[INFO] cloning repository https://github.com/TuBieJun/stat_mut_sampleratio [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/TuBieJun/stat_mut_sampleratio" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTuBieJun%2Fstat_mut_sampleratio", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTuBieJun%2Fstat_mut_sampleratio'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 0163827d32c94da365c78519e8ce537f7b7a211c [INFO] checking TuBieJun/stat_mut_sampleratio against master#5257aee7dd163d21d32fa904578d4fb0f4c91b79 for pr-116494-2 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTuBieJun%2Fstat_mut_sampleratio" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/TuBieJun/stat_mut_sampleratio on toolchain 5257aee7dd163d21d32fa904578d4fb0f4c91b79 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+5257aee7dd163d21d32fa904578d4fb0f4c91b79" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/TuBieJun/stat_mut_sampleratio [INFO] finished tweaking git repo https://github.com/TuBieJun/stat_mut_sampleratio [INFO] tweaked toml for git repo https://github.com/TuBieJun/stat_mut_sampleratio written to /workspace/builds/worker-3-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/TuBieJun/stat_mut_sampleratio already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+5257aee7dd163d21d32fa904578d4fb0f4c91b79" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition [INFO] [stderr] Blocking waiting for file lock on package cache [ERROR] error running command: no output for 300 seconds [ERROR] this task or one of its parent failed! [ERROR] no output for 300 seconds [ERROR] note: run with `RUST_BACKTRACE=1` to display a backtrace. [INFO] checking TuBieJun/stat_mut_sampleratio against try#d614ed876e31a5f3ad1d0fbf848fcdab3a29d1d8 for pr-116494-2 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTuBieJun%2Fstat_mut_sampleratio" "/workspace/builds/worker-3-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/TuBieJun/stat_mut_sampleratio on toolchain d614ed876e31a5f3ad1d0fbf848fcdab3a29d1d8 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d614ed876e31a5f3ad1d0fbf848fcdab3a29d1d8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/TuBieJun/stat_mut_sampleratio [INFO] finished tweaking git repo https://github.com/TuBieJun/stat_mut_sampleratio [INFO] tweaked toml for git repo https://github.com/TuBieJun/stat_mut_sampleratio written to /workspace/builds/worker-3-tc2/source/Cargo.toml [INFO] crate git repo https://github.com/TuBieJun/stat_mut_sampleratio already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d614ed876e31a5f3ad1d0fbf848fcdab3a29d1d8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+d614ed876e31a5f3ad1d0fbf848fcdab3a29d1d8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 6b9b4f23dc8b17f19205de4e5005ef3d560e0f54e8197985c60b3bd11b9e8e65 [INFO] running `Command { std: "docker" "start" "-a" "6b9b4f23dc8b17f19205de4e5005ef3d560e0f54e8197985c60b3bd11b9e8e65", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "6b9b4f23dc8b17f19205de4e5005ef3d560e0f54e8197985c60b3bd11b9e8e65", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6b9b4f23dc8b17f19205de4e5005ef3d560e0f54e8197985c60b3bd11b9e8e65", kill_on_drop: false }` [INFO] [stdout] 6b9b4f23dc8b17f19205de4e5005ef3d560e0f54e8197985c60b3bd11b9e8e65 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+d614ed876e31a5f3ad1d0fbf848fcdab3a29d1d8" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 061574484af255e76b567ebf4fcafe99a6d5e2dbce95572d229c78bd23a15d36 [INFO] running `Command { std: "docker" "start" "-a" "061574484af255e76b567ebf4fcafe99a6d5e2dbce95572d229c78bd23a15d36", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition [INFO] [stderr] Checking unicode-width v0.1.4 [INFO] [stderr] Checking atty v0.2.6 [INFO] [stderr] Checking vec_map v0.8.0 [INFO] [stderr] Checking ansi_term v0.10.2 [INFO] [stderr] Checking bitflags v1.0.1 [INFO] [stderr] Checking strsim v0.6.0 [INFO] [stderr] Checking textwrap v0.9.0 [INFO] [stderr] Checking clap v2.29.2 [INFO] [stderr] Checking stat_germline_pos v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `SubCommand` [INFO] [stdout] --> src/main.rs:9:22 [INFO] [stdout] | [INFO] [stdout] 9 | use clap::{Arg, App, SubCommand}; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `SubCommand` [INFO] [stdout] --> src/main.rs:9:22 [INFO] [stdout] | [INFO] [stdout] 9 | use clap::{Arg, App, SubCommand}; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:18:9 [INFO] [stdout] | [INFO] [stdout] 18 | let mut f = File::open(vcf_l) [INFO] [stdout] | ----^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:40:21 [INFO] [stdout] | [INFO] [stdout] 40 | let mut dp_info:Vec<&str>; [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:58:25 [INFO] [stdout] | [INFO] [stdout] 58 | let mut n_index:usize; [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `D_germline` should have a snake case name [INFO] [stdout] --> src/main.rs:13:13 [INFO] [stdout] | [INFO] [stdout] 13 | D_germline:&mut HashMap>) -> u32 { [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `D_germline` should have a snake case name [INFO] [stdout] --> src/main.rs:96:53 [INFO] [stdout] | [INFO] [stdout] 96 | fn out_info(out_file:&str, panel_list:&Vec, D_germline:&HashMap>, sample_num_list:&Vec) { [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:100:5 [INFO] [stdout] | [INFO] [stdout] 100 | writer.write(header.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] help: use `let _ = ...` to ignore the resulting value [INFO] [stdout] | [INFO] [stdout] 100 | let _ = writer.write(header.as_bytes()); [INFO] [stdout] | +++++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:112:9 [INFO] [stdout] | [INFO] [stdout] 112 | writer.write(info.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] help: use `let _ = ...` to ignore the resulting value [INFO] [stdout] | [INFO] [stdout] 112 | let _ = writer.write(info.as_bytes()); [INFO] [stdout] | +++++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:18:9 [INFO] [stdout] | [INFO] [stdout] 18 | let mut f = File::open(vcf_l) [INFO] [stdout] | ----^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:40:21 [INFO] [stdout] | [INFO] [stdout] 40 | let mut dp_info:Vec<&str>; [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:58:25 [INFO] [stdout] | [INFO] [stdout] 58 | let mut n_index:usize; [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `D_germline` should have a snake case name [INFO] [stdout] --> src/main.rs:155:13 [INFO] [stdout] | [INFO] [stdout] 155 | let mut D_germline:HashMap> = HashMap::new(); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `D_germline` should have a snake case name [INFO] [stdout] --> src/main.rs:13:13 [INFO] [stdout] | [INFO] [stdout] 13 | D_germline:&mut HashMap>) -> u32 { [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `D_germline` should have a snake case name [INFO] [stdout] --> src/main.rs:96:53 [INFO] [stdout] | [INFO] [stdout] 96 | fn out_info(out_file:&str, panel_list:&Vec, D_germline:&HashMap>, sample_num_list:&Vec) { [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 9 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:100:5 [INFO] [stdout] | [INFO] [stdout] 100 | writer.write(header.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] help: use `let _ = ...` to ignore the resulting value [INFO] [stdout] | [INFO] [stdout] 100 | let _ = writer.write(header.as_bytes()); [INFO] [stdout] | +++++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:112:9 [INFO] [stdout] | [INFO] [stdout] 112 | writer.write(info.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] help: use `let _ = ...` to ignore the resulting value [INFO] [stdout] | [INFO] [stdout] 112 | let _ = writer.write(info.as_bytes()); [INFO] [stdout] | +++++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `D_germline` should have a snake case name [INFO] [stdout] --> src/main.rs:155:13 [INFO] [stdout] | [INFO] [stdout] 155 | let mut D_germline:HashMap> = HashMap::new(); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 9 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2.14s [INFO] running `Command { std: "docker" "inspect" "061574484af255e76b567ebf4fcafe99a6d5e2dbce95572d229c78bd23a15d36", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "061574484af255e76b567ebf4fcafe99a6d5e2dbce95572d229c78bd23a15d36", kill_on_drop: false }` [INFO] [stdout] 061574484af255e76b567ebf4fcafe99a6d5e2dbce95572d229c78bd23a15d36