian>());
[INFO] [stdout]    |                      ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:77:23
[INFO] [stdout]    |
[INFO] [stdout] 77 |         let bufsize = try!(reader.read_u64::<LittleEndian>()) as usize;
[INFO] [stdout]    |                       ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:79:29
[INFO] [stdout]    |
[INFO] [stdout] 79 |         let counts_offset = try!(reader.read_u64::<LittleEndian>());
[INFO] [stdout]    |                             ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/seqtable/read.rs:104:25
[INFO] [stdout]     |
[INFO] [stdout] 104 |                         try!(self.reader.seek(SeekFrom::Start(block.offset)));
[INFO] [stdout]     |                         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/seqtable/read.rs:129:21
[INFO] [stdout]     |
[INFO] [stdout] 129 |                     try!(self.reader.seek(SeekFrom::Start(block.offset)));
[INFO] [stdout]     |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/seqtable/read.rs:163:9
[INFO] [stdout]     |
[INFO] [stdout] 163 |         try!(self.reader.seek(SeekFrom::Start(self.counts_offset)));
[INFO] [stdout]     |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/seqtable/read.rs:200:9
[INFO] [stdout]     |
[INFO] [stdout] 200 |         try!(self.reader.seek(SeekFrom::Start(block_info.offset)));
[INFO] [stdout]     |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/seqtable/read.rs:201:9
[INFO] [stdout]     |
[INFO] [stdout] 201 |         try!(self.reader.read(buf));
[INFO] [stdout]     |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/seqtable/read.rs:228:31
[INFO] [stdout]     |
[INFO] [stdout] 228 |                     let aux = try!(self.read_block(block_info));
[INFO] [stdout]     |                               ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::VecDeque`
[INFO] [stdout]  --> src/fasta.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 | use std::collections::VecDeque;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around assigned value
[INFO] [stdout]   --> src/fasta/context/simple.rs:39:43
[INFO] [stdout]    |
[INFO] [stdout] 39 |                     self.rev_dna_value -= ( 3 - head as u64);
[INFO] [stdout]    |                                           ^^               ^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_parens)]` on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 39 -                     self.rev_dna_value -= ( 3 - head as u64);
[INFO] [stdout] 39 +                     self.rev_dna_value -= 3 - head as u64;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/counts.rs:100:16
[INFO] [stdout]     |
[INFO] [stdout] 100 |     let file = try!(File::open(filename));
[INFO] [stdout]     |                ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/counts.rs:111:18
[INFO] [stdout]     |
[INFO] [stdout] 111 |       let line = try!(res);
[INFO] [stdout]     |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:22:17
[INFO] [stdout]    |
[INFO] [stdout] 22 |     let mut f = try!(File::create(filename));
[INFO] [stdout]    |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:25:9
[INFO] [stdout]    |
[INFO] [stdout] 25 |         try!(write!(f, "{}\t{}\n", chroms[index], chrom_sizes[index]));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:33:17
[INFO] [stdout]    |
[INFO] [stdout] 33 |     let mut f = try!(File::create(filename));
[INFO] [stdout]    |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:39:9
[INFO] [stdout]    |
[INFO] [stdout] 39 |         try!(write!(f, "variableStep chrom={}\n", chrom));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:45:53
[INFO] [stdout]    |
[INFO] [stdout] 45 |                 Strand::Plus => if value.0 > 0f64 { try!(write!(f, "{}\t{}\n", pos, value.0)) },
[INFO] [stdout]    |                                                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:46:54
[INFO] [stdout]    |
[INFO] [stdout] 46 |                 Strand::Minus => if value.1 > 0f64 { try!(write!(f, "{}\t{}\n", pos, -value.1)) },
[INFO] [stdout]    |                                                      ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:47:33
[INFO] [stdout]    |
[INFO] [stdout] 47 |                 Strand::Both => try!(write!(f, "{}\t{}\n", pos, value.0 + value.1)),
[INFO] [stdout]    |                                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:78:9
[INFO] [stdout]    |
[INFO] [stdout] 78 |         try!(write_chrom_info(chrominfo_name, chroms, chrom_sizes));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:83:9
[INFO] [stdout]    |
[INFO] [stdout] 83 |         try!(write_wiggle(wiggle_name, chroms, counts, strand));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/scale.rs:115:21
[INFO] [stdout]     |
[INFO] [stdout] 115 |         let mut f = try!(File::create(filename.filename()));
[INFO] [stdout]     |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/scale.rs:125:25
[INFO] [stdout]     |
[INFO] [stdout] 125 |                         try!(write!(f, "{}\t{}\t{}\t.\t{}\t+\n", chrom, pos, pos + 1, value.0));
[INFO] [stdout]     |                         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/scale.rs:129:29
[INFO] [stdout]     |
[INFO] [stdout] 129 | ...                   try!(write!(f, "{}\t{}\t{}\t.\t{}\t-\n", chrom, pos, pos + 1, value.1));
[INFO] [stdout]     |                       ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/scale.rs:131:29
[INFO] [stdout]     |
[INFO] [stdout] 131 | ...                   try!(write!(f, "{}\t{}\t{}\t.\t{}\t-\n", chrom, pos, pos + 1, -value.1));
[INFO] [stdout]     |                       ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/scale.rs:135:21
[INFO] [stdout]     |
[INFO] [stdout] 135 |                     try!(write!(f, "{}\t{}\t{}\t.\t{}\n", chrom, pos, pos + 1, value.0 + value.1));
[INFO] [stdout]     |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/scale.rs:167:21
[INFO] [stdout]     |
[INFO] [stdout] 167 |                     try!(write_bigwig(&output_minus.filename(), &self.chroms, &self.chrom_sizes, &self.counts, Strand::Minus));
[INFO] [stdout]     |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/scale.rs:173:13
[INFO] [stdout]     |
[INFO] [stdout] 173 |             try!(write_bigwig(&filename.filename(), &self.chroms, &self.chrom_sizes, &self.counts, Strand::Both));
[INFO] [stdout]     |             ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Checking assert_cmd v0.4.0
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]   --> src/seqtable/mod.rs:74:86
[INFO] [stdout]    |
[INFO] [stdout] 74 |         println!("Error: Failed to open sequence table file '{}': {}", filename, err.description());
[INFO] [stdout]    |                                                                                      ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]   --> src/seqtable/dump.rs:53:90
[INFO] [stdout]    |
[INFO] [stdout] 53 |             println!("Error: failed to open sequence table file '{}': {}", filename, err.description());
[INFO] [stdout]    |                                                                                          ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]   --> src/seqtable/dump.rs:95:90
[INFO] [stdout]    |
[INFO] [stdout] 95 |             println!("Error: failed to open sequence table file '{}': {}", filename, err.description());
[INFO] [stdout]    |                                                                                          ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/counts.rs:253:75
[INFO] [stdout]     |
[INFO] [stdout] 253 |             println!("Error: Failed to read BED file {}: {}", filename, e.description()); 
[INFO] [stdout]     |                                                                           ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/counts.rs:294:78
[INFO] [stdout]     |
[INFO] [stdout] 294 |             println!("Error: Failed to open BAM '{}': {}", &bamfilename, err.description());
[INFO] [stdout]     |                                                                              ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/counts.rs:354:89
[INFO] [stdout]     |
[INFO] [stdout] 354 |             println!("Error: Failed to open sequence table file '{}': {}", seqfile, err.description());
[INFO] [stdout]     |                                                                                         ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/scale.rs:223:89
[INFO] [stdout]     |
[INFO] [stdout] 223 |             println!("Error: Failed to open sequence table file '{}': {}", seqfile, err.description());
[INFO] [stdout]     |                                                                                         ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/scale.rs:261:82
[INFO] [stdout]     |
[INFO] [stdout] 261 |                 println!("Error: Failed to open BAM file '{}': {}", bamfile, err.description());
[INFO] [stdout]     |                                                                                  ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `is_minus`
[INFO] [stdout]   --> src/tallyread.rs:80:57
[INFO] [stdout]    |
[INFO] [stdout] 80 |     fn insert_value(map: &mut Vec<UnMapCell>, pos: u32, is_minus: bool) {
[INFO] [stdout]    |                                                         ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_is_minus`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function `bw_stranded_filename` is never used
[INFO] [stdout]    --> src/scale.rs:142:8
[INFO] [stdout]     |
[INFO] [stdout] 37  | impl PileUp {
[INFO] [stdout]     | ----------- associated function in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 142 |     fn bw_stranded_filename(filename: &str, strand: Strand) -> OsString {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused return value of `Box::<T>::from_raw` that must be used
[INFO] [stdout]   --> src/c_api.rs:86:12
[INFO] [stdout]    |
[INFO] [stdout] 86 |   unsafe { Box::from_raw(ptr); }
[INFO] [stdout]    |            ^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: call `drop(Box::from_raw(ptr))` if you intend to drop the `Box`
[INFO] [stdout]    = note: `#[warn(unused_must_use)]` on by default
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]    |
[INFO] [stdout] 86 |   unsafe { let _ = Box::from_raw(ptr); }
[INFO] [stdout]    |            +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused return value of `Box::<T>::from_raw` that must be used
[INFO] [stdout]    --> src/c_api.rs:267:12
[INFO] [stdout]     |
[INFO] [stdout] 267 |   unsafe { Box::from_raw(ptr); }
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: call `drop(Box::from_raw(ptr))` if you intend to drop the `Box`
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]     |
[INFO] [stdout] 267 |   unsafe { let _ = Box::from_raw(ptr); }
[INFO] [stdout]     |            +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 73 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported
[INFO] [stdout]   --> src/main.rs:78:17
[INFO] [stdout]    |
[INFO] [stdout] 78 | #[derive(Debug, RustcDecodable, Profile)]
[INFO] [stdout]    |                 ^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported
[INFO] [stdout]   --> src/main.rs:78:17
[INFO] [stdout]    |
[INFO] [stdout] 78 | #[derive(Debug, RustcDecodable, Profile)]
[INFO] [stdout]    |                 ^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/main.rs:375:78
[INFO] [stdout]     |
[INFO] [stdout] 375 |                     Err(err) => println!("Error producing BED file: {}", err.description()),
[INFO] [stdout]     |                                                                              ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/main.rs:394:81
[INFO] [stdout]     |
[INFO] [stdout] 394 |                     Err(err) => println!("Error producing BigWig file: {}", err.description()),
[INFO] [stdout]     |                                                                                 ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/tallyread.rs:75:9
[INFO] [stdout]    |
[INFO] [stdout] 75 |         try!(result.read_sequence_data());
[INFO] [stdout]    |         ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/tallyread.rs:103:40
[INFO] [stdout]     |
[INFO] [stdout] 103 |             let (seq, pos, is_minus) = try!(parse_line(&self.line));
[INFO] [stdout]     |                                        ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/tallyread.rs:138:9
[INFO] [stdout]     |
[INFO] [stdout] 138 |         try!(self.read_sequence_data());
[INFO] [stdout]     |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported
[INFO] [stdout]   --> src/seqtable/write.rs:18:17
[INFO] [stdout]    |
[INFO] [stdout] 18 | #[derive(Debug, RustcEncodable, RustcDecodable, PartialEq)]
[INFO] [stdout]    |                 ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported
[INFO] [stdout]   --> src/seqtable/write.rs:18:33
[INFO] [stdout]    |
[INFO] [stdout] 18 | #[derive(Debug, RustcEncodable, RustcDecodable, PartialEq)]
[INFO] [stdout]    |                                 ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported
[INFO] [stdout]   --> src/seqtable/write.rs:25:17
[INFO] [stdout]    |
[INFO] [stdout] 25 | #[derive(Debug, RustcEncodable, RustcDecodable, PartialEq)]
[INFO] [stdout]    |                 ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported
[INFO] [stdout]   --> src/seqtable/write.rs:25:33
[INFO] [stdout]    |
[INFO] [stdout] 25 | #[derive(Debug, RustcEncodable, RustcDecodable, PartialEq)]
[INFO] [stdout]    |                                 ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:47:9
[INFO] [stdout]    |
[INFO] [stdout] 47 |         try!(writer.write_u8(super::TBL_VERSION));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:49:9
[INFO] [stdout]    |
[INFO] [stdout] 49 |         try!(writer.write_u8(params.kmer_length));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:50:9
[INFO] [stdout]    |
[INFO] [stdout] 50 |         try!(writer.write_u8(params.unmasked_count));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:52:9
[INFO] [stdout]    |
[INFO] [stdout] 52 |         try!(writer.write_u8(params.plus_offset));  
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:53:9
[INFO] [stdout]    |
[INFO] [stdout] 53 |         try!(writer.write_u8(params.minus_offset));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:54:9
[INFO] [stdout]    |
[INFO] [stdout] 54 |         try!(writer.write_u16::<LittleEndian>(params.read_length));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:55:9
[INFO] [stdout]    |
[INFO] [stdout] 55 |         try!(writer.write_u8( if params.strand_specific { 1u8 } else { 0u8 }));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:68:9
[INFO] [stdout]    |
[INFO] [stdout] 68 |         try!(writer.write_u32::<LittleEndian>(blen));        
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:71:9
[INFO] [stdout]    |
[INFO] [stdout] 71 |         try!(writer.write_u64::<LittleEndian>(0));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:73:9
[INFO] [stdout]    |
[INFO] [stdout] 73 |         try!(writer.write_u64::<LittleEndian>(0));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:75:9
[INFO] [stdout]    |
[INFO] [stdout] 75 |         try!(writer.write_u64::<LittleEndian>(0));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:60:21
[INFO] [stdout]    |
[INFO] [stdout] 60 |                     try!(writer.write_u8(1));
[INFO] [stdout]    |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:62:21
[INFO] [stdout]    |
[INFO] [stdout] 62 |                     try!(writer.write_u8(0));
[INFO] [stdout]    |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/seqtable/write.rs:169:9
[INFO] [stdout]     |
[INFO] [stdout] 169 |         try!(self.writer.write(&self.output[0..(total as usize)]));
[INFO] [stdout]     |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:37:9
[INFO] [stdout]    |
[INFO] [stdout] 37 |         try!(reader.seek(SeekFrom::Start(0)));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:84:9
[INFO] [stdout]    |
[INFO] [stdout] 84 |         try!(reader.seek(SeekFrom::Start(offset)));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:39:23
[INFO] [stdout]    |
[INFO] [stdout] 39 |         let version = try!(reader.read_u8());
[INFO] [stdout]    |                       ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:44:18
[INFO] [stdout]    |
[INFO] [stdout] 44 |         let cl = try!(reader.read_u8());
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:45:18
[INFO] [stdout]    |
[INFO] [stdout] 45 |         let uc = try!(reader.read_u8());
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:46:18
[INFO] [stdout]    |
[INFO] [stdout] 46 |         let po = try!(reader.read_u8());
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:47:18
[INFO] [stdout]    |
[INFO] [stdout] 47 |         let mo = try!(reader.read_u8());
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:48:18
[INFO] [stdout]    |
[INFO] [stdout] 48 |         let rl = try!(reader.read_u16::<LittleEndian>());
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:49:18
[INFO] [stdout]    |
[INFO] [stdout] 49 |         let ss = try!(reader.read_u8()) == 1;
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:54:28
[INFO] [stdout]    |
[INFO] [stdout] 54 |                 let flag = try!(reader.read_u8());
[INFO] [stdout]    |                            ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:73:20
[INFO] [stdout]    |
[INFO] [stdout] 73 |         let blen = try!(reader.read_u32::<LittleEndian>());
[INFO] [stdout]    |                    ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:75:22
[INFO] [stdout]    |
[INFO] [stdout] 75 |         let offset = try!(reader.read_u64::<LittleEndian>());
[INFO] [stdout]    |                      ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:77:23
[INFO] [stdout]    |
[INFO] [stdout] 77 |         let bufsize = try!(reader.read_u64::<LittleEndian>()) as usize;
[INFO] [stdout]    |                       ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:79:29
[INFO] [stdout]    |
[INFO] [stdout] 79 |         let counts_offset = try!(reader.read_u64::<LittleEndian>());
[INFO] [stdout]    |                             ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/seqtable/read.rs:104:25
[INFO] [stdout]     |
[INFO] [stdout] 104 |                         try!(self.reader.seek(SeekFrom::Start(block.offset)));
[INFO] [stdout]     |                         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/seqtable/read.rs:129:21
[INFO] [stdout]     |
[INFO] [stdout] 129 |                     try!(self.reader.seek(SeekFrom::Start(block.offset)));
[INFO] [stdout]     |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/seqtable/read.rs:163:9
[INFO] [stdout]     |
[INFO] [stdout] 163 |         try!(self.reader.seek(SeekFrom::Start(self.counts_offset)));
[INFO] [stdout]     |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/seqtable/read.rs:200:9
[INFO] [stdout]     |
[INFO] [stdout] 200 |         try!(self.reader.seek(SeekFrom::Start(block_info.offset)));
[INFO] [stdout]     |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/seqtable/read.rs:201:9
[INFO] [stdout]     |
[INFO] [stdout] 201 |         try!(self.reader.read(buf));
[INFO] [stdout]     |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/seqtable/read.rs:228:31
[INFO] [stdout]     |
[INFO] [stdout] 228 |                     let aux = try!(self.read_block(block_info));
[INFO] [stdout]     |                               ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::VecDeque`
[INFO] [stdout]  --> src/fasta.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 | use std::collections::VecDeque;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/main.rs:375:78
[INFO] [stdout]     |
[INFO] [stdout] 375 |                     Err(err) => println!("Error producing BED file: {}", err.description()),
[INFO] [stdout]     |                                                                              ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around assigned value
[INFO] [stdout]   --> src/fasta/context/simple.rs:39:43
[INFO] [stdout]    |
[INFO] [stdout] 39 |                     self.rev_dna_value -= ( 3 - head as u64);
[INFO] [stdout]    |                                           ^^               ^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_parens)]` on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 39 -                     self.rev_dna_value -= ( 3 - head as u64);
[INFO] [stdout] 39 +                     self.rev_dna_value -= 3 - head as u64;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/counts.rs:100:16
[INFO] [stdout]     |
[INFO] [stdout] 100 |     let file = try!(File::open(filename));
[INFO] [stdout]     |                ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/counts.rs:111:18
[INFO] [stdout]     |
[INFO] [stdout] 111 |       let line = try!(res);
[INFO] [stdout]     |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:22:17
[INFO] [stdout]    |
[INFO] [stdout] 22 |     let mut f = try!(File::create(filename));
[INFO] [stdout]    |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:25:9
[INFO] [stdout]    |
[INFO] [stdout] 25 |         try!(write!(f, "{}\t{}\n", chroms[index], chrom_sizes[index]));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:33:17
[INFO] [stdout]    |
[INFO] [stdout] 33 |     let mut f = try!(File::create(filename));
[INFO] [stdout]    |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:39:9
[INFO] [stdout]    |
[INFO] [stdout] 39 |         try!(write!(f, "variableStep chrom={}\n", chrom));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:45:53
[INFO] [stdout]    |
[INFO] [stdout] 45 |                 Strand::Plus => if value.0 > 0f64 { try!(write!(f, "{}\t{}\n", pos, value.0)) },
[INFO] [stdout]    |                                                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:46:54
[INFO] [stdout]    |
[INFO] [stdout] 46 |                 Strand::Minus => if value.1 > 0f64 { try!(write!(f, "{}\t{}\n", pos, -value.1)) },
[INFO] [stdout]    |                                                      ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:47:33
[INFO] [stdout]    |
[INFO] [stdout] 47 |                 Strand::Both => try!(write!(f, "{}\t{}\n", pos, value.0 + value.1)),
[INFO] [stdout]    |                                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:78:9
[INFO] [stdout]    |
[INFO] [stdout] 78 |         try!(write_chrom_info(chrominfo_name, chroms, chrom_sizes));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:83:9
[INFO] [stdout]    |
[INFO] [stdout] 83 |         try!(write_wiggle(wiggle_name, chroms, counts, strand));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/scale.rs:115:21
[INFO] [stdout]     |
[INFO] [stdout] 115 |         let mut f = try!(File::create(filename.filename()));
[INFO] [stdout]     |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/scale.rs:125:25
[INFO] [stdout]     |
[INFO] [stdout] 125 |                         try!(write!(f, "{}\t{}\t{}\t.\t{}\t+\n", chrom, pos, pos + 1, value.0));
[INFO] [stdout]     |                         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/main.rs:394:81
[INFO] [stdout]     |
[INFO] [stdout] 394 |                     Err(err) => println!("Error producing BigWig file: {}", err.description()),
[INFO] [stdout]     |                                                                                 ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/scale.rs:129:29
[INFO] [stdout]     |
[INFO] [stdout] 129 | ...                   try!(write!(f, "{}\t{}\t{}\t.\t{}\t-\n", chrom, pos, pos + 1, value.1));
[INFO] [stdout]     |                       ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/scale.rs:131:29
[INFO] [stdout]     |
[INFO] [stdout] 131 | ...                   try!(write!(f, "{}\t{}\t{}\t.\t{}\t-\n", chrom, pos, pos + 1, -value.1));
[INFO] [stdout]     |                       ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/scale.rs:135:21
[INFO] [stdout]     |
[INFO] [stdout] 135 |                     try!(write!(f, "{}\t{}\t{}\t.\t{}\n", chrom, pos, pos + 1, value.0 + value.1));
[INFO] [stdout]     |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/scale.rs:167:21
[INFO] [stdout]     |
[INFO] [stdout] 167 |                     try!(write_bigwig(&output_minus.filename(), &self.chroms, &self.chrom_sizes, &self.counts, Strand::Minus));
[INFO] [stdout]     |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/scale.rs:173:13
[INFO] [stdout]     |
[INFO] [stdout] 173 |             try!(write_bigwig(&filename.filename(), &self.chroms, &self.chrom_sizes, &self.counts, Strand::Both));
[INFO] [stdout]     |             ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `OsString`
[INFO] [stdout]   --> src/outputfile.rs:92:25
[INFO] [stdout]    |
[INFO] [stdout] 92 |   use std::ffi::{OsStr, OsString};
[INFO] [stdout]    |                         ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 3 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]   --> src/seqtable/mod.rs:74:86
[INFO] [stdout]    |
[INFO] [stdout] 74 |         println!("Error: Failed to open sequence table file '{}': {}", filename, err.description());
[INFO] [stdout]    |                                                                                      ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 3 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]   --> src/seqtable/dump.rs:53:90
[INFO] [stdout]    |
[INFO] [stdout] 53 |             println!("Error: failed to open sequence table file '{}': {}", filename, err.description());
[INFO] [stdout]    |                                                                                          ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]   --> src/seqtable/dump.rs:95:90
[INFO] [stdout]    |
[INFO] [stdout] 95 |             println!("Error: failed to open sequence table file '{}': {}", filename, err.description());
[INFO] [stdout]    |                                                                                          ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/counts.rs:253:75
[INFO] [stdout]     |
[INFO] [stdout] 253 |             println!("Error: Failed to read BED file {}: {}", filename, e.description()); 
[INFO] [stdout]     |                                                                           ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/counts.rs:294:78
[INFO] [stdout]     |
[INFO] [stdout] 294 |             println!("Error: Failed to open BAM '{}': {}", &bamfilename, err.description());
[INFO] [stdout]     |                                                                              ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/counts.rs:354:89
[INFO] [stdout]     |
[INFO] [stdout] 354 |             println!("Error: Failed to open sequence table file '{}': {}", seqfile, err.description());
[INFO] [stdout]     |                                                                                         ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/scale.rs:223:89
[INFO] [stdout]     |
[INFO] [stdout] 223 |             println!("Error: Failed to open sequence table file '{}': {}", seqfile, err.description());
[INFO] [stdout]     |                                                                                         ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/scale.rs:261:82
[INFO] [stdout]     |
[INFO] [stdout] 261 |                 println!("Error: Failed to open BAM file '{}': {}", bamfile, err.description());
[INFO] [stdout]     |                                                                                  ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `is_minus`
[INFO] [stdout]   --> src/tallyread.rs:80:57
[INFO] [stdout]    |
[INFO] [stdout] 80 |     fn insert_value(map: &mut Vec<UnMapCell>, pos: u32, is_minus: bool) {
[INFO] [stdout]    |                                                         ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_is_minus`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function `bw_stranded_filename` is never used
[INFO] [stdout]    --> src/scale.rs:142:8
[INFO] [stdout]     |
[INFO] [stdout] 37  | impl PileUp {
[INFO] [stdout]     | ----------- associated function in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 142 |     fn bw_stranded_filename(filename: &str, strand: Strand) -> OsString {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused return value of `Box::<T>::from_raw` that must be used
[INFO] [stdout]   --> src/c_api.rs:86:12
[INFO] [stdout]    |
[INFO] [stdout] 86 |   unsafe { Box::from_raw(ptr); }
[INFO] [stdout]    |            ^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: call `drop(Box::from_raw(ptr))` if you intend to drop the `Box`
[INFO] [stdout]    = note: `#[warn(unused_must_use)]` on by default
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]    |
[INFO] [stdout] 86 |   unsafe { let _ = Box::from_raw(ptr); }
[INFO] [stdout]    |            +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused return value of `Box::<T>::from_raw` that must be used
[INFO] [stdout]    --> src/c_api.rs:267:12
[INFO] [stdout]     |
[INFO] [stdout] 267 |   unsafe { Box::from_raw(ptr); }
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: call `drop(Box::from_raw(ptr))` if you intend to drop the `Box`
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]     |
[INFO] [stdout] 267 |   unsafe { let _ = Box::from_raw(ptr); }
[INFO] [stdout]     |            +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 74 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 27.60s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: fs_extra v1.1.0, rustc-serialize v0.3.23
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "79a1a608bc96ac2cf5004999a9baeb42baed4d614465702e155c85e8f2797213", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "79a1a608bc96ac2cf5004999a9baeb42baed4d614465702e155c85e8f2797213", kill_on_drop: false }`
[INFO] [stdout] 79a1a608bc96ac2cf5004999a9baeb42baed4d614465702e155c85e8f2797213
[INFO] checking guertinlab/seqOutBias against try#08b2c37c39cf0d12f78ab70b2b8811ea41390c90 for pr-117593-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fguertinlab%2FseqOutBias" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/guertinlab/seqOutBias on toolchain 08b2c37c39cf0d12f78ab70b2b8811ea41390c90
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+08b2c37c39cf0d12f78ab70b2b8811ea41390c90" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/guertinlab/seqOutBias
[INFO] finished tweaking git repo https://github.com/guertinlab/seqOutBias
[INFO] tweaked toml for git repo https://github.com/guertinlab/seqOutBias written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/guertinlab/seqOutBias already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+08b2c37c39cf0d12f78ab70b2b8811ea41390c90" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+08b2c37c39cf0d12f78ab70b2b8811ea41390c90" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 676ff1cc8755da8aea87a62ef416fcb9956843f7d171b9936d46b56f9ba6279c
[INFO] running `Command { std: "docker" "start" "-a" "676ff1cc8755da8aea87a62ef416fcb9956843f7d171b9936d46b56f9ba6279c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "676ff1cc8755da8aea87a62ef416fcb9956843f7d171b9936d46b56f9ba6279c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "676ff1cc8755da8aea87a62ef416fcb9956843f7d171b9936d46b56f9ba6279c", kill_on_drop: false }`
[INFO] [stdout] 676ff1cc8755da8aea87a62ef416fcb9956843f7d171b9936d46b56f9ba6279c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+08b2c37c39cf0d12f78ab70b2b8811ea41390c90" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 7c0682563dfd9cd90ceefc6222adc3c8a0f9d6b77014a6d19c259353df0ffe5a
[INFO] running `Command { std: "docker" "start" "-a" "7c0682563dfd9cd90ceefc6222adc3c8a0f9d6b77014a6d19c259353df0ffe5a", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.26
[INFO] [stderr]    Compiling libc v0.2.92
[INFO] [stderr]    Compiling syn v1.0.68
[INFO] [stderr]    Compiling unicode-xid v0.2.1
[INFO] [stderr]    Compiling ident_case v1.0.1
[INFO] [stderr]    Compiling winapi-build v0.1.1
[INFO] [stderr]    Compiling serde_derive v1.0.125
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling strsim v0.10.0
[INFO] [stderr]    Compiling fnv v1.0.7
[INFO] [stderr]    Compiling serde v1.0.125
[INFO] [stderr]    Compiling version_check v0.1.5
[INFO] [stderr]     Checking winapi v0.2.8
[INFO] [stderr]    Compiling gcc v0.3.45
[INFO] [stderr]     Checking matches v0.1.6
[INFO] [stderr]     Checking cfg-if v0.1.6
[INFO] [stderr]     Checking unicode-normalization v0.1.5
[INFO] [stderr]     Checking unicode-bidi v0.3.4
[INFO] [stderr]    Compiling ryu v0.2.7
[INFO] [stderr]    Compiling num-traits v0.2.6
[INFO] [stderr]    Compiling kernel32-sys v0.2.2
[INFO] [stderr]     Checking ucd-util v0.1.3
[INFO] [stderr]     Checking either v1.1.0
[INFO] [stderr]    Compiling rust-htslib v0.12.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking utf8-ranges v0.1.3
[INFO] [stderr]     Checking lazy_static v1.2.0
[INFO] [stderr]     Checking percent-encoding v1.0.0
[INFO] [stderr]    Compiling memchr v2.1.1
[INFO] [stderr]     Checking regex-syntax v0.3.9
[INFO] [stderr]     Checking lazy_static v0.2.6
[INFO] [stderr]     Checking rustc-serialize v0.3.23
[INFO] [stderr]    Compiling regex v1.0.6
[INFO] [stderr]     Checking thread_local v0.3.6
[INFO] [stderr]     Checking regex-syntax v0.6.3
[INFO] [stderr]     Checking itertools v0.6.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling seqOutBias v1.4.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Checking idna v0.1.2
[INFO] [stderr]     Checking serde v0.7.15
[INFO] [stderr]     Checking quick-error v1.2.0
[INFO] [stderr]     Checking itoa v0.4.3
[INFO] [stderr]    Compiling escargot v0.2.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]    Compiling miniz-sys v0.1.9
[INFO] [stderr]     Checking num-traits v0.1.37
[INFO] [stderr]     Checking byteorder v0.5.3
[INFO] [stderr]     Checking ieee754 v0.2.2
[INFO] [stderr]     Checking bitflags v0.9.1
[INFO] [stderr]     Checking utf8-ranges v1.0.2
[INFO] [stderr]     Checking strsim v0.5.2
[INFO] [stderr]     Checking difference v2.0.0
[INFO] [stderr]     Checking remove_dir_all v0.5.1
[INFO] [stderr]     Checking fs_extra v1.1.0
[INFO] [stderr]    Compiling quote v1.0.9
[INFO] [stderr]     Checking url v1.7.2
[INFO] [stderr]     Checking rand v0.4.3
[INFO] [stderr]     Checking thread-id v2.0.0
[INFO] [stderr]     Checking memchr v0.1.11
[INFO] [stderr]     Checking float-cmp v0.4.0
[INFO] [stderr]     Checking thread_local v0.2.7
[INFO] [stderr]     Checking aho-corasick v0.5.3
[INFO] [stderr]     Checking flate2 v0.2.18
[INFO] [stderr]     Checking aho-corasick v0.6.9
[INFO] [stderr]     Checking regex v0.1.80
[INFO] [stderr]     Checking rand v0.3.22
[INFO] [stderr]     Checking tempdir v0.3.7
[INFO] [stderr]     Checking tempfile v2.2.0
[INFO] [stderr]     Checking bincode v0.5.9
[INFO] [stderr]     Checking docopt v0.6.86
[INFO] [stderr]     Checking predicates v0.5.2
[INFO] [stderr]     Checking darling_core v0.12.2
[INFO] [stderr]    Compiling darling_macro v0.12.2
[INFO] [stderr]    Compiling darling v0.12.2
[INFO] [stderr]    Compiling profile v1.0.0 (/opt/rustwide/workdir/profile)
[INFO] [stderr]     Checking toml v0.5.8
[INFO] [stderr]     Checking serde_json v1.0.33
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/tallyread.rs:75:9
[INFO] [stdout]    |
[INFO] [stdout] 75 |         try!(result.read_sequence_data());
[INFO] [stdout]    |         ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/tallyread.rs:103:40
[INFO] [stdout]     |
[INFO] [stdout] 103 |             let (seq, pos, is_minus) = try!(parse_line(&self.line));
[INFO] [stdout]     |                                        ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/tallyread.rs:138:9
[INFO] [stdout]     |
[INFO] [stdout] 138 |         try!(self.read_sequence_data());
[INFO] [stdout]     |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported
[INFO] [stdout]   --> src/seqtable/write.rs:18:17
[INFO] [stdout]    |
[INFO] [stdout] 18 | #[derive(Debug, RustcEncodable, RustcDecodable, PartialEq)]
[INFO] [stdout]    |                 ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported
[INFO] [stdout]   --> src/seqtable/write.rs:18:33
[INFO] [stdout]    |
[INFO] [stdout] 18 | #[derive(Debug, RustcEncodable, RustcDecodable, PartialEq)]
[INFO] [stdout]    |                                 ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported
[INFO] [stdout]   --> src/seqtable/write.rs:25:17
[INFO] [stdout]    |
[INFO] [stdout] 25 | #[derive(Debug, RustcEncodable, RustcDecodable, PartialEq)]
[INFO] [stdout]    |                 ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported
[INFO] [stdout]   --> src/seqtable/write.rs:25:33
[INFO] [stdout]    |
[INFO] [stdout] 25 | #[derive(Debug, RustcEncodable, RustcDecodable, PartialEq)]
[INFO] [stdout]    |                                 ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:47:9
[INFO] [stdout]    |
[INFO] [stdout] 47 |         try!(writer.write_u8(super::TBL_VERSION));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:49:9
[INFO] [stdout]    |
[INFO] [stdout] 49 |         try!(writer.write_u8(params.kmer_length));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:50:9
[INFO] [stdout]    |
[INFO] [stdout] 50 |         try!(writer.write_u8(params.unmasked_count));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:52:9
[INFO] [stdout]    |
[INFO] [stdout] 52 |         try!(writer.write_u8(params.plus_offset));  
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:53:9
[INFO] [stdout]    |
[INFO] [stdout] 53 |         try!(writer.write_u8(params.minus_offset));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:54:9
[INFO] [stdout]    |
[INFO] [stdout] 54 |         try!(writer.write_u16::<LittleEndian>(params.read_length));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:55:9
[INFO] [stdout]    |
[INFO] [stdout] 55 |         try!(writer.write_u8( if params.strand_specific { 1u8 } else { 0u8 }));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:68:9
[INFO] [stdout]    |
[INFO] [stdout] 68 |         try!(writer.write_u32::<LittleEndian>(blen));        
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:71:9
[INFO] [stdout]    |
[INFO] [stdout] 71 |         try!(writer.write_u64::<LittleEndian>(0));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:73:9
[INFO] [stdout]    |
[INFO] [stdout] 73 |         try!(writer.write_u64::<LittleEndian>(0));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:75:9
[INFO] [stdout]    |
[INFO] [stdout] 75 |         try!(writer.write_u64::<LittleEndian>(0));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:60:21
[INFO] [stdout]    |
[INFO] [stdout] 60 |                     try!(writer.write_u8(1));
[INFO] [stdout]    |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:62:21
[INFO] [stdout]    |
[INFO] [stdout] 62 |                     try!(writer.write_u8(0));
[INFO] [stdout]    |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/seqtable/write.rs:169:9
[INFO] [stdout]     |
[INFO] [stdout] 169 |         try!(self.writer.write(&self.output[0..(total as usize)]));
[INFO] [stdout]     |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:37:9
[INFO] [stdout]    |
[INFO] [stdout] 37 |         try!(reader.seek(SeekFrom::Start(0)));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:84:9
[INFO] [stdout]    |
[INFO] [stdout] 84 |         try!(reader.seek(SeekFrom::Start(offset)));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:39:23
[INFO] [stdout]    |
[INFO] [stdout] 39 |         let version = try!(reader.read_u8());
[INFO] [stdout]    |                       ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:44:18
[INFO] [stdout]    |
[INFO] [stdout] 44 |         let cl = try!(reader.read_u8());
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:45:18
[INFO] [stdout]    |
[INFO] [stdout] 45 |         let uc = try!(reader.read_u8());
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:46:18
[INFO] [stdout]    |
[INFO] [stdout] 46 |         let po = try!(reader.read_u8());
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:47:18
[INFO] [stdout]    |
[INFO] [stdout] 47 |         let mo = try!(reader.read_u8());
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:48:18
[INFO] [stdout]    |
[INFO] [stdout] 48 |         let rl = try!(reader.read_u16::<LittleEndian>());
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:49:18
[INFO] [stdout]    |
[INFO] [stdout] 49 |         let ss = try!(reader.read_u8()) == 1;
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:54:28
[INFO] [stdout]    |
[INFO] [stdout] 54 |                 let flag = try!(reader.read_u8());
[INFO] [stdout]    |                            ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:73:20
[INFO] [stdout]    |
[INFO] [stdout] 73 |         let blen = try!(reader.read_u32::<LittleEndian>());
[INFO] [stdout]    |                    ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:75:22
[INFO] [stdout]    |
[INFO] [stdout] 75 |         let offset = try!(reader.read_u64::<LittleEndian>());
[INFO] [stdout]    |                      ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:77:23
[INFO] [stdout]    |
[INFO] [stdout] 77 |         let bufsize = try!(reader.read_u64::<LittleEndian>()) as usize;
[INFO] [stdout]    |                       ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:79:29
[INFO] [stdout]    |
[INFO] [stdout] 79 |         let counts_offset = try!(reader.read_u64::<LittleEndian>());
[INFO] [stdout]    |                             ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/seqtable/read.rs:104:25
[INFO] [stdout]     |
[INFO] [stdout] 104 |                         try!(self.reader.seek(SeekFrom::Start(block.offset)));
[INFO] [stdout]     |                         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/seqtable/read.rs:129:21
[INFO] [stdout]     |
[INFO] [stdout] 129 |                     try!(self.reader.seek(SeekFrom::Start(block.offset)));
[INFO] [stdout]     |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/seqtable/read.rs:163:9
[INFO] [stdout]     |
[INFO] [stdout] 163 |         try!(self.reader.seek(SeekFrom::Start(self.counts_offset)));
[INFO] [stdout]     |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/seqtable/read.rs:200:9
[INFO] [stdout]     |
[INFO] [stdout] 200 |         try!(self.reader.seek(SeekFrom::Start(block_info.offset)));
[INFO] [stdout]     |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/seqtable/read.rs:201:9
[INFO] [stdout]     |
[INFO] [stdout] 201 |         try!(self.reader.read(buf));
[INFO] [stdout]     |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/seqtable/read.rs:228:31
[INFO] [stdout]     |
[INFO] [stdout] 228 |                     let aux = try!(self.read_block(block_info));
[INFO] [stdout]     |                               ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::VecDeque`
[INFO] [stdout]  --> src/fasta.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 | use std::collections::VecDeque;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around assigned value
[INFO] [stdout]   --> src/fasta/context/simple.rs:39:43
[INFO] [stdout]    |
[INFO] [stdout] 39 |                     self.rev_dna_value -= ( 3 - head as u64);
[INFO] [stdout]    |                                           ^^               ^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_parens)]` on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 39 -                     self.rev_dna_value -= ( 3 - head as u64);
[INFO] [stdout] 39 +                     self.rev_dna_value -= 3 - head as u64;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/counts.rs:100:16
[INFO] [stdout]     |
[INFO] [stdout] 100 |     let file = try!(File::open(filename));
[INFO] [stdout]     |                ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/counts.rs:111:18
[INFO] [stdout]     |
[INFO] [stdout] 111 |       let line = try!(res);
[INFO] [stdout]     |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:22:17
[INFO] [stdout]    |
[INFO] [stdout] 22 |     let mut f = try!(File::create(filename));
[INFO] [stdout]    |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:25:9
[INFO] [stdout]    |
[INFO] [stdout] 25 |         try!(write!(f, "{}\t{}\n", chroms[index], chrom_sizes[index]));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:33:17
[INFO] [stdout]    |
[INFO] [stdout] 33 |     let mut f = try!(File::create(filename));
[INFO] [stdout]    |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:39:9
[INFO] [stdout]    |
[INFO] [stdout] 39 |         try!(write!(f, "variableStep chrom={}\n", chrom));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:45:53
[INFO] [stdout]    |
[INFO] [stdout] 45 |                 Strand::Plus => if value.0 > 0f64 { try!(write!(f, "{}\t{}\n", pos, value.0)) },
[INFO] [stdout]    |                                                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:46:54
[INFO] [stdout]    |
[INFO] [stdout] 46 |                 Strand::Minus => if value.1 > 0f64 { try!(write!(f, "{}\t{}\n", pos, -value.1)) },
[INFO] [stdout]    |                                                      ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:47:33
[INFO] [stdout]    |
[INFO] [stdout] 47 |                 Strand::Both => try!(write!(f, "{}\t{}\n", pos, value.0 + value.1)),
[INFO] [stdout]    |                                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:78:9
[INFO] [stdout]    |
[INFO] [stdout] 78 |         try!(write_chrom_info(chrominfo_name, chroms, chrom_sizes));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:83:9
[INFO] [stdout]    |
[INFO] [stdout] 83 |         try!(write_wiggle(wiggle_name, chroms, counts, strand));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/scale.rs:115:21
[INFO] [stdout]     |
[INFO] [stdout] 115 |         let mut f = try!(File::create(filename.filename()));
[INFO] [stdout]     |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/scale.rs:125:25
[INFO] [stdout]     |
[INFO] [stdout] 125 |                         try!(write!(f, "{}\t{}\t{}\t.\t{}\t+\n", chrom, pos, pos + 1, value.0));
[INFO] [stdout]     |                         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/scale.rs:129:29
[INFO] [stdout]     |
[INFO] [stdout] 129 | ...                   try!(write!(f, "{}\t{}\t{}\t.\t{}\t-\n", chrom, pos, pos + 1, value.1));
[INFO] [stdout]     |                       ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/scale.rs:131:29
[INFO] [stdout]     |
[INFO] [stdout] 131 | ...                   try!(write!(f, "{}\t{}\t{}\t.\t{}\t-\n", chrom, pos, pos + 1, -value.1));
[INFO] [stdout]     |                       ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/scale.rs:135:21
[INFO] [stdout]     |
[INFO] [stdout] 135 |                     try!(write!(f, "{}\t{}\t{}\t.\t{}\n", chrom, pos, pos + 1, value.0 + value.1));
[INFO] [stdout]     |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/scale.rs:167:21
[INFO] [stdout]     |
[INFO] [stdout] 167 |                     try!(write_bigwig(&output_minus.filename(), &self.chroms, &self.chrom_sizes, &self.counts, Strand::Minus));
[INFO] [stdout]     |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/scale.rs:173:13
[INFO] [stdout]     |
[INFO] [stdout] 173 |             try!(write_bigwig(&filename.filename(), &self.chroms, &self.chrom_sizes, &self.counts, Strand::Both));
[INFO] [stdout]     |             ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]   --> src/seqtable/mod.rs:74:86
[INFO] [stdout]    |
[INFO] [stdout] 74 |         println!("Error: Failed to open sequence table file '{}': {}", filename, err.description());
[INFO] [stdout]    |                                                                                      ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Checking assert_cmd v0.4.0
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]   --> src/seqtable/dump.rs:53:90
[INFO] [stdout]    |
[INFO] [stdout] 53 |             println!("Error: failed to open sequence table file '{}': {}", filename, err.description());
[INFO] [stdout]    |                                                                                          ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]   --> src/seqtable/dump.rs:95:90
[INFO] [stdout]    |
[INFO] [stdout] 95 |             println!("Error: failed to open sequence table file '{}': {}", filename, err.description());
[INFO] [stdout]    |                                                                                          ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/counts.rs:253:75
[INFO] [stdout]     |
[INFO] [stdout] 253 |             println!("Error: Failed to read BED file {}: {}", filename, e.description()); 
[INFO] [stdout]     |                                                                           ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/counts.rs:294:78
[INFO] [stdout]     |
[INFO] [stdout] 294 |             println!("Error: Failed to open BAM '{}': {}", &bamfilename, err.description());
[INFO] [stdout]     |                                                                              ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/counts.rs:354:89
[INFO] [stdout]     |
[INFO] [stdout] 354 |             println!("Error: Failed to open sequence table file '{}': {}", seqfile, err.description());
[INFO] [stdout]     |                                                                                         ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/scale.rs:223:89
[INFO] [stdout]     |
[INFO] [stdout] 223 |             println!("Error: Failed to open sequence table file '{}': {}", seqfile, err.description());
[INFO] [stdout]     |                                                                                         ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/scale.rs:261:82
[INFO] [stdout]     |
[INFO] [stdout] 261 |                 println!("Error: Failed to open BAM file '{}': {}", bamfile, err.description());
[INFO] [stdout]     |                                                                                  ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `is_minus`
[INFO] [stdout]   --> src/tallyread.rs:80:57
[INFO] [stdout]    |
[INFO] [stdout] 80 |     fn insert_value(map: &mut Vec<UnMapCell>, pos: u32, is_minus: bool) {
[INFO] [stdout]    |                                                         ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_is_minus`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function `bw_stranded_filename` is never used
[INFO] [stdout]    --> src/scale.rs:142:8
[INFO] [stdout]     |
[INFO] [stdout] 37  | impl PileUp {
[INFO] [stdout]     | ----------- associated function in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 142 |     fn bw_stranded_filename(filename: &str, strand: Strand) -> OsString {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused return value of `Box::<T>::from_raw` that must be used
[INFO] [stdout]   --> src/c_api.rs:86:12
[INFO] [stdout]    |
[INFO] [stdout] 86 |   unsafe { Box::from_raw(ptr); }
[INFO] [stdout]    |            ^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: call `drop(Box::from_raw(ptr))` if you intend to drop the `Box`
[INFO] [stdout]    = note: `#[warn(unused_must_use)]` on by default
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]    |
[INFO] [stdout] 86 |   unsafe { let _ = Box::from_raw(ptr); }
[INFO] [stdout]    |            +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused return value of `Box::<T>::from_raw` that must be used
[INFO] [stdout]    --> src/c_api.rs:267:12
[INFO] [stdout]     |
[INFO] [stdout] 267 |   unsafe { Box::from_raw(ptr); }
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: call `drop(Box::from_raw(ptr))` if you intend to drop the `Box`
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]     |
[INFO] [stdout] 267 |   unsafe { let _ = Box::from_raw(ptr); }
[INFO] [stdout]     |            +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 73 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/tallyread.rs:75:9
[INFO] [stdout]    |
[INFO] [stdout] 75 |         try!(result.read_sequence_data());
[INFO] [stdout]    |         ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/tallyread.rs:103:40
[INFO] [stdout]     |
[INFO] [stdout] 103 |             let (seq, pos, is_minus) = try!(parse_line(&self.line));
[INFO] [stdout]     |                                        ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/tallyread.rs:138:9
[INFO] [stdout]     |
[INFO] [stdout] 138 |         try!(self.read_sequence_data());
[INFO] [stdout]     |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported
[INFO] [stdout]   --> src/seqtable/write.rs:18:17
[INFO] [stdout]    |
[INFO] [stdout] 18 | #[derive(Debug, RustcEncodable, RustcDecodable, PartialEq)]
[INFO] [stdout]    |                 ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported
[INFO] [stdout]   --> src/seqtable/write.rs:18:33
[INFO] [stdout]    |
[INFO] [stdout] 18 | #[derive(Debug, RustcEncodable, RustcDecodable, PartialEq)]
[INFO] [stdout]    |                                 ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `RustcEncodable`: rustc-serialize is deprecated and no longer supported
[INFO] [stdout]   --> src/seqtable/write.rs:25:17
[INFO] [stdout]    |
[INFO] [stdout] 25 | #[derive(Debug, RustcEncodable, RustcDecodable, PartialEq)]
[INFO] [stdout]    |                 ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported
[INFO] [stdout]   --> src/seqtable/write.rs:25:33
[INFO] [stdout]    |
[INFO] [stdout] 25 | #[derive(Debug, RustcEncodable, RustcDecodable, PartialEq)]
[INFO] [stdout]    |                                 ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:47:9
[INFO] [stdout]    |
[INFO] [stdout] 47 |         try!(writer.write_u8(super::TBL_VERSION));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:49:9
[INFO] [stdout]    |
[INFO] [stdout] 49 |         try!(writer.write_u8(params.kmer_length));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:50:9
[INFO] [stdout]    |
[INFO] [stdout] 50 |         try!(writer.write_u8(params.unmasked_count));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:52:9
[INFO] [stdout]    |
[INFO] [stdout] 52 |         try!(writer.write_u8(params.plus_offset));  
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:53:9
[INFO] [stdout]    |
[INFO] [stdout] 53 |         try!(writer.write_u8(params.minus_offset));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:54:9
[INFO] [stdout]    |
[INFO] [stdout] 54 |         try!(writer.write_u16::<LittleEndian>(params.read_length));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:55:9
[INFO] [stdout]    |
[INFO] [stdout] 55 |         try!(writer.write_u8( if params.strand_specific { 1u8 } else { 0u8 }));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:68:9
[INFO] [stdout]    |
[INFO] [stdout] 68 |         try!(writer.write_u32::<LittleEndian>(blen));        
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:71:9
[INFO] [stdout]    |
[INFO] [stdout] 71 |         try!(writer.write_u64::<LittleEndian>(0));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:73:9
[INFO] [stdout]    |
[INFO] [stdout] 73 |         try!(writer.write_u64::<LittleEndian>(0));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:75:9
[INFO] [stdout]    |
[INFO] [stdout] 75 |         try!(writer.write_u64::<LittleEndian>(0));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:60:21
[INFO] [stdout]    |
[INFO] [stdout] 60 |                     try!(writer.write_u8(1));
[INFO] [stdout]    |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/write.rs:62:21
[INFO] [stdout]    |
[INFO] [stdout] 62 |                     try!(writer.write_u8(0));
[INFO] [stdout]    |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/seqtable/write.rs:169:9
[INFO] [stdout]     |
[INFO] [stdout] 169 |         try!(self.writer.write(&self.output[0..(total as usize)]));
[INFO] [stdout]     |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:37:9
[INFO] [stdout]    |
[INFO] [stdout] 37 |         try!(reader.seek(SeekFrom::Start(0)));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:84:9
[INFO] [stdout]    |
[INFO] [stdout] 84 |         try!(reader.seek(SeekFrom::Start(offset)));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:39:23
[INFO] [stdout]    |
[INFO] [stdout] 39 |         let version = try!(reader.read_u8());
[INFO] [stdout]    |                       ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:44:18
[INFO] [stdout]    |
[INFO] [stdout] 44 |         let cl = try!(reader.read_u8());
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:45:18
[INFO] [stdout]    |
[INFO] [stdout] 45 |         let uc = try!(reader.read_u8());
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:46:18
[INFO] [stdout]    |
[INFO] [stdout] 46 |         let po = try!(reader.read_u8());
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:47:18
[INFO] [stdout]    |
[INFO] [stdout] 47 |         let mo = try!(reader.read_u8());
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:48:18
[INFO] [stdout]    |
[INFO] [stdout] 48 |         let rl = try!(reader.read_u16::<LittleEndian>());
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:49:18
[INFO] [stdout]    |
[INFO] [stdout] 49 |         let ss = try!(reader.read_u8()) == 1;
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:54:28
[INFO] [stdout]    |
[INFO] [stdout] 54 |                 let flag = try!(reader.read_u8());
[INFO] [stdout]    |                            ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:73:20
[INFO] [stdout]    |
[INFO] [stdout] 73 |         let blen = try!(reader.read_u32::<LittleEndian>());
[INFO] [stdout]    |                    ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:75:22
[INFO] [stdout]    |
[INFO] [stdout] 75 |         let offset = try!(reader.read_u64::<LittleEndian>());
[INFO] [stdout]    |                      ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:77:23
[INFO] [stdout]    |
[INFO] [stdout] 77 |         let bufsize = try!(reader.read_u64::<LittleEndian>()) as usize;
[INFO] [stdout]    |                       ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/seqtable/read.rs:79:29
[INFO] [stdout]    |
[INFO] [stdout] 79 |         let counts_offset = try!(reader.read_u64::<LittleEndian>());
[INFO] [stdout]    |                             ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/seqtable/read.rs:104:25
[INFO] [stdout]     |
[INFO] [stdout] 104 |                         try!(self.reader.seek(SeekFrom::Start(block.offset)));
[INFO] [stdout]     |                         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/seqtable/read.rs:129:21
[INFO] [stdout]     |
[INFO] [stdout] 129 |                     try!(self.reader.seek(SeekFrom::Start(block.offset)));
[INFO] [stdout]     |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/seqtable/read.rs:163:9
[INFO] [stdout]     |
[INFO] [stdout] 163 |         try!(self.reader.seek(SeekFrom::Start(self.counts_offset)));
[INFO] [stdout]     |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/seqtable/read.rs:200:9
[INFO] [stdout]     |
[INFO] [stdout] 200 |         try!(self.reader.seek(SeekFrom::Start(block_info.offset)));
[INFO] [stdout]     |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/seqtable/read.rs:201:9
[INFO] [stdout]     |
[INFO] [stdout] 201 |         try!(self.reader.read(buf));
[INFO] [stdout]     |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/seqtable/read.rs:228:31
[INFO] [stdout]     |
[INFO] [stdout] 228 |                     let aux = try!(self.read_block(block_info));
[INFO] [stdout]     |                               ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::VecDeque`
[INFO] [stdout]  --> src/fasta.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 | use std::collections::VecDeque;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around assigned value
[INFO] [stdout]   --> src/fasta/context/simple.rs:39:43
[INFO] [stdout]    |
[INFO] [stdout] 39 |                     self.rev_dna_value -= ( 3 - head as u64);
[INFO] [stdout]    |                                           ^^               ^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_parens)]` on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 39 -                     self.rev_dna_value -= ( 3 - head as u64);
[INFO] [stdout] 39 +                     self.rev_dna_value -= 3 - head as u64;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/counts.rs:100:16
[INFO] [stdout]     |
[INFO] [stdout] 100 |     let file = try!(File::open(filename));
[INFO] [stdout]     |                ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/counts.rs:111:18
[INFO] [stdout]     |
[INFO] [stdout] 111 |       let line = try!(res);
[INFO] [stdout]     |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:22:17
[INFO] [stdout]    |
[INFO] [stdout] 22 |     let mut f = try!(File::create(filename));
[INFO] [stdout]    |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:25:9
[INFO] [stdout]    |
[INFO] [stdout] 25 |         try!(write!(f, "{}\t{}\n", chroms[index], chrom_sizes[index]));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:33:17
[INFO] [stdout]    |
[INFO] [stdout] 33 |     let mut f = try!(File::create(filename));
[INFO] [stdout]    |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:39:9
[INFO] [stdout]    |
[INFO] [stdout] 39 |         try!(write!(f, "variableStep chrom={}\n", chrom));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:45:53
[INFO] [stdout]    |
[INFO] [stdout] 45 |                 Strand::Plus => if value.0 > 0f64 { try!(write!(f, "{}\t{}\n", pos, value.0)) },
[INFO] [stdout]    |                                                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:46:54
[INFO] [stdout]    |
[INFO] [stdout] 46 |                 Strand::Minus => if value.1 > 0f64 { try!(write!(f, "{}\t{}\n", pos, -value.1)) },
[INFO] [stdout]    |                                                      ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:47:33
[INFO] [stdout]    |
[INFO] [stdout] 47 |                 Strand::Both => try!(write!(f, "{}\t{}\n", pos, value.0 + value.1)),
[INFO] [stdout]    |                                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:78:9
[INFO] [stdout]    |
[INFO] [stdout] 78 |         try!(write_chrom_info(chrominfo_name, chroms, chrom_sizes));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/bigwig.rs:83:9
[INFO] [stdout]    |
[INFO] [stdout] 83 |         try!(write_wiggle(wiggle_name, chroms, counts, strand));
[INFO] [stdout]    |         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/scale.rs:115:21
[INFO] [stdout]     |
[INFO] [stdout] 115 |         let mut f = try!(File::create(filename.filename()));
[INFO] [stdout]     |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/scale.rs:125:25
[INFO] [stdout]     |
[INFO] [stdout] 125 |                         try!(write!(f, "{}\t{}\t{}\t.\t{}\t+\n", chrom, pos, pos + 1, value.0));
[INFO] [stdout]     |                         ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/scale.rs:129:29
[INFO] [stdout]     |
[INFO] [stdout] 129 | ...                   try!(write!(f, "{}\t{}\t{}\t.\t{}\t-\n", chrom, pos, pos + 1, value.1));
[INFO] [stdout]     |                       ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/scale.rs:131:29
[INFO] [stdout]     |
[INFO] [stdout] 131 | ...                   try!(write!(f, "{}\t{}\t{}\t.\t{}\t-\n", chrom, pos, pos + 1, -value.1));
[INFO] [stdout]     |                       ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/scale.rs:135:21
[INFO] [stdout]     |
[INFO] [stdout] 135 |                     try!(write!(f, "{}\t{}\t{}\t.\t{}\n", chrom, pos, pos + 1, value.0 + value.1));
[INFO] [stdout]     |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/scale.rs:167:21
[INFO] [stdout]     |
[INFO] [stdout] 167 |                     try!(write_bigwig(&output_minus.filename(), &self.chroms, &self.chrom_sizes, &self.counts, Strand::Minus));
[INFO] [stdout]     |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/scale.rs:173:13
[INFO] [stdout]     |
[INFO] [stdout] 173 |             try!(write_bigwig(&filename.filename(), &self.chroms, &self.chrom_sizes, &self.counts, Strand::Both));
[INFO] [stdout]     |             ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `OsString`
[INFO] [stdout]   --> src/outputfile.rs:92:25
[INFO] [stdout]    |
[INFO] [stdout] 92 |   use std::ffi::{OsStr, OsString};
[INFO] [stdout]    |                         ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported
[INFO] [stdout]   --> src/main.rs:78:17
[INFO] [stdout]    |
[INFO] [stdout] 78 | #[derive(Debug, RustcDecodable, Profile)]
[INFO] [stdout]    |                 ^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported
[INFO] [stdout]   --> src/main.rs:78:17
[INFO] [stdout]    |
[INFO] [stdout] 78 | #[derive(Debug, RustcDecodable, Profile)]
[INFO] [stdout]    |                 ^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]   --> src/seqtable/mod.rs:74:86
[INFO] [stdout]    |
[INFO] [stdout] 74 |         println!("Error: Failed to open sequence table file '{}': {}", filename, err.description());
[INFO] [stdout]    |                                                                                      ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/main.rs:375:78
[INFO] [stdout]     |
[INFO] [stdout] 375 |                     Err(err) => println!("Error producing BED file: {}", err.description()),
[INFO] [stdout]     |                                                                              ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/main.rs:394:81
[INFO] [stdout]     |
[INFO] [stdout] 394 |                     Err(err) => println!("Error producing BigWig file: {}", err.description()),
[INFO] [stdout]     |                                                                                 ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]   --> src/seqtable/dump.rs:53:90
[INFO] [stdout]    |
[INFO] [stdout] 53 |             println!("Error: failed to open sequence table file '{}': {}", filename, err.description());
[INFO] [stdout]    |                                                                                          ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]   --> src/seqtable/dump.rs:95:90
[INFO] [stdout]    |
[INFO] [stdout] 95 |             println!("Error: failed to open sequence table file '{}': {}", filename, err.description());
[INFO] [stdout]    |                                                                                          ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/main.rs:375:78
[INFO] [stdout]     |
[INFO] [stdout] 375 |                     Err(err) => println!("Error producing BED file: {}", err.description()),
[INFO] [stdout]     |                                                                              ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/main.rs:394:81
[INFO] [stdout]     |
[INFO] [stdout] 394 |                     Err(err) => println!("Error producing BigWig file: {}", err.description()),
[INFO] [stdout]     |                                                                                 ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/counts.rs:253:75
[INFO] [stdout]     |
[INFO] [stdout] 253 |             println!("Error: Failed to read BED file {}: {}", filename, e.description()); 
[INFO] [stdout]     |                                                                           ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/counts.rs:294:78
[INFO] [stdout]     |
[INFO] [stdout] 294 |             println!("Error: Failed to open BAM '{}': {}", &bamfilename, err.description());
[INFO] [stdout]     |                                                                              ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 3 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/counts.rs:354:89
[INFO] [stdout]     |
[INFO] [stdout] 354 |             println!("Error: Failed to open sequence table file '{}': {}", seqfile, err.description());
[INFO] [stdout]     |                                                                                         ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 3 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/scale.rs:223:89
[INFO] [stdout]     |
[INFO] [stdout] 223 |             println!("Error: Failed to open sequence table file '{}': {}", seqfile, err.description());
[INFO] [stdout]     |                                                                                         ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/scale.rs:261:82
[INFO] [stdout]     |
[INFO] [stdout] 261 |                 println!("Error: Failed to open BAM file '{}': {}", bamfile, err.description());
[INFO] [stdout]     |                                                                                  ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `is_minus`
[INFO] [stdout]   --> src/tallyread.rs:80:57
[INFO] [stdout]    |
[INFO] [stdout] 80 |     fn insert_value(map: &mut Vec<UnMapCell>, pos: u32, is_minus: bool) {
[INFO] [stdout]    |                                                         ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_is_minus`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function `bw_stranded_filename` is never used
[INFO] [stdout]    --> src/scale.rs:142:8
[INFO] [stdout]     |
[INFO] [stdout] 37  | impl PileUp {
[INFO] [stdout]     | ----------- associated function in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 142 |     fn bw_stranded_filename(filename: &str, strand: Strand) -> OsString {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused return value of `Box::<T>::from_raw` that must be used
[INFO] [stdout]   --> src/c_api.rs:86:12
[INFO] [stdout]    |
[INFO] [stdout] 86 |   unsafe { Box::from_raw(ptr); }
[INFO] [stdout]    |            ^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: call `drop(Box::from_raw(ptr))` if you intend to drop the `Box`
[INFO] [stdout]    = note: `#[warn(unused_must_use)]` on by default
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]    |
[INFO] [stdout] 86 |   unsafe { let _ = Box::from_raw(ptr); }
[INFO] [stdout]    |            +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused return value of `Box::<T>::from_raw` that must be used
[INFO] [stdout]    --> src/c_api.rs:267:12
[INFO] [stdout]     |
[INFO] [stdout] 267 |   unsafe { Box::from_raw(ptr); }
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: call `drop(Box::from_raw(ptr))` if you intend to drop the `Box`
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]     |
[INFO] [stdout] 267 |   unsafe { let _ = Box::from_raw(ptr); }
[INFO] [stdout]     |            +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 74 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 21.38s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: fs_extra v1.1.0, rustc-serialize v0.3.23
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "7c0682563dfd9cd90ceefc6222adc3c8a0f9d6b77014a6d19c259353df0ffe5a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7c0682563dfd9cd90ceefc6222adc3c8a0f9d6b77014a6d19c259353df0ffe5a", kill_on_drop: false }`
[INFO] [stdout] 7c0682563dfd9cd90ceefc6222adc3c8a0f9d6b77014a6d19c259353df0ffe5a