[INFO] fetching crate noodles-vcf 0.32.0... [INFO] testing noodles-vcf-0.32.0 against try#ecd7b559f89c73ac8f1d318f7501006f37b944b2 for pr-112849 [INFO] extracting crate noodles-vcf 0.32.0 into /workspace/builds/worker-5-tc2/source [INFO] validating manifest of crates.io crate noodles-vcf 0.32.0 on toolchain ecd7b559f89c73ac8f1d318f7501006f37b944b2 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ecd7b559f89c73ac8f1d318f7501006f37b944b2" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate noodles-vcf 0.32.0 [INFO] removed 0 missing examples [INFO] finished tweaking crates.io crate noodles-vcf 0.32.0 [INFO] tweaked toml for crates.io crate noodles-vcf 0.32.0 written to /workspace/builds/worker-5-tc2/source/Cargo.toml [INFO] crate crates.io crate noodles-vcf 0.32.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ecd7b559f89c73ac8f1d318f7501006f37b944b2" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:19e73879b68f455e41552ea35293514db52ea292d993f571636dbffedb77a1ee" "/opt/rustwide/cargo-home/bin/cargo" "+ecd7b559f89c73ac8f1d318f7501006f37b944b2" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] ebb9277e2d4e71dce19a1f4b8e8d73957b6a86460c3681ecdba373f20102ea41 [INFO] running `Command { std: "docker" "start" "-a" "ebb9277e2d4e71dce19a1f4b8e8d73957b6a86460c3681ecdba373f20102ea41", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ebb9277e2d4e71dce19a1f4b8e8d73957b6a86460c3681ecdba373f20102ea41", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ebb9277e2d4e71dce19a1f4b8e8d73957b6a86460c3681ecdba373f20102ea41", kill_on_drop: false }` [INFO] [stdout] ebb9277e2d4e71dce19a1f4b8e8d73957b6a86460c3681ecdba373f20102ea41 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:19e73879b68f455e41552ea35293514db52ea292d993f571636dbffedb77a1ee" "/opt/rustwide/cargo-home/bin/cargo" "+ecd7b559f89c73ac8f1d318f7501006f37b944b2" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e75cee9c4e1e8117b69f8a9818580917589fcc5f3fc4dd8bc54bfb15be41ba70 [INFO] running `Command { std: "docker" "start" "-a" "e75cee9c4e1e8117b69f8a9818580917589fcc5f3fc4dd8bc54bfb15be41ba70", kill_on_drop: false }` [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling crc32fast v1.3.2 [INFO] [stderr] Compiling crossbeam-utils v0.8.15 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling autocfg v1.1.0 [INFO] [stderr] Compiling byteorder v1.4.3 [INFO] [stderr] Compiling memchr v2.5.0 [INFO] [stderr] Compiling bytes v1.4.0 [INFO] [stderr] Compiling hashbrown v0.12.3 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling noodles-core v0.12.0 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling percent-encoding v2.2.0 [INFO] [stderr] Compiling miniz_oxide v0.7.1 [INFO] [stderr] Compiling indexmap v1.9.3 [INFO] [stderr] Compiling crossbeam-channel v0.5.8 [INFO] [stderr] Compiling flate2 v1.0.26 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling noodles-bgzf v0.22.0 [INFO] [stderr] Compiling noodles-csi v0.20.0 [INFO] [stderr] Compiling noodles-tabix v0.23.0 [INFO] [stderr] Compiling noodles-vcf v0.32.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 13.10s [INFO] running `Command { std: "docker" "inspect" "e75cee9c4e1e8117b69f8a9818580917589fcc5f3fc4dd8bc54bfb15be41ba70", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e75cee9c4e1e8117b69f8a9818580917589fcc5f3fc4dd8bc54bfb15be41ba70", kill_on_drop: false }` [INFO] [stdout] e75cee9c4e1e8117b69f8a9818580917589fcc5f3fc4dd8bc54bfb15be41ba70 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:19e73879b68f455e41552ea35293514db52ea292d993f571636dbffedb77a1ee" "/opt/rustwide/cargo-home/bin/cargo" "+ecd7b559f89c73ac8f1d318f7501006f37b944b2" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 381ca5f1f66fed8a6d2f54c1a5b3757c7b7ad7450ba09c5f4f712a540183a3a2 [INFO] running `Command { std: "docker" "start" "-a" "381ca5f1f66fed8a6d2f54c1a5b3757c7b7ad7450ba09c5f4f712a540183a3a2", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.59 [INFO] [stderr] Compiling unicode-ident v1.0.9 [INFO] [stderr] Compiling quote v1.0.28 [INFO] [stderr] Compiling libc v0.2.144 [INFO] [stderr] Compiling tokio v1.28.2 [INFO] [stderr] Compiling pin-project-lite v0.2.9 [INFO] [stderr] Compiling syn v2.0.18 [INFO] [stderr] Compiling num_cpus v1.15.0 [INFO] [stderr] Compiling tokio-macros v2.1.0 [INFO] [stderr] Compiling noodles-vcf v0.32.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 26.69s [INFO] running `Command { std: "docker" "inspect" "381ca5f1f66fed8a6d2f54c1a5b3757c7b7ad7450ba09c5f4f712a540183a3a2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "381ca5f1f66fed8a6d2f54c1a5b3757c7b7ad7450ba09c5f4f712a540183a3a2", kill_on_drop: false }` [INFO] [stdout] 381ca5f1f66fed8a6d2f54c1a5b3757c7b7ad7450ba09c5f4f712a540183a3a2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:19e73879b68f455e41552ea35293514db52ea292d993f571636dbffedb77a1ee" "/opt/rustwide/cargo-home/bin/cargo" "+ecd7b559f89c73ac8f1d318f7501006f37b944b2" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 5c125d43b73e7c228dc624d597aef4065a9cfe253f171419f49c7a17eab7ccd3 [INFO] running `Command { std: "docker" "start" "-a" "5c125d43b73e7c228dc624d597aef4065a9cfe253f171419f49c7a17eab7ccd3", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.12s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/noodles_vcf-a3cd34bbc3880df3) [INFO] [stdout] [INFO] [stdout] running 179 tests [INFO] [stdout] test header::builder::tests::test_default ... ok [INFO] [stdout] test header::file_format::tests::test_default ... ok [INFO] [stdout] test header::fmt::tests::test_write_escaped_string ... ok [INFO] [stdout] test header::file_format::tests::test_fmt ... ok [INFO] [stdout] test header::file_format::tests::test_from_str ... ok [INFO] [stdout] test header::number::tests::test_default ... ok [INFO] [stdout] test header::builder::tests::test_build ... ok [INFO] [stdout] test header::number::tests::test_fmt ... ok [INFO] [stdout] test header::number::tests::test_from_str ... ok [INFO] [stdout] test header::parser::builder::tests::test_default ... ok [INFO] [stdout] test header::parser::tests::test_from_str_with_data_after_header ... ok [INFO] [stdout] test header::parser::tests::test_from_str_with_invalid_headers ... ok [INFO] [stdout] test header::parser::tests::test_from_str_with_duplicate_sample_names ... ok [INFO] [stdout] test header::record::key::other::tests::test_from_str ... ok [INFO] [stdout] test header::record::key::tests::test_fmt ... ok [INFO] [stdout] test header::parser::tests::test_from_str ... ok [INFO] [stdout] test header::record::parser::tests::test_parse_with_invalid_format_record ... ok [INFO] [stdout] test header::record::parser::tests::test_parse_with_invalid_filter_record ... ok [INFO] [stdout] test header::record::parser::tests::test_parse ... ok [INFO] [stdout] test header::parser::tests::test_from_str_without_assembly ... ok [INFO] [stdout] test header::record::parser::tests::test_parse_with_invalid_alternative_allele_record ... ok [INFO] [stdout] test header::record::parser::tests::test_parse_with_invalid_meta_record ... ok [INFO] [stdout] test header::record::parser::tests::test_parse_with_meta_record_struct_value ... ok [INFO] [stdout] test header::record::key::tests::test_from ... ok [INFO] [stdout] test header::record::value::map::alternative_allele::tests::test_fmt ... ok [INFO] [stdout] test header::record::value::map::alternative_allele::tests::test_try_from_fields_for_map_alternative_allele ... ok [INFO] [stdout] test header::record::value::map::alternative_allele::tests::test_try_from_fields_for_map_alternative_allele_with_missing_fields ... ok [INFO] [stdout] test header::record::value::map::contig::tag::tests::test_as_ref_str_for_standard ... ok [INFO] [stdout] test header::record::value::map::contig::tests::test_fmt ... ok [INFO] [stdout] test header::record::tests::test_from_str ... ok [INFO] [stdout] test header::record::value::map::contig::tests::test_try_from_fields_for_map_contig ... ok [INFO] [stdout] test header::record::value::map::filter::tests::test_try_from_fields_for_map_filter_with_missing_fields ... ok [INFO] [stdout] test header::record::value::map::format::tests::test_fmt ... ok [INFO] [stdout] test header::record::value::map::format::tests::test_try_from_fields_for_map_format ... ok [INFO] [stdout] test header::record::value::map::format::ty::tests::test_default ... ok [INFO] [stdout] test header::record::value::map::format::ty::tests::test_fmt ... ok [INFO] [stdout] test header::parser::tests::test_from_str_with_missing_headers ... ok [INFO] [stdout] test header::record::parser::tests::test_parse_with_record_struct_value_with_idx_field ... ok [INFO] [stdout] test header::parser::tests::test_from_str_without_file_format ... ok [INFO] [stdout] test header::record::parser::tests::test_parse_with_record_struct_value ... ok [INFO] [stdout] test header::record::value::map::filter::tests::test_try_from_fields_for_map_filter ... ok [INFO] [stdout] test header::record::value::map::format::ty::tests::test_from_str ... ok [INFO] [stdout] test header::record::value::map::info::tests::test_fmt ... ok [INFO] [stdout] test header::record::parser::tests::test_parse_with_invalid_info_record ... ok [INFO] [stdout] test header::parser::tests::test_from_str_with_multiple_fileformats ... ok [INFO] [stdout] test header::record::parser::tests::test_parse_with_record_string_value ... ok [INFO] [stdout] test header::record::value::map::format::tests::test_try_from_fields_for_map_format_with_missing_fields ... ok [INFO] [stdout] test header::record::value::map::filter::tests::test_fmt ... ok [INFO] [stdout] test header::record::value::map::info::tests::test_try_from_fields_for_map_info ... ok [INFO] [stdout] test header::record::value::map::info::ty::tests::test_from_str ... ok [INFO] [stdout] test header::record::value::map::info::tests::test_try_from_fields_for_map_info_with_missing_fields ... ok [INFO] [stdout] test header::record::value::map::info::ty::tests::test_fmt ... ok [INFO] [stdout] test header::record::value::map::meta::tag::tests::test_as_ref_str_for_standard ... ok [INFO] [stdout] test header::record::value::map::info::ty::tests::test_default ... ok [INFO] [stdout] test header::record::value::map::meta::tests::test_try_from_fields_for_map_meta ... ok [INFO] [stdout] test header::record::value::map::meta::tests::test_fmt ... ok [INFO] [stdout] test header::record::value::map::meta::tests::test_try_from_fields_for_map_meta_with_missing_fields ... ok [INFO] [stdout] test header::record::value::map::other::tests::test_fmt ... ok [INFO] [stdout] test header::record::value::map::other::tests::test_try_from_fields_for_map_other ... ok [INFO] [stdout] test header::record::value::map::tag::other::tests::test_from_str ... ok [INFO] [stdout] test header::tests::test_default ... ok [INFO] [stdout] test header::tests::test_fmt ... ok [INFO] [stdout] test header::tests::test_fmt_with_genotypes ... ok [INFO] [stdout] test header::tests::test_insert_with_duplicate_keys ... ok [INFO] [stdout] test indexed_reader::builder::tests::test_push_ext ... ok [INFO] [stdout] test reader::header::tests::test_read_raw_header ... ok [INFO] [stdout] test reader::header::tests::test_read_raw_header_with_missing_end_of_line ... ok [INFO] [stdout] test reader::header::tests::test_read_raw_header_with_multiple_buffer_fills ... ok [INFO] [stdout] test reader::header::tests::test_read_raw_header_with_no_header ... ok [INFO] [stdout] test reader::header::tests::test_read_raw_header_with_no_records ... ok [INFO] [stdout] test reader::record::alternate_bases::tests::test_parse_alternate_bases ... ok [INFO] [stdout] test reader::record::chromosome::tests::test_is_valid_name ... ok [INFO] [stdout] test reader::record::filters::tests::test_parse_filters ... ok [INFO] [stdout] test reader::record::chromosome::tests::test_parse_chromosome ... ok [INFO] [stdout] test reader::record::genotypes::keys::tests::test_parse_keys ... ok [INFO] [stdout] test reader::record::genotypes::values::tests::test_parse_values ... ok [INFO] [stdout] test reader::record::genotypes::values::value::tests::test_parse_value_with_character ... ok [INFO] [stdout] test reader::record::genotypes::values::value::tests::test_parse_value_with_float ... ok [INFO] [stdout] test reader::record::genotypes::tests::test_parse_genotypes ... ok [INFO] [stdout] test reader::record::genotypes::values::value::tests::test_parse_value_with_integer ... ok [INFO] [stdout] test reader::record::ids::id::tests::test_parse_id ... ok [INFO] [stdout] test reader::record::genotypes::values::value::tests::test_parse_value_with_string ... ok [INFO] [stdout] test reader::record::info::field::tests::test_parse_field ... ok [INFO] [stdout] test reader::record::ids::tests::test_parse_ids ... ok [INFO] [stdout] test reader::record::info::field::value::tests::test_parse_value_with_flag ... ok [INFO] [stdout] test reader::record::info::field::value::tests::test_parse_value_with_float ... ok [INFO] [stdout] test reader::record::info::field::value::tests::test_parse_value_with_character ... ok [INFO] [stdout] test reader::record::info::field::value::tests::test_parse_value_with_integer ... ok [INFO] [stdout] test reader::record::info::field::value::tests::test_parse_value_with_string ... ok [INFO] [stdout] test reader::record::position::tests::test_parse_position ... ok [INFO] [stdout] test reader::record::quality_score::tests::test_parse_position ... ok [INFO] [stdout] test reader::record::reference_bases::base::tests::test_parse_base ... ok [INFO] [stdout] test reader::record::reference_bases::tests::test_parse_reference_bases ... ok [INFO] [stdout] test reader::tests::test_read_line ... ok [INFO] [stdout] test record::alternate_bases::allele::symbol::structural_variant::tests::test_from_str ... ok [INFO] [stdout] test reader::tests::test_read_record ... ok [INFO] [stdout] test record::alternate_bases::allele::symbol::structural_variant::ty::tests::test_from_str ... ok [INFO] [stdout] test record::alternate_bases::allele::symbol::tests::test_fmt ... ok [INFO] [stdout] test record::alternate_bases::allele::symbol::tests::test_from_str ... ok [INFO] [stdout] test record::alternate_bases::allele::tests::test_fmt ... ok [INFO] [stdout] test record::alternate_bases::allele::tests::test_from_str ... ok [INFO] [stdout] test record::alternate_bases::tests::test_fmt ... ok [INFO] [stdout] test record::builder::tests::test_build ... ok [INFO] [stdout] test record::alternate_bases::tests::test_from_str ... ok [INFO] [stdout] test record::builder::tests::test_default ... ok [INFO] [stdout] test record::chromosome::tests::test_fmt ... ok [INFO] [stdout] test record::chromosome::tests::test_from_str ... ok [INFO] [stdout] test record::alternate_bases::allele::symbol::structural_variant::tests::test_from_type_for_symbol ... ok [INFO] [stdout] test record::filters::tests::test_fmt ... ok [INFO] [stdout] test record::filters::tests::test_from_str ... ok [INFO] [stdout] test record::alternate_bases::allele::symbol::structural_variant::ty::tests::test_fmt ... ok [INFO] [stdout] test record::filters::tests::test_try_from_iter ... ok [INFO] [stdout] test record::genotypes::keys::key::tests::test_fmt ... ok [INFO] [stdout] test reader::record::info::tests::test_parse_info ... ok [INFO] [stdout] test record::alternate_bases::allele::symbol::structural_variant::tests::test_fmt ... ok [INFO] [stdout] test record::genotypes::keys::key::tests::test_from_str ... ok [INFO] [stdout] test record::genotypes::keys::tests::test_try_from_vec_key_for_format ... ok [INFO] [stdout] test record::genotypes::sample::value::genotype::allele::phasing::tests::test_fmt ... ok [INFO] [stdout] test record::genotypes::sample::tests::test_genotype ... ok [INFO] [stdout] test record::genotypes::sample::value::genotype::tests::test_try_from_alleles_for_genotype ... ok [INFO] [stdout] test record::genotypes::sample::value::genotype::tests::test_from_str ... ok [INFO] [stdout] test record::genotypes::keys::tests::test_from_str ... ok [INFO] [stdout] test record::genotypes::keys::tests::test_fmt ... ok [INFO] [stdout] test record::genotypes::sample::value::tests::test_parse_with_character ... ok [INFO] [stdout] test record::genotypes::sample::value::tests::test_fmt ... ok [INFO] [stdout] test record::genotypes::sample::value::genotype::allele::phasing::tests::test_from_str ... ok [INFO] [stdout] test record::genotypes::sample::value::tests::test_parse_with_float ... ok [INFO] [stdout] test record::genotypes::sample::value::genotype::allele::tests::test_from_str ... ok [INFO] [stdout] test record::genotypes::sample::value::tests::test_parse_with_integer ... ok [INFO] [stdout] test record::genotypes::sample::value::tests::test_parse_with_string ... ok [INFO] [stdout] test record::genotypes::tests::test_fmt ... ok [INFO] [stdout] test record::genotypes::tests::test_from_str ... ok [INFO] [stdout] test record::genotypes::tests::test_genotypes ... ok [INFO] [stdout] test record::ids::id::tests::test_from_str ... ok [INFO] [stdout] test record::ids::tests::test_fmt ... ok [INFO] [stdout] test record::ids::tests::test_from_str ... ok [INFO] [stdout] test record::info::field::key::tests::test_fmt ... ok [INFO] [stdout] test record::info::field::tests::test_parse ... ok [INFO] [stdout] test record::info::field::key::tests::test_from_str ... ok [INFO] [stdout] test record::info::field::value::tests::test_fmt ... ok [INFO] [stdout] test record::info::field::value::tests::test_parse_with_character ... ok [INFO] [stdout] test record::info::field::value::tests::test_parse_with_flag ... ok [INFO] [stdout] test record::info::field::value::tests::test_parse_with_float ... ok [INFO] [stdout] test record::info::field::value::tests::test_parse_with_string ... ok [INFO] [stdout] test record::info::field::value::tests::test_parse_with_integer ... ok [INFO] [stdout] test record::info::tests::test_extend ... ok [INFO] [stdout] test record::info::tests::test_fmt ... ok [INFO] [stdout] test record::info::tests::test_from_str ... ok [INFO] [stdout] test record::parser::tests::test_parse ... ok [INFO] [stdout] test record::position::tests::test_fmt ... ok [INFO] [stdout] test record::position::tests::test_from_position_for_usize ... ok [INFO] [stdout] test record::parser::tests::test_parse_with_genotype_info ... ok [INFO] [stdout] test record::position::tests::test_from_usize_for_position ... ok [INFO] [stdout] test record::position::tests::test_from_str ... ok [INFO] [stdout] test record::quality_score::tests::test_fmt ... ok [INFO] [stdout] test record::quality_score::tests::test_from_str ... ok [INFO] [stdout] test record::reference_bases::base::tests::test_from_base_for_char ... ok [INFO] [stdout] test record::quality_score::tests::test_try_from_float_for_quality_score ... ok [INFO] [stdout] test record::reference_bases::base::tests::test_try_from_char_for_base ... ok [INFO] [stdout] test record::reference_bases::tests::test_fmt ... ok [INFO] [stdout] test record::reference_bases::tests::test_from_str ... ok [INFO] [stdout] test record::tests::test_default ... ok [INFO] [stdout] test record::tests::test_end ... ok [INFO] [stdout] test record::reference_bases::tests::test_try_from_vec_bases_for_reference_bases ... ok [INFO] [stdout] test record::tests::test_fmt ... ok [INFO] [stdout] test record::tests::test_fmt_with_format ... ok [INFO] [stdout] test record::value::tests::test_percent_decode ... ok [INFO] [stdout] test writer::record::chromosome::tests::test_write_chromosome ... ok [INFO] [stdout] test writer::record::filters::tests::test_write_filters ... ok [INFO] [stdout] test writer::record::genotypes::tests::test_write_genotypes ... ok [INFO] [stdout] test writer::record::genotypes::tests::test_write_value ... ok [INFO] [stdout] test writer::record::ids::tests::test_write_ids ... ok [INFO] [stdout] test writer::record::quality_score::tests::test_write_quality_score ... ok [INFO] [stdout] test writer::record::info::tests::test_write_info ... ok [INFO] [stdout] test writer::record::tests::test_write_record ... ok [INFO] [stdout] test writer::tests::test_write_header ... ok [INFO] [stdout] test writer::tests::test_write_record ... ok [INFO] [stdout] test writer::tests::test_write_record_with_format ... ok [INFO] [stdout] test record::quality_score::tests::test_from_quality_score_for_f32 ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 179 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Doc-tests noodles-vcf [INFO] [stdout] [INFO] [stdout] running 139 tests [INFO] [stdout] test src/header.rs - header::Header::alternative_alleles (line 261) ... ok [INFO] [stdout] test src/header.rs - header::Header::alternative_alleles_mut (line 290) ... ok [INFO] [stdout] test src/header.rs - header::Header::contigs (line 350) ... ok [INFO] [stdout] test src/header.rs - header::Header::assembly_mut (line 336) ... ok [INFO] [stdout] test src/header.rs - header::Header::contigs_mut (line 373) ... ok [INFO] [stdout] test src/header.rs - header::Header::builder (line 67) ... ok [INFO] [stdout] test src/header.rs - header::Header::infos (line 118) ... ok [INFO] [stdout] test src/header.rs - header::Header::filters_mut (line 190) ... ok [INFO] [stdout] test src/header.rs - header::Header::filters (line 169) ... ok [INFO] [stdout] test src/header.rs - header::Header::formats (line 210) ... ok [INFO] [stdout] test src/header.rs - header::Header::assembly (line 318) ... ok [INFO] [stdout] test src/header.rs - header::Header::infos_mut (line 144) ... ok [INFO] [stdout] test src/header.rs - header::Header::file_format (line 81) ... ok [INFO] [stdout] test src/header.rs - header::Header::formats_mut (line 236) ... ok [INFO] [stdout] test src/header.rs - header::Header::file_format_mut (line 100) ... ok [INFO] [stdout] test src/header.rs - header::Header::get (line 567) ... ok [INFO] [stdout] test src/header.rs - header::Header::other_records (line 519) ... ok [INFO] [stdout] test src/header.rs - header::Header::insert (line 596) ... ok [INFO] [stdout] test src/header.rs - header::Header::pedigree_db (line 440) ... ok [INFO] [stdout] test src/header.rs - header::Header::sample_names (line 471) ... ok [INFO] [stdout] test src/header.rs - header::Header::other_records_mut (line 542) ... ok [INFO] [stdout] test src/header.rs - header::Header::meta (line 395) ... ok [INFO] [stdout] test src/header.rs - header::Header::pedigree_db_mut (line 457) ... ok [INFO] [stdout] test src/header.rs - header::Header::sample_names_mut (line 495) ... ok [INFO] [stdout] test src/header.rs - header::Header::meta_mut (line 418) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::add_alternative_allele (line 137) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::add_format (line 106) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::add_contig (line 192) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::add_meta (line 220) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::add_filter (line 81) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::add_sample_name (line 293) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::build (line 358) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::set_assembly (line 171) ... ok [INFO] [stdout] test src/header/file_format.rs - header::file_format::FileFormat::new (line 25) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::insert (line 320) ... ok [INFO] [stdout] test src/header/record/value/map/contig.rs - header::record::value::map::contig::Map::md5_mut (line 98) ... ok [INFO] [stdout] test src/header/file_format.rs - header::file_format::FileFormat::major (line 37) ... ok [INFO] [stdout] test src/header/record/value/map/contig.rs - header::record::value::map::contig::Map::new (line 43) ... ok [INFO] [stdout] test src/header/record/value/map/contig.rs - header::record::value::map::contig::Map::url_mut (line 128) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::set_pedigree_db (line 247) ... ok [INFO] [stdout] test src/header/file_format.rs - header::file_format::FileFormat::minor (line 50) ... ok [INFO] [stdout] test src/header/record/value/map/filter.rs - header::record::value::map::filter::Map::new (line 71) ... ok [INFO] [stdout] test src/indexed_reader/builder.rs - indexed_reader::builder::Builder::build_from_path (line 40) - compile ... ok [INFO] [stdout] test src/header/record/value/map/filter.rs - header::record::value::map::filter::Map::pass (line 51) ... ok [INFO] [stdout] test src/header/record/value/map/meta.rs - header::record::value::map::meta::Map::new (line 30) ... ok [INFO] [stdout] test src/lib.rs - (line 9) - compile ... ok [INFO] [stdout] test src/header/record/value/map/contig.rs - header::record::value::map::contig::Map::length (line 55) ... ok [INFO] [stdout] test src/header/record/value/map/format.rs - header::record::value::map::format::Map::new (line 77) ... ok [INFO] [stdout] test src/header/record/value/map/meta.rs - header::record::value::map::meta::Map::values (line 49) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader (line 32) - compile ... ok [INFO] [stdout] test src/header/record/value/map/contig.rs - header::record::value::map::contig::Map::url (line 115) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::set_file_format (line 36) ... ok [INFO] [stdout] test src/header/record/key.rs - header::record::key::Key::other (line 112) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::add_info (line 54) ... ok [INFO] [stdout] test src/header/record/value/map/alternative_allele.rs - header::record::value::map::alternative_allele::Map::new (line 39) ... ok [INFO] [stdout] test src/header/record/value/map/other.rs - header::record::value::map::other::Map::new (line 26) ... ok [INFO] [stdout] test src/header/record/value/map/info.rs - header::record::value::map::info::Map::new (line 77) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader>::query (line 270) - compile ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::records (line 193) - compile ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::get_mut (line 93) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::new (line 58) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::get_ref (line 79) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::into_inner (line 107) ... ok [INFO] [stdout] test src/header/builder.rs - header::builder::Builder::set_sample_names (line 268) ... ok [INFO] [stdout] test src/header/record/value/map/contig.rs - header::record::value::map::contig::Map::length_mut (line 68) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader>::virtual_position (line 222) ... ok [INFO] [stdout] test src/indexed_reader/builder.rs - indexed_reader::builder::Builder::build_from_reader (line 65) ... ok [INFO] [stdout] test src/header/record/value/map/contig.rs - header::record::value::map::contig::Map::md5 (line 85) ... ok [INFO] [stdout] test src/indexed_reader/builder.rs - indexed_reader::builder::Builder::set_index (line 24) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader>::seek (line 250) ... ok [INFO] [stdout] test src/record.rs - record::Record::alternate_bases (line 284) ... ok [INFO] [stdout] test src/record.rs - record::Record::builder (line 72) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::read_record (line 158) ... ok [INFO] [stdout] test src/record.rs - record::Record::chromosome_mut (line 108) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::read_header (line 126) ... ok [INFO] [stdout] test src/record.rs - record::Record::alternate_bases_mut (line 311) ... ok [INFO] [stdout] test src/record.rs - record::Record::end (line 677) ... ok [INFO] [stdout] test src/record.rs - record::Record::end (line 661) ... ok [INFO] [stdout] test src/record.rs - record::Record::filters (line 389) ... ok [INFO] [stdout] test src/record.rs - record::Record::format (line 495) ... ok [INFO] [stdout] test src/record.rs - record::Record::chromosome (line 88) ... ok [INFO] [stdout] test src/record.rs - record::Record::genotypes_mut (line 561) ... ok [INFO] [stdout] test src/record.rs - record::Record::filters_mut (line 410) ... ok [INFO] [stdout] test src/record.rs - record::Record::ids (line 182) ... ok [INFO] [stdout] test src/record.rs - record::Record::ids_mut (line 203) ... ok [INFO] [stdout] test src/record.rs - record::Record::genotypes (line 528) ... ok [INFO] [stdout] test src/record.rs - record::Record::position_mut (line 160) ... ok [INFO] [stdout] test src/record.rs - record::Record::position (line 136) ... ok [INFO] [stdout] test src/record.rs - record::Record::info (line 432) ... ok [INFO] [stdout] test src/record/alternate_bases/allele/symbol/structural_variant.rs - record::alternate_bases::allele::symbol::structural_variant::StructuralVariant::new (line 23) ... ok [INFO] [stdout] test src/record.rs - record::Record::reference_bases_mut (line 256) ... ok [INFO] [stdout] test src/record.rs - record::Record::quality_score (line 343) ... ok [INFO] [stdout] test src/record.rs - record::Record::info_mut (line 462) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_info (line 243) ... ok [INFO] [stdout] test src/record/alternate_bases/allele/symbol/structural_variant.rs - record::alternate_bases::allele::symbol::structural_variant::StructuralVariant::ty (line 39) ... ok [INFO] [stdout] test src/record.rs - record::Record::quality_score_mut (line 364) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_position (line 73) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_reference_bases (line 116) ... ok [INFO] [stdout] test src/record/alternate_bases/allele/symbol/structural_variant.rs - record::alternate_bases::allele::symbol::structural_variant::StructuralVariant::subtypes (line 56) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_quality_score (line 199) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_alternate_bases (line 171) ... ok [INFO] [stdout] test src/record/filters.rs - record::filters::Filters::try_from_iter (line 47) ... ok [INFO] [stdout] test src/record/genotypes.rs - record::genotypes::Genotypes::is_empty (line 83) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_filters (line 221) ... ok [INFO] [stdout] test src/record/genotypes.rs - record::genotypes::Genotypes::keys (line 96) ... ok [INFO] [stdout] test src/record.rs - record::Record::try_from_str (line 55) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_chromosome (line 52) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_genotypes (line 274) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::build (line 305) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::add_reference_base (line 144) ... ok [INFO] [stdout] test src/record.rs - record::Record::reference_bases (line 228) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_ids (line 94) ... ok [INFO] [stdout] test src/record/genotypes.rs - record::genotypes::Genotypes::new (line 71) ... ok [INFO] [stdout] test src/record/genotypes/sample/value/genotype/allele.rs - record::genotypes::sample::value::genotype::allele::Allele::new (line 21) ... ok [INFO] [stdout] test src/record/genotypes.rs - record::genotypes::Genotypes::parse (line 36) ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::get_index (line 120) ... ok [INFO] [stdout] test src/record/genotypes/sample/value.rs - record::genotypes::sample::value::Value::from_str_format (line 96) ... ok [INFO] [stdout] test src/record/genotypes/sample/value/genotype/allele.rs - record::genotypes::sample::value::genotype::allele::Allele::phasing (line 60) ... ok [INFO] [stdout] test src/record/genotypes.rs - record::genotypes::Genotypes::keys_mut (line 115) ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::clear (line 56) ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::is_empty (line 41) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer::new (line 58) ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::get_mut (line 96) ... ok [INFO] [stdout] test src/record/genotypes/sample/value/genotype/allele.rs - record::genotypes::sample::value::genotype::allele::Allele::position_mut (line 46) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer::get_mut (line 83) ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::insert (line 171) ... ok [INFO] [stdout] test src/record/genotypes/sample/value/genotype/allele.rs - record::genotypes::sample::value::genotype::allele::Allele::position (line 33) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer::into_inner (line 96) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer::get_ref (line 70) ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::len (line 28) ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::get_index_mut (line 144) ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::get (line 75) ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::keys (line 195) ... ok [INFO] [stdout] test src/record/info.rs - record::info::Info::values (line 216) ... ok [INFO] [stdout] test src/record/info/field/value.rs - record::info::field::value::Value::from_str_info (line 101) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer (line 12) ... ok [INFO] [stdout] test src/record/genotypes/sample/value/genotype/allele.rs - record::genotypes::sample::value::genotype::allele::Allele::phasing_mut (line 73) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer::write_record (line 127) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer::write_header (line 109) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 139 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 37.66s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "5c125d43b73e7c228dc624d597aef4065a9cfe253f171419f49c7a17eab7ccd3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5c125d43b73e7c228dc624d597aef4065a9cfe253f171419f49c7a17eab7ccd3", kill_on_drop: false }` [INFO] [stdout] 5c125d43b73e7c228dc624d597aef4065a9cfe253f171419f49c7a17eab7ccd3