[INFO] cloning repository https://github.com/ARGA-Genomes/arga-backend [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ARGA-Genomes/arga-backend" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARGA-Genomes%2Farga-backend", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARGA-Genomes%2Farga-backend'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] f11f6ffa9712cf6345513492227d881b6ebfea5c [INFO] checking ARGA-Genomes/arga-backend against try#47988eeabf6090a44f37845ce0a796693c491c97 for pr-115974 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARGA-Genomes%2Farga-backend" "/workspace/builds/worker-0-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/ARGA-Genomes/arga-backend on toolchain 47988eeabf6090a44f37845ce0a796693c491c97 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+47988eeabf6090a44f37845ce0a796693c491c97" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/ARGA-Genomes/arga-backend [INFO] finished tweaking git repo https://github.com/ARGA-Genomes/arga-backend [INFO] tweaked toml for git repo https://github.com/ARGA-Genomes/arga-backend written to /workspace/builds/worker-0-tc2/source/Cargo.toml [INFO] crate git repo https://github.com/ARGA-Genomes/arga-backend already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+47988eeabf6090a44f37845ce0a796693c491c97" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: virtual workspace defaulting to `resolver = "1"` despite one or more workspace members being on edition 2021 which implies `resolver = "2"` [INFO] [stderr] note: to keep the current resolver, specify `workspace.resolver = "1"` in the workspace root's manifest [INFO] [stderr] note: to use the edition 2021 resolver, specify `workspace.resolver = "2"` in the workspace root's manifest [INFO] [stderr] note: for more details see https://doc.rust-lang.org/cargo/reference/resolver.html#resolver-versions [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4f8da3c744d2da974e54ce020a79f4ad54313e914ebeaab8fc086f07e8d8b066" "/opt/rustwide/cargo-home/bin/cargo" "+47988eeabf6090a44f37845ce0a796693c491c97" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 7112e87170b78029d1f1f4c4771fb143a7e62957f55ffa2cdd7685ff37a74066 [INFO] running `Command { std: "docker" "start" "-a" "7112e87170b78029d1f1f4c4771fb143a7e62957f55ffa2cdd7685ff37a74066", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "7112e87170b78029d1f1f4c4771fb143a7e62957f55ffa2cdd7685ff37a74066", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7112e87170b78029d1f1f4c4771fb143a7e62957f55ffa2cdd7685ff37a74066", kill_on_drop: false }` [INFO] [stdout] 7112e87170b78029d1f1f4c4771fb143a7e62957f55ffa2cdd7685ff37a74066 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4f8da3c744d2da974e54ce020a79f4ad54313e914ebeaab8fc086f07e8d8b066" "/opt/rustwide/cargo-home/bin/cargo" "+47988eeabf6090a44f37845ce0a796693c491c97" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] af3a4ee02500686c043c68e56f302f95553b49d534023c6707e7ccc9a36f0123 [INFO] running `Command { std: "docker" "start" "-a" "af3a4ee02500686c043c68e56f302f95553b49d534023c6707e7ccc9a36f0123", kill_on_drop: false }` [INFO] [stderr] warning: virtual workspace defaulting to `resolver = "1"` despite one or more workspace members being on edition 2021 which implies `resolver = "2"` [INFO] [stderr] note: to keep the current resolver, specify `workspace.resolver = "1"` in the workspace root's manifest [INFO] [stderr] note: to use the edition 2021 resolver, specify `workspace.resolver = "2"` in the workspace root's manifest [INFO] [stderr] note: for more details see https://doc.rust-lang.org/cargo/reference/resolver.html#resolver-versions [INFO] [stderr] Compiling serde v1.0.181 [INFO] [stderr] Compiling serde_derive v1.0.181 [INFO] [stderr] Compiling futures-task v0.3.28 [INFO] [stderr] Checking getrandom v0.2.10 [INFO] [stderr] Checking parking_lot_core v0.9.8 [INFO] [stderr] Checking subtle v2.4.1 [INFO] [stderr] Compiling futures-util v0.3.28 [INFO] [stderr] Compiling syn v2.0.28 [INFO] [stderr] Checking generic-array v0.14.7 [INFO] [stderr] Compiling indexmap v1.9.3 [INFO] [stderr] Compiling serde_json v1.0.104 [INFO] [stderr] Checking tracing-core v0.1.31 [INFO] [stderr] Compiling tokio v1.29.1 [INFO] [stderr] Compiling async-trait v0.1.72 [INFO] [stderr] Compiling rustix v0.38.6 [INFO] [stderr] Compiling num-traits v0.2.16 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling crossbeam-utils v0.8.16 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Checking parking_lot v0.12.1 [INFO] [stderr] Checking ahash v0.7.6 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Compiling anyhow v1.0.72 [INFO] [stderr] Compiling cc v1.0.81 [INFO] [stderr] Checking base64 v0.21.2 [INFO] [stderr] Checking time v0.1.45 [INFO] [stderr] Checking linux-raw-sys v0.4.5 [INFO] [stderr] Checking iana-time-zone v0.1.57 [INFO] [stderr] Checking hashbrown v0.12.3 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Compiling rustversion v1.0.14 [INFO] [stderr] Checking regex-automata v0.3.6 [INFO] [stderr] Checking spin v0.9.8 [INFO] [stderr] Checking block-buffer v0.10.4 [INFO] [stderr] Checking crypto-common v0.1.6 [INFO] [stderr] Checking crossbeam-channel v0.5.8 [INFO] [stderr] Compiling crossbeam-epoch v0.9.15 [INFO] [stderr] Checking digest v0.10.7 [INFO] [stderr] Compiling time-core v0.1.1 [INFO] [stderr] Compiling time-macros v0.2.11 [INFO] [stderr] Checking either v1.9.0 [INFO] [stderr] Checking sha2 v0.10.7 [INFO] [stderr] Checking sha1 v0.10.5 [INFO] [stderr] Checking hmac v0.12.1 [INFO] [stderr] Compiling itertools v0.10.5 [INFO] [stderr] Checking encoding_rs v0.8.32 [INFO] [stderr] Compiling multer v2.1.0 [INFO] [stderr] Compiling rayon-core v1.11.0 [INFO] [stderr] Compiling pq-sys v0.4.8 [INFO] [stderr] Checking tower-layer v0.3.2 [INFO] [stderr] Checking crossbeam-deque v0.8.3 [INFO] [stderr] Checking scheduled-thread-pool v0.2.7 [INFO] [stderr] Compiling axum-core v0.3.4 [INFO] [stderr] Checking stable_deref_trait v1.2.0 [INFO] [stderr] Checking fastrand v2.0.0 [INFO] [stderr] Compiling ring v0.16.20 [INFO] [stderr] Checking utf-8 v0.7.6 [INFO] [stderr] Checking ownedbytes v0.4.0 [INFO] [stderr] Compiling crunchy v0.2.2 [INFO] [stderr] Checking r2d2 v0.8.10 [INFO] [stderr] Compiling axum v0.6.20 [INFO] [stderr] Checking tantivy-common v0.4.0 [INFO] [stderr] Checking combine v4.6.6 [INFO] [stderr] Checking instant v0.1.12 [INFO] [stderr] Checking sync_wrapper v0.1.2 [INFO] [stderr] Checking tantivy-bitpacker v0.3.0 [INFO] [stderr] Compiling bitflags v2.3.3 [INFO] [stderr] Checking fastdivide v0.4.0 [INFO] [stderr] Checking rayon v1.7.0 [INFO] [stderr] Checking matchit v0.7.2 [INFO] [stderr] Compiling prettyplease v0.1.25 [INFO] [stderr] Checking utf8-ranges v1.0.5 [INFO] [stderr] Checking tantivy-fst v0.4.0 [INFO] [stderr] Checking measure_time v0.8.2 [INFO] [stderr] Checking bitpacking v0.8.4 [INFO] [stderr] Checking regex v1.9.3 [INFO] [stderr] Checking fail v0.5.1 [INFO] [stderr] Checking tempfile v3.7.0 [INFO] [stderr] Checking lru v0.7.8 [INFO] [stderr] Checking md-5 v0.10.5 [INFO] [stderr] Checking stringprep v0.1.3 [INFO] [stderr] Checking murmurhash32 v0.2.0 [INFO] [stderr] Checking aho-corasick v0.7.20 [INFO] [stderr] Checking fs2 v0.4.3 [INFO] [stderr] Checking memmap2 v0.5.10 [INFO] [stderr] Checking levenshtein_automata v0.2.1 [INFO] [stderr] Compiling fixedbitset v0.4.2 [INFO] [stderr] Checking census v0.4.1 [INFO] [stderr] Checking downcast-rs v1.2.0 [INFO] [stderr] Checking oneshot v0.1.5 [INFO] [stderr] Checking htmlescape v0.3.1 [INFO] [stderr] Checking lz4_flex v0.9.5 [INFO] [stderr] Checking tracing-log v0.1.3 [INFO] [stderr] Checking fastfield_codecs v0.3.1 [INFO] [stderr] Compiling which v4.4.0 [INFO] [stderr] Checking digest v0.9.0 [INFO] [stderr] Compiling strsim v0.10.0 [INFO] [stderr] Compiling multimap v0.8.3 [INFO] [stderr] Checking bytes v1.4.0 [INFO] [stderr] Checking chrono v0.4.26 [INFO] [stderr] Checking uuid v1.4.1 [INFO] [stderr] Checking deranged v0.3.7 [INFO] [stderr] Checking serde_urlencoded v0.7.1 [INFO] [stderr] Checking http v0.2.9 [INFO] [stderr] Checking geo-types v0.7.11 [INFO] [stderr] Checking serde_path_to_error v0.1.14 [INFO] [stderr] Checking rust-stemmers v1.2.0 [INFO] [stderr] Checking postgres-protocol v0.6.5 [INFO] [stderr] Compiling petgraph v0.6.3 [INFO] [stderr] Checking hashbrown v0.14.0 [INFO] [stderr] Compiling ident_case v1.0.1 [INFO] [stderr] Checking phf_shared v0.11.2 [INFO] [stderr] Compiling blake3 v0.3.8 [INFO] [stderr] Checking http-body v0.4.5 [INFO] [stderr] Compiling diesel_table_macro_syntax v0.1.0 [INFO] [stderr] Checking time v0.3.25 [INFO] [stderr] Checking headers-core v0.2.0 [INFO] [stderr] Checking postgres-types v0.2.5 [INFO] [stderr] Checking headers v0.3.8 [INFO] [stderr] Compiling cookie v0.16.2 [INFO] [stderr] Compiling darling_core v0.14.4 [INFO] [stderr] Checking dashmap v5.5.0 [INFO] [stderr] Compiling rustls v0.21.6 [INFO] [stderr] Checking zeroize v1.6.0 [INFO] [stderr] Compiling winnow v0.5.3 [INFO] [stderr] Checking rustls-webpki v0.101.2 [INFO] [stderr] Checking sct v0.7.0 [INFO] [stderr] Checking phf v0.11.2 [INFO] [stderr] Checking crypto-mac v0.11.1 [INFO] [stderr] Checking block-buffer v0.9.0 [INFO] [stderr] Checking crypto-mac v0.8.0 [INFO] [stderr] Checking socket2 v0.5.3 [INFO] [stderr] Checking base64ct v1.6.0 [INFO] [stderr] Compiling async-graphql-value v5.0.10 [INFO] [stderr] Checking arrayref v0.3.7 [INFO] [stderr] Checking dotenvy v0.15.7 [INFO] [stderr] Checking constant_time_eq v0.1.5 [INFO] [stderr] Checking arrayvec v0.5.2 [INFO] [stderr] Checking http-range-header v0.3.1 [INFO] [stderr] Checking base64 v0.20.0 [INFO] [stderr] Checking sha2 v0.9.9 [INFO] [stderr] Checking password-hash v0.5.0 [INFO] [stderr] Checking hmac v0.11.0 [INFO] [stderr] Compiling Inflector v0.11.4 [INFO] [stderr] Checking bincode v1.3.3 [INFO] [stderr] Checking blake2 v0.10.6 [INFO] [stderr] Checking scoped-futures v0.1.3 [INFO] [stderr] Compiling eyre v0.6.8 [INFO] [stderr] Checking ascii_utils v0.9.3 [INFO] [stderr] Checking webpki v0.22.0 [INFO] [stderr] Checking fast_chemail v0.9.6 [INFO] [stderr] Checking indenter v0.3.3 [INFO] [stderr] Compiling geozero v0.9.9 [INFO] [stderr] Checking argon2 v0.5.1 [INFO] [stderr] Checking secrecy v0.8.0 [INFO] [stderr] Checking is-terminal v0.4.9 [INFO] [stderr] Checking rustls-pemfile v1.0.3 [INFO] [stderr] Checking webpki-roots v0.22.6 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Compiling portable-atomic v1.4.2 [INFO] [stderr] Checking scroll v0.11.0 [INFO] [stderr] Checking dyn-clone v1.0.12 [INFO] [stderr] Checking anstream v0.3.2 [INFO] [stderr] Checking latlon v0.1.3 [INFO] [stderr] Checking unicode-width v0.1.10 [INFO] [stderr] Checking console v0.15.7 [INFO] [stderr] Checking csv v1.2.2 [INFO] [stderr] Checking nanorand v0.7.0 [INFO] [stderr] Checking qcell v0.5.4 [INFO] [stderr] Checking clap_builder v4.3.21 [INFO] [stderr] Checking number_prefix v0.4.0 [INFO] [stderr] Checking itertools v0.11.0 [INFO] [stderr] Checking quick-xml v0.30.0 [INFO] [stderr] Checking memmap2 v0.7.1 [INFO] [stderr] Checking stakker v0.2.9 [INFO] [stderr] Checking tantivy-query-grammar v0.19.0 [INFO] [stderr] Compiling toml_edit v0.19.14 [INFO] [stderr] Compiling thiserror-impl v1.0.44 [INFO] [stderr] Compiling futures-macro v0.3.28 [INFO] [stderr] Compiling tracing-attributes v0.1.26 [INFO] [stderr] Compiling tokio-macros v2.1.0 [INFO] [stderr] Compiling pin-project-internal v1.1.2 [INFO] [stderr] Compiling diesel_derives v2.1.0 [INFO] [stderr] Compiling axum-macros v0.3.8 [INFO] [stderr] Compiling diesel-derive-enum v2.1.0 [INFO] [stderr] Compiling async-stream-impl v0.3.5 [INFO] [stderr] Compiling prost-derive v0.11.9 [INFO] [stderr] Compiling darling_macro v0.14.4 [INFO] [stderr] Compiling clap_derive v4.3.12 [INFO] [stderr] Checking indicatif v0.17.6 [INFO] [stderr] Checking async-stream v0.3.5 [INFO] [stderr] Compiling darling v0.14.4 [INFO] [stderr] Checking async-session v3.0.0 [INFO] [stderr] Checking thiserror v1.0.44 [INFO] [stderr] Compiling proc-macro-crate v1.3.1 [INFO] [stderr] Compiling pest v2.7.2 [INFO] [stderr] Checking tungstenite v0.20.0 [INFO] [stderr] Checking geojson v0.24.1 [INFO] [stderr] Checking tantivy v0.19.2 [INFO] [stderr] Checking pin-project v1.1.2 [INFO] [stderr] Checking wkt v0.10.3 [INFO] [stderr] Checking flume v0.10.14 [INFO] [stderr] Checking tracing v0.1.37 [INFO] [stderr] Checking tracing-subscriber v0.3.17 [INFO] [stderr] Compiling prost v0.11.9 [INFO] [stderr] Compiling prost-types v0.11.9 [INFO] [stderr] Checking clap v4.3.21 [INFO] [stderr] Compiling pest_meta v2.7.2 [INFO] [stderr] Compiling async-graphql-parser v5.0.10 [INFO] [stderr] Compiling prost-build v0.11.9 [INFO] [stderr] Compiling pest_generator v2.7.2 [INFO] [stderr] Compiling tonic-build v0.8.4 [INFO] [stderr] Compiling pest_derive v2.7.2 [INFO] [stderr] Checking futures-executor v0.3.28 [INFO] [stderr] Checking opentelemetry_api v0.18.0 [INFO] [stderr] Checking tower-http v0.3.5 [INFO] [stderr] Checking futures v0.3.28 [INFO] [stderr] Checking tracing-futures v0.2.5 [INFO] [stderr] Compiling opentelemetry-proto v0.1.0 [INFO] [stderr] Checking handlebars v4.3.7 [INFO] [stderr] Checking tokio-util v0.7.8 [INFO] [stderr] Checking tokio-tungstenite v0.20.0 [INFO] [stderr] Checking tokio-stream v0.1.14 [INFO] [stderr] Checking tokio-io-timeout v1.2.0 [INFO] [stderr] Checking bb8 v0.8.1 [INFO] [stderr] Checking tokio-rustls v0.24.1 [INFO] [stderr] Compiling async-graphql-derive v5.0.10 [INFO] [stderr] Checking diesel v2.1.0 [INFO] [stderr] Checking opentelemetry_sdk v0.18.0 [INFO] [stderr] Checking h2 v0.3.20 [INFO] [stderr] Checking tower v0.4.13 [INFO] [stderr] Checking tokio-postgres v0.7.8 [INFO] [stderr] Checking opentelemetry v0.18.0 [INFO] [stderr] Checking tracing-opentelemetry v0.18.0 [INFO] [stderr] Checking hyper v0.14.27 [INFO] [stderr] Checking async-graphql v5.0.10 [INFO] [stderr] Checking hyper-timeout v0.4.1 [INFO] [stderr] Checking hyper-rustls v0.24.1 [INFO] [stderr] Checking reqwest v0.11.18 [INFO] [stderr] Checking axum-extra v0.4.2 [INFO] [stderr] Checking tonic v0.8.3 [INFO] [stderr] Checking async-graphql-axum v5.0.10 [INFO] [stderr] Checking axum-sessions v0.4.1 [INFO] [stderr] Checking axum-login v0.4.1 [INFO] [stderr] Checking opentelemetry-otlp v0.11.0 [INFO] [stderr] Checking arga-core v0.1.0 (/opt/rustwide/workdir/core) [INFO] [stderr] Checking diesel-async v0.3.2 [INFO] [stderr] Checking arga-backend v0.1.0 (/opt/rustwide/workdir/server) [INFO] [stderr] Checking arga-tasks v0.1.0 (/opt/rustwide/workdir/tasks) [INFO] [stderr] Checking arga-workers v0.1.0 (/opt/rustwide/workdir/workers) [INFO] [stdout] warning: unused import: `error` [INFO] [stdout] --> tasks/src/data/ncbi/biosamples.rs:11:21 [INFO] [stdout] | [INFO] [stdout] 11 | use tracing::{info, error}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `NameMatch` [INFO] [stdout] --> tasks/src/data/ncbi/biosamples.rs:18:39 [INFO] [stdout] | [INFO] [stdout] 18 | use super::name_matcher::{NameRecord, NameMatch}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `error` [INFO] [stdout] --> tasks/src/data/ncbi/biosamples.rs:11:21 [INFO] [stdout] | [INFO] [stdout] 11 | use tracing::{info, error}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `NameMatch` [INFO] [stdout] --> tasks/src/data/ncbi/biosamples.rs:18:39 [INFO] [stdout] | [INFO] [stdout] 18 | use super::name_matcher::{NameRecord, NameMatch}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `conservation_status_importer` [INFO] [stdout] --> workers/src/threaded_job.rs:29:5 [INFO] [stdout] | [INFO] [stdout] 29 | conservation_status_importer, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `conservation_status_importer` [INFO] [stdout] --> workers/src/threaded_job.rs:29:5 [INFO] [stdout] | [INFO] [stdout] 29 | conservation_status_importer, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `input` [INFO] [stdout] --> tasks/src/data/ncbi/biosamples.rs:272:15 [INFO] [stdout] | [INFO] [stdout] 272 | pub fn import(input: PathBuf) -> Result<(), Error> { [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_input` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `input` [INFO] [stdout] --> tasks/src/data/ncbi/biosamples.rs:272:15 [INFO] [stdout] | [INFO] [stdout] 272 | pub fn import(input: PathBuf) -> Result<(), Error> { [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_input` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pool` [INFO] [stdout] --> tasks/src/data/ncbi/biosamples.rs:448:53 [INFO] [stdout] | [INFO] [stdout] 448 | fn convert_biosamples(analysed: AnalysedBiosamples, pool: &mut PgPool) -> Result<(), Error> { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_pool` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pool` [INFO] [stdout] --> tasks/src/data/ncbi/biosamples.rs:448:53 [INFO] [stdout] | [INFO] [stdout] 448 | fn convert_biosamples(analysed: AnalysedBiosamples, pool: &mut PgPool) -> Result<(), Error> { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_pool` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias `MatchedRecords` is never used [INFO] [stdout] --> tasks/src/data/ncbi/biosamples.rs:22:6 [INFO] [stdout] | [INFO] [stdout] 22 | type MatchedRecords = Vec<(Uuid, BioSample)>; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `parse_lat_lng` is never used [INFO] [stdout] --> tasks/src/data/ncbi/biosamples.rs:893:4 [INFO] [stdout] | [INFO] [stdout] 893 | fn parse_lat_lng(lat_long: &str) -> Result<(f64, f64), Error> { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias `MatchedRecords` is never used [INFO] [stdout] --> tasks/src/data/ncbi/biosamples.rs:22:6 [INFO] [stdout] | [INFO] [stdout] 22 | type MatchedRecords = Vec<(Uuid, BioSample)>; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `parse_lat_lng` is never used [INFO] [stdout] --> tasks/src/data/ncbi/biosamples.rs:893:4 [INFO] [stdout] | [INFO] [stdout] 893 | fn parse_lat_lng(lat_long: &str) -> Result<(f64, f64), Error> { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 6 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 6 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pool` [INFO] [stdout] --> workers/src/extractors/collection_extractor.rs:178:74 [INFO] [stdout] | [INFO] [stdout] 178 | fn extract_chunk(chunk: Vec, dataset: &Dataset, names: &NameMap, pool: &mut PgPool) -> Result { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_pool` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `organism` [INFO] [stdout] --> workers/src/extractors/collection_extractor.rs:310:110 [INFO] [stdout] | [INFO] [stdout] 310 | let collections = (records, specimens, events, organisms).into_par_iter().map(|(record, specimen, event, organism)| { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_organism` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `schema::taxa::dsl::*` [INFO] [stdout] --> server/src/database/stats.rs:274:13 [INFO] [stdout] | [INFO] [stdout] 274 | use schema::taxa::dsl::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Nullable` [INFO] [stdout] --> server/src/database/names.rs:4:31 [INFO] [stdout] | [INFO] [stdout] 4 | use diesel::sql_types::{Text, Nullable}; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `schema` [INFO] [stdout] --> server/src/database/taxa.rs:10:13 [INFO] [stdout] | [INFO] [stdout] 10 | use super::{schema, schema_gnl, PgPool, PageResult, Error}; [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Taxon` [INFO] [stdout] --> server/src/database/taxa.rs:11:21 [INFO] [stdout] | [INFO] [stdout] 11 | use super::models::{Taxon, TaxonomicStatus}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pool` [INFO] [stdout] --> workers/src/extractors/accession_extractor.rs:116:82 [INFO] [stdout] | [INFO] [stdout] 116 | fn extract_chunk(chunk: Vec, dataset: &Dataset, specimens: &SpecimenMap, pool: &mut PgPool) -> Result { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_pool` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `dataset` [INFO] [stdout] --> workers/src/extractors/accession_extractor.rs:155:55 [INFO] [stdout] | [INFO] [stdout] 155 | fn extract_accession_events(records: &MatchedRecords, dataset: &Dataset, events: &Vec) -> Vec [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_dataset` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `schema_gnl`, `schema` [INFO] [stdout] --> server/src/http/graphql/marker.rs:8:23 [INFO] [stdout] | [INFO] [stdout] 8 | use crate::database::{schema, schema_gnl}; [INFO] [stdout] | ^^^^^^ ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `uuid::Uuid` [INFO] [stdout] --> server/src/http/graphql/mod.rs:36:5 [INFO] [stdout] | [INFO] [stdout] 36 | use uuid::Uuid; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Path` [INFO] [stdout] --> server/src/http/admin/taxa.rs:3:35 [INFO] [stdout] | [INFO] [stdout] 3 | use axum::extract::{State, Query, Path}; [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `post`, `put` [INFO] [stdout] --> server/src/http/admin/taxa.rs:5:26 [INFO] [stdout] | [INFO] [stdout] 5 | use axum::routing::{get, post, put}; [INFO] [stdout] | ^^^^ ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Deserialize` [INFO] [stdout] --> server/src/http/admin/taxa.rs:9:24 [INFO] [stdout] | [INFO] [stdout] 9 | use serde::{Serialize, Deserialize}; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `schema::taxa::dsl::*` [INFO] [stdout] --> server/src/database/stats.rs:274:13 [INFO] [stdout] | [INFO] [stdout] 274 | use schema::taxa::dsl::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Nullable` [INFO] [stdout] --> server/src/database/names.rs:4:31 [INFO] [stdout] | [INFO] [stdout] 4 | use diesel::sql_types::{Text, Nullable}; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `schema` [INFO] [stdout] --> server/src/database/taxa.rs:10:13 [INFO] [stdout] | [INFO] [stdout] 10 | use super::{schema, schema_gnl, PgPool, PageResult, Error}; [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Taxon` [INFO] [stdout] --> server/src/database/taxa.rs:11:21 [INFO] [stdout] | [INFO] [stdout] 11 | use super::models::{Taxon, TaxonomicStatus}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `schema_gnl`, `schema` [INFO] [stdout] --> server/src/http/graphql/marker.rs:8:23 [INFO] [stdout] | [INFO] [stdout] 8 | use crate::database::{schema, schema_gnl}; [INFO] [stdout] | ^^^^^^ ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `dataset` [INFO] [stdout] --> workers/src/extractors/subsample_extractor.rs:118:38 [INFO] [stdout] | [INFO] [stdout] 118 | fn extract_chunk(chunk: Vec, dataset: &Dataset, specimens: &SpecimenMap, pool: &mut PgPool) -> Result { [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_dataset` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pool` [INFO] [stdout] --> workers/src/extractors/subsample_extractor.rs:118:82 [INFO] [stdout] | [INFO] [stdout] 118 | fn extract_chunk(chunk: Vec, dataset: &Dataset, specimens: &SpecimenMap, pool: &mut PgPool) -> Result { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_pool` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `uuid::Uuid` [INFO] [stdout] --> server/src/http/graphql/mod.rs:36:5 [INFO] [stdout] | [INFO] [stdout] 36 | use uuid::Uuid; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Path` [INFO] [stdout] --> server/src/http/admin/taxa.rs:3:35 [INFO] [stdout] | [INFO] [stdout] 3 | use axum::extract::{State, Query, Path}; [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `post`, `put` [INFO] [stdout] --> server/src/http/admin/taxa.rs:5:26 [INFO] [stdout] | [INFO] [stdout] 5 | use axum::routing::{get, post, put}; [INFO] [stdout] | ^^^^ ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Deserialize` [INFO] [stdout] --> server/src/http/admin/taxa.rs:9:24 [INFO] [stdout] | [INFO] [stdout] 9 | use serde::{Serialize, Deserialize}; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pool` [INFO] [stdout] --> workers/src/extractors/collection_extractor.rs:178:74 [INFO] [stdout] | [INFO] [stdout] 178 | fn extract_chunk(chunk: Vec, dataset: &Dataset, names: &NameMap, pool: &mut PgPool) -> Result { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_pool` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `organism` [INFO] [stdout] --> workers/src/extractors/collection_extractor.rs:310:110 [INFO] [stdout] | [INFO] [stdout] 310 | let collections = (records, specimens, events, organisms).into_par_iter().map(|(record, specimen, event, organism)| { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_organism` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `dataset` [INFO] [stdout] --> workers/src/extractors/dna_extraction_extractor.rs:119:38 [INFO] [stdout] | [INFO] [stdout] 119 | fn extract_chunk(chunk: Vec, dataset: &Dataset, subsamples: &SubsampleMap) -> Result { [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_dataset` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pool` [INFO] [stdout] --> workers/src/extractors/accession_extractor.rs:116:82 [INFO] [stdout] | [INFO] [stdout] 116 | fn extract_chunk(chunk: Vec, dataset: &Dataset, specimens: &SpecimenMap, pool: &mut PgPool) -> Result { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_pool` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `dataset` [INFO] [stdout] --> workers/src/extractors/accession_extractor.rs:155:55 [INFO] [stdout] | [INFO] [stdout] 155 | fn extract_accession_events(records: &MatchedRecords, dataset: &Dataset, events: &Vec) -> Vec [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_dataset` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `dataset` [INFO] [stdout] --> workers/src/extractors/subsample_extractor.rs:118:38 [INFO] [stdout] | [INFO] [stdout] 118 | fn extract_chunk(chunk: Vec, dataset: &Dataset, specimens: &SpecimenMap, pool: &mut PgPool) -> Result { [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_dataset` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pool` [INFO] [stdout] --> workers/src/extractors/subsample_extractor.rs:118:82 [INFO] [stdout] | [INFO] [stdout] 118 | fn extract_chunk(chunk: Vec, dataset: &Dataset, specimens: &SpecimenMap, pool: &mut PgPool) -> Result { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_pool` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `dataset` [INFO] [stdout] --> workers/src/extractors/dna_extraction_extractor.rs:119:38 [INFO] [stdout] | [INFO] [stdout] 119 | fn extract_chunk(chunk: Vec, dataset: &Dataset, subsamples: &SubsampleMap) -> Result { [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_dataset` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `dataset` [INFO] [stdout] --> workers/src/extractors/assembly_extractor.rs:157:53 [INFO] [stdout] | [INFO] [stdout] 157 | fn extract_assembly_events(records: MatchedRecords, dataset: &Dataset, events: &Vec) -> Vec [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_dataset` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `dataset` [INFO] [stdout] --> workers/src/extractors/annotation_extractor.rs:157:55 [INFO] [stdout] | [INFO] [stdout] 157 | fn extract_annotation_events(records: MatchedRecords, dataset: &Dataset, events: &Vec) -> Vec [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_dataset` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `dataset` [INFO] [stdout] --> workers/src/extractors/assembly_extractor.rs:157:53 [INFO] [stdout] | [INFO] [stdout] 157 | fn extract_assembly_events(records: MatchedRecords, dataset: &Dataset, events: &Vec) -> Vec [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_dataset` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `dataset` [INFO] [stdout] --> workers/src/extractors/deposition_extractor.rs:171:55 [INFO] [stdout] | [INFO] [stdout] 171 | fn extract_deposition_events(records: MatchedRecords, dataset: &Dataset, events: &Vec) -> Vec [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_dataset` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `dataset` [INFO] [stdout] --> workers/src/extractors/annotation_extractor.rs:157:55 [INFO] [stdout] | [INFO] [stdout] 157 | fn extract_annotation_events(records: MatchedRecords, dataset: &Dataset, events: &Vec) -> Vec [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_dataset` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `dataset` [INFO] [stdout] --> workers/src/extractors/deposition_extractor.rs:171:55 [INFO] [stdout] | [INFO] [stdout] 171 | fn extract_deposition_events(records: MatchedRecords, dataset: &Dataset, events: &Vec) -> Vec [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_dataset` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias `PgPool` is never used [INFO] [stdout] --> workers/src/extractors/conservation_status_extractor.rs:15:6 [INFO] [stdout] | [INFO] [stdout] 15 | type PgPool = Pool>; [INFO] [stdout] | ^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias `MatchedRecords` is never used [INFO] [stdout] --> workers/src/extractors/conservation_status_extractor.rs:16:6 [INFO] [stdout] | [INFO] [stdout] 16 | type MatchedRecords = Vec<(NameMatch, Record)>; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `status`, `state`, and `source` are never read [INFO] [stdout] --> workers/src/extractors/conservation_status_extractor.rs:24:5 [INFO] [stdout] | [INFO] [stdout] 21 | struct Record { [INFO] [stdout] | ------ fields in this struct [INFO] [stdout] ... [INFO] [stdout] 24 | status: String, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] 25 | state: Option, [INFO] [stdout] | ^^^^^ [INFO] [stdout] 26 | source: Option, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Record` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `extract` is never used [INFO] [stdout] --> workers/src/extractors/conservation_status_extractor.rs:40:8 [INFO] [stdout] | [INFO] [stdout] 40 | pub fn extract(path: PathBuf, source: &NameList, pool: &mut PgPool) -> Result, Error> { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `extract_statuses` is never used [INFO] [stdout] --> workers/src/extractors/conservation_status_extractor.rs:54:4 [INFO] [stdout] | [INFO] [stdout] 54 | fn extract_statuses(source: &NameList, records: MatchedRecords) -> Result, Error> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `scientific_name` and `canonical_name` are never read [INFO] [stdout] --> workers/src/extractors/accession_extractor.rs:27:5 [INFO] [stdout] | [INFO] [stdout] 25 | struct Record { [INFO] [stdout] | ------ fields in this struct [INFO] [stdout] 26 | accession: String, [INFO] [stdout] 27 | scientific_name: Option, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] 28 | canonical_name: Option, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Record` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `scientific_name` and `canonical_name` are never read [INFO] [stdout] --> workers/src/extractors/subsample_extractor.rs:27:5 [INFO] [stdout] | [INFO] [stdout] 25 | struct Record { [INFO] [stdout] | ------ fields in this struct [INFO] [stdout] 26 | accession: String, [INFO] [stdout] 27 | scientific_name: Option, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] 28 | canonical_name: Option, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Record` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `match_specimens` is never used [INFO] [stdout] --> workers/src/matchers/specimen_matcher.rs:52:8 [INFO] [stdout] | [INFO] [stdout] 52 | pub fn match_specimens(records: &Vec, dataset: &Uuid, pool: &mut PgPool) -> HashMap { [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `match_records` is never used [INFO] [stdout] --> workers/src/matchers/specimen_matcher.rs:86:8 [INFO] [stdout] | [INFO] [stdout] 86 | pub fn match_records(records: Vec, dataset_id: &Uuid, pool: &mut PgPool) -> Vec<(SpecimenMatch, T)> [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `match_subsamples` is never used [INFO] [stdout] --> workers/src/matchers/subsample_matcher.rs:52:8 [INFO] [stdout] | [INFO] [stdout] 52 | pub fn match_subsamples(records: &Vec, dataset: &Uuid, pool: &mut PgPool) -> HashMap { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `match_records` is never used [INFO] [stdout] --> workers/src/matchers/subsample_matcher.rs:86:8 [INFO] [stdout] | [INFO] [stdout] 86 | pub fn match_records(records: Vec, dataset_id: &Uuid, pool: &mut PgPool) -> Vec<(SubsampleMatch, T)> [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `match_dna_extracts` is never used [INFO] [stdout] --> workers/src/matchers/dna_extract_matcher.rs:52:8 [INFO] [stdout] | [INFO] [stdout] 52 | pub fn match_dna_extracts(records: &Vec, dataset: &Uuid, pool: &mut PgPool) -> HashMap { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `match_records` is never used [INFO] [stdout] --> workers/src/matchers/dna_extract_matcher.rs:86:8 [INFO] [stdout] | [INFO] [stdout] 86 | pub fn match_records(records: Vec, dataset_id: &Uuid, pool: &mut PgPool) -> Vec<(DnaExtractMatch, T)> [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `match_sequences` is never used [INFO] [stdout] --> workers/src/matchers/sequence_matcher.rs:52:8 [INFO] [stdout] | [INFO] [stdout] 52 | pub fn match_sequences(records: &Vec, dataset: &Uuid, pool: &mut PgPool) -> HashMap { [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `match_records` is never used [INFO] [stdout] --> workers/src/matchers/sequence_matcher.rs:86:8 [INFO] [stdout] | [INFO] [stdout] 86 | pub fn match_records(records: Vec, dataset_id: &Uuid, pool: &mut PgPool) -> Vec<(SequenceMatch, T)> [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias `PgPool` is never used [INFO] [stdout] --> workers/src/importers/conservation_status_importer.rs:14:6 [INFO] [stdout] | [INFO] [stdout] 14 | type PgPool = Pool>; [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `get_or_create_dataset` is never used [INFO] [stdout] --> workers/src/importers/conservation_status_importer.rs:17:8 [INFO] [stdout] | [INFO] [stdout] 17 | pub fn get_or_create_dataset(list_name: &str, list_description: &Option, pool: &mut PgPool) -> Result { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `import` is never used [INFO] [stdout] --> workers/src/importers/conservation_status_importer.rs:37:8 [INFO] [stdout] | [INFO] [stdout] 37 | pub fn import(path: PathBuf, list: &NameList, pool: &mut PgPool) -> Result<(), Error> { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `import_conservation_status` is never used [INFO] [stdout] --> workers/src/importers/conservation_status_importer.rs:44:4 [INFO] [stdout] | [INFO] [stdout] 44 | fn import_conservation_status(statuses: &Vec, pool: &mut PgPool) -> Result<(), Error> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias `PgPool` is never used [INFO] [stdout] --> workers/src/extractors/conservation_status_extractor.rs:15:6 [INFO] [stdout] | [INFO] [stdout] 15 | type PgPool = Pool>; [INFO] [stdout] | ^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias `MatchedRecords` is never used [INFO] [stdout] --> workers/src/extractors/conservation_status_extractor.rs:16:6 [INFO] [stdout] | [INFO] [stdout] 16 | type MatchedRecords = Vec<(NameMatch, Record)>; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `status`, `state`, and `source` are never read [INFO] [stdout] --> workers/src/extractors/conservation_status_extractor.rs:24:5 [INFO] [stdout] | [INFO] [stdout] 21 | struct Record { [INFO] [stdout] | ------ fields in this struct [INFO] [stdout] ... [INFO] [stdout] 24 | status: String, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] 25 | state: Option, [INFO] [stdout] | ^^^^^ [INFO] [stdout] 26 | source: Option, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Record` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `extract` is never used [INFO] [stdout] --> workers/src/extractors/conservation_status_extractor.rs:40:8 [INFO] [stdout] | [INFO] [stdout] 40 | pub fn extract(path: PathBuf, source: &NameList, pool: &mut PgPool) -> Result, Error> { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `extract_statuses` is never used [INFO] [stdout] --> workers/src/extractors/conservation_status_extractor.rs:54:4 [INFO] [stdout] | [INFO] [stdout] 54 | fn extract_statuses(source: &NameList, records: MatchedRecords) -> Result, Error> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `scientific_name` and `canonical_name` are never read [INFO] [stdout] --> workers/src/extractors/accession_extractor.rs:27:5 [INFO] [stdout] | [INFO] [stdout] 25 | struct Record { [INFO] [stdout] | ------ fields in this struct [INFO] [stdout] 26 | accession: String, [INFO] [stdout] 27 | scientific_name: Option, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] 28 | canonical_name: Option, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Record` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `scientific_name` and `canonical_name` are never read [INFO] [stdout] --> workers/src/extractors/subsample_extractor.rs:27:5 [INFO] [stdout] | [INFO] [stdout] 25 | struct Record { [INFO] [stdout] | ------ fields in this struct [INFO] [stdout] 26 | accession: String, [INFO] [stdout] 27 | scientific_name: Option, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] 28 | canonical_name: Option, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Record` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `match_specimens` is never used [INFO] [stdout] --> workers/src/matchers/specimen_matcher.rs:52:8 [INFO] [stdout] | [INFO] [stdout] 52 | pub fn match_specimens(records: &Vec, dataset: &Uuid, pool: &mut PgPool) -> HashMap { [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `match_records` is never used [INFO] [stdout] --> workers/src/matchers/specimen_matcher.rs:86:8 [INFO] [stdout] | [INFO] [stdout] 86 | pub fn match_records(records: Vec, dataset_id: &Uuid, pool: &mut PgPool) -> Vec<(SpecimenMatch, T)> [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `match_subsamples` is never used [INFO] [stdout] --> workers/src/matchers/subsample_matcher.rs:52:8 [INFO] [stdout] | [INFO] [stdout] 52 | pub fn match_subsamples(records: &Vec, dataset: &Uuid, pool: &mut PgPool) -> HashMap { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `match_records` is never used [INFO] [stdout] --> workers/src/matchers/subsample_matcher.rs:86:8 [INFO] [stdout] | [INFO] [stdout] 86 | pub fn match_records(records: Vec, dataset_id: &Uuid, pool: &mut PgPool) -> Vec<(SubsampleMatch, T)> [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `match_dna_extracts` is never used [INFO] [stdout] --> workers/src/matchers/dna_extract_matcher.rs:52:8 [INFO] [stdout] | [INFO] [stdout] 52 | pub fn match_dna_extracts(records: &Vec, dataset: &Uuid, pool: &mut PgPool) -> HashMap { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `match_records` is never used [INFO] [stdout] --> workers/src/matchers/dna_extract_matcher.rs:86:8 [INFO] [stdout] | [INFO] [stdout] 86 | pub fn match_records(records: Vec, dataset_id: &Uuid, pool: &mut PgPool) -> Vec<(DnaExtractMatch, T)> [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `match_sequences` is never used [INFO] [stdout] --> workers/src/matchers/sequence_matcher.rs:52:8 [INFO] [stdout] | [INFO] [stdout] 52 | pub fn match_sequences(records: &Vec, dataset: &Uuid, pool: &mut PgPool) -> HashMap { [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `match_records` is never used [INFO] [stdout] --> workers/src/matchers/sequence_matcher.rs:86:8 [INFO] [stdout] | [INFO] [stdout] 86 | pub fn match_records(records: Vec, dataset_id: &Uuid, pool: &mut PgPool) -> Vec<(SequenceMatch, T)> [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias `PgPool` is never used [INFO] [stdout] --> workers/src/importers/conservation_status_importer.rs:14:6 [INFO] [stdout] | [INFO] [stdout] 14 | type PgPool = Pool>; [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `get_or_create_dataset` is never used [INFO] [stdout] --> workers/src/importers/conservation_status_importer.rs:17:8 [INFO] [stdout] | [INFO] [stdout] 17 | pub fn get_or_create_dataset(list_name: &str, list_description: &Option, pool: &mut PgPool) -> Result { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `import` is never used [INFO] [stdout] --> workers/src/importers/conservation_status_importer.rs:37:8 [INFO] [stdout] | [INFO] [stdout] 37 | pub fn import(path: PathBuf, list: &NameList, pool: &mut PgPool) -> Result<(), Error> { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `import_conservation_status` is never used [INFO] [stdout] --> workers/src/importers/conservation_status_importer.rs:44:4 [INFO] [stdout] | [INFO] [stdout] 44 | fn import_conservation_status(statuses: &Vec, pool: &mut PgPool) -> Result<(), Error> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 30 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 30 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `name` [INFO] [stdout] --> server/src/database/stats.rs:273:43 [INFO] [stdout] | [INFO] [stdout] 273 | pub async fn dataset_breakdown(&self, name: &str) -> Result { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_name` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `conn` [INFO] [stdout] --> server/src/database/stats.rs:275:17 [INFO] [stdout] | [INFO] [stdout] 275 | let mut conn = self.pool.get().await?; [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_conn` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> server/src/database/stats.rs:275:13 [INFO] [stdout] | [INFO] [stdout] 275 | let mut conn = self.pool.get().await?; [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `name` [INFO] [stdout] --> server/src/database/stats.rs:273:43 [INFO] [stdout] | [INFO] [stdout] 273 | pub async fn dataset_breakdown(&self, name: &str) -> Result { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_name` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `conn` [INFO] [stdout] --> server/src/database/stats.rs:275:17 [INFO] [stdout] | [INFO] [stdout] 275 | let mut conn = self.pool.get().await?; [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_conn` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> server/src/database/stats.rs:275:13 [INFO] [stdout] | [INFO] [stdout] 275 | let mut conn = self.pool.get().await?; [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 12 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 12 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 17s [INFO] running `Command { std: "docker" "inspect" "af3a4ee02500686c043c68e56f302f95553b49d534023c6707e7ccc9a36f0123", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "af3a4ee02500686c043c68e56f302f95553b49d534023c6707e7ccc9a36f0123", kill_on_drop: false }` [INFO] [stdout] af3a4ee02500686c043c68e56f302f95553b49d534023c6707e7ccc9a36f0123