[INFO] fetching crate bio 1.4.0...
[INFO] checking bio-1.4.0 against master#4d1bd0db7f489b22c6d8aa2385937a95412c015b for pr-114682
[INFO] extracting crate bio 1.4.0 into /workspace/builds/worker-0-tc1/source
[INFO] validating manifest of crates.io crate bio 1.4.0 on toolchain 4d1bd0db7f489b22c6d8aa2385937a95412c015b
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4d1bd0db7f489b22c6d8aa2385937a95412c015b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate bio 1.4.0
[INFO] finished tweaking crates.io crate bio 1.4.0
[INFO] tweaked toml for crates.io crate bio 1.4.0 written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4d1bd0db7f489b22c6d8aa2385937a95412c015b" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4d1bd0db7f489b22c6d8aa2385937a95412c015b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded bv v0.11.1
[INFO] [stderr]   Downloaded strum_macros v0.25.3
[INFO] [stderr]   Downloaded rand_distr v0.4.3
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded rawpointer v0.2.1
[INFO] [stderr]   Downloaded rand_xorshift v0.3.0
[INFO] [stderr]   Downloaded getset v0.1.2
[INFO] [stderr]   Downloaded wait-timeout v0.2.0
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded rusty-fork v0.3.0
[INFO] [stderr]   Downloaded typenum v1.17.0
[INFO] [stderr]   Downloaded pest_meta v2.7.5
[INFO] [stderr]   Downloaded rustversion v1.0.14
[INFO] [stderr]   Downloaded pest v2.7.5
[INFO] [stderr]   Downloaded enum-map v1.1.1
[INFO] [stderr]   Downloaded libm v0.2.8
[INFO] [stderr]   Downloaded nalgebra v0.29.0
[INFO] [stderr]   Downloaded proptest v1.4.0
[INFO] [stderr]   Downloaded safe_arch v0.7.1
[INFO] [stderr]   Downloaded num-complex v0.4.4
[INFO] [stderr]   Downloaded ucd-trie v0.1.6
[INFO] [stderr]   Downloaded unarray v0.1.4
[INFO] [stderr]   Downloaded packed_simd v0.3.9
[INFO] [stderr]   Downloaded wide v0.7.13
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded ordered-float v3.9.2
[INFO] [stderr]   Downloaded simba v0.6.0
[INFO] [stderr]   Downloaded sha2 v0.10.8
[INFO] [stderr]   Downloaded enum-map-derive v0.6.0
[INFO] [stderr]   Downloaded ndarray v0.15.6
[INFO] [stderr]   Downloaded feature-probe v0.1.1
[INFO] [stderr]   Downloaded matrixmultiply v0.3.8
[INFO] [stderr]   Downloaded cpufeatures v0.2.11
[INFO] [stderr]   Downloaded bytecount v0.6.7
[INFO] [stderr]   Downloaded digest v0.10.7
[INFO] [stderr]   Downloaded pest_generator v2.7.5
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded quick-error v1.2.3
[INFO] [stderr]   Downloaded pest_derive v2.7.5
[INFO] [stderr]   Downloaded nalgebra-macros v0.1.0
[INFO] [stderr]   Downloaded strum v0.25.0
[INFO] [stderr]   Downloaded statrs v0.16.0
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded bio-types v1.0.1
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+4d1bd0db7f489b22c6d8aa2385937a95412c015b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] c8b667ddc3f1282024f7511669e2f0bbc2b64b08bc9f4717d97c2850d9b1e153
[INFO] running `Command { std: "docker" "start" "-a" "c8b667ddc3f1282024f7511669e2f0bbc2b64b08bc9f4717d97c2850d9b1e153", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c8b667ddc3f1282024f7511669e2f0bbc2b64b08bc9f4717d97c2850d9b1e153", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c8b667ddc3f1282024f7511669e2f0bbc2b64b08bc9f4717d97c2850d9b1e153", kill_on_drop: false }`
[INFO] [stdout] c8b667ddc3f1282024f7511669e2f0bbc2b64b08bc9f4717d97c2850d9b1e153
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+4d1bd0db7f489b22c6d8aa2385937a95412c015b" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 7f67133010348c8f03dc3c6fb1b05655121cd09dd7c98c7bf36ede171b003423
[INFO] running `Command { std: "docker" "start" "-a" "7f67133010348c8f03dc3c6fb1b05655121cd09dd7c98c7bf36ede171b003423", kill_on_drop: false }`
[INFO] [stderr]    Compiling libm v0.2.8
[INFO] [stderr]    Compiling libc v0.2.151
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]     Checking memchr v2.6.4
[INFO] [stderr]    Compiling paste v1.0.14
[INFO] [stderr]     Checking bytemuck v1.14.0
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling rustversion v1.0.14
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling num-traits v0.2.17
[INFO] [stderr]    Compiling syn v2.0.42
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]    Compiling serde v1.0.193
[INFO] [stderr]    Compiling matrixmultiply v0.3.8
[INFO] [stderr]    Compiling typenum v1.17.0
[INFO] [stderr]     Checking regex-syntax v0.8.2
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling num-rational v0.4.1
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling thiserror v1.0.51
[INFO] [stderr]     Checking safe_arch v0.7.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking hashbrown v0.14.3
[INFO] [stderr]     Checking wide v0.7.13
[INFO] [stderr]     Checking aho-corasick v1.1.2
[INFO] [stderr]    Compiling heck v0.4.1
[INFO] [stderr]    Compiling anyhow v1.0.76
[INFO] [stderr]     Checking equivalent v1.0.1
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking csv-core v0.1.11
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking quick-error v1.2.3
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking itertools v0.11.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking bytecount v0.6.7
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking unarray v0.1.4
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking strum v0.25.0
[INFO] [stderr]     Checking indexmap v2.1.0
[INFO] [stderr]     Checking num-complex v0.4.4
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v3.9.2
[INFO] [stderr]     Checking petgraph v0.6.4
[INFO] [stderr]     Checking getrandom v0.2.11
[INFO] [stderr]     Checking wait-timeout v0.2.0
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking rusty-fork v0.3.0
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand_xorshift v0.3.0
[INFO] [stderr]     Checking regex-automata v0.4.3
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]    Compiling serde_derive v1.0.193
[INFO] [stderr]    Compiling thiserror-impl v1.0.51
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking proptest v1.4.0
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling getset v0.1.2
[INFO] [stderr]     Checking regex v1.10.2
[INFO] [stderr]     Checking bio-types v1.0.1
[INFO] [stderr]     Checking enum-map v1.1.1
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]     Checking csv v1.3.0
[INFO] [stderr]     Checking multimap v0.8.3
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking statrs v0.16.0
[INFO] [stderr]     Checking bio v1.4.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `XYEmission`
[INFO] [stdout]   --> src/stats/pairhmm/pairhmm.rs:20:63
[INFO] [stdout]    |
[INFO] [stdout] 20 |     EmissionParameters, GapParameters, StartEndGapParameters, XYEmission,
[INFO] [stdout]    |                                                               ^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 15.83s
[INFO] running `Command { std: "docker" "inspect" "7f67133010348c8f03dc3c6fb1b05655121cd09dd7c98c7bf36ede171b003423", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7f67133010348c8f03dc3c6fb1b05655121cd09dd7c98c7bf36ede171b003423", kill_on_drop: false }`
[INFO] [stdout] 7f67133010348c8f03dc3c6fb1b05655121cd09dd7c98c7bf36ede171b003423
