[INFO] cloning repository https://github.com/ban-m/kiley
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ban-m/kiley" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fban-m%2Fkiley", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fban-m%2Fkiley'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 823976103f0dde17e28c5bc6044fe598cf788a30
[INFO] testing ban-m/kiley/823976103f0dde17e28c5bc6044fe598cf788a30 against try#ecd7b559f89c73ac8f1d318f7501006f37b944b2 for pr-112849
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fban-m%2Fkiley" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/ban-m/kiley on toolchain ecd7b559f89c73ac8f1d318f7501006f37b944b2
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ecd7b559f89c73ac8f1d318f7501006f37b944b2" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/ban-m/kiley
[INFO] finished tweaking git repo https://github.com/ban-m/kiley
[INFO] tweaked toml for git repo https://github.com/ban-m/kiley written to /workspace/builds/worker-6-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/ban-m/kiley already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ecd7b559f89c73ac8f1d318f7501006f37b944b2" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a420fdec406141845121210faa381f8029b0be6d4170deff7c4445a424f67918" "/opt/rustwide/cargo-home/bin/cargo" "+ecd7b559f89c73ac8f1d318f7501006f37b944b2" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 5b7f05b4e1dfbc8d74da7031009778b5bf03a5bcf7d4515cf0259656ae210412
[INFO] running `Command { std: "docker" "start" "-a" "5b7f05b4e1dfbc8d74da7031009778b5bf03a5bcf7d4515cf0259656ae210412", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "5b7f05b4e1dfbc8d74da7031009778b5bf03a5bcf7d4515cf0259656ae210412", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5b7f05b4e1dfbc8d74da7031009778b5bf03a5bcf7d4515cf0259656ae210412", kill_on_drop: false }`
[INFO] [stdout] 5b7f05b4e1dfbc8d74da7031009778b5bf03a5bcf7d4515cf0259656ae210412
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a420fdec406141845121210faa381f8029b0be6d4170deff7c4445a424f67918" "/opt/rustwide/cargo-home/bin/cargo" "+ecd7b559f89c73ac8f1d318f7501006f37b944b2" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] b293f9dd013e9235f6e9224d1b3cb108f0f0b6cc8ec352f57b24937a22ee107b
[INFO] running `Command { std: "docker" "start" "-a" "b293f9dd013e9235f6e9224d1b3cb108f0f0b6cc8ec352f57b24937a22ee107b", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.134
[INFO] [stderr]    Compiling proc-macro2 v1.0.46
[INFO] [stderr]    Compiling crossbeam-utils v0.8.12
[INFO] [stderr]    Compiling unicode-ident v1.0.4
[INFO] [stderr]    Compiling syn v1.0.101
[INFO] [stderr]    Compiling serde_derive v1.0.145
[INFO] [stderr]    Compiling rayon-core v1.9.3
[INFO] [stderr]    Compiling log v0.4.17
[INFO] [stderr]    Compiling serde v1.0.145
[INFO] [stderr]    Compiling ppv-lite86 v0.2.16
[INFO] [stderr]    Compiling regex-syntax v0.6.27
[INFO] [stderr]    Compiling memoffset v0.6.5
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.11
[INFO] [stderr]    Compiling rayon v1.5.3
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling ansi_term v0.12.1
[INFO] [stderr]    Compiling termcolor v1.1.3
[INFO] [stderr]    Compiling either v1.8.0
[INFO] [stderr]    Compiling bytecount v0.6.3
[INFO] [stderr]    Compiling humantime v2.1.0
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling crossbeam-channel v0.5.6
[INFO] [stderr]    Compiling quote v1.0.21
[INFO] [stderr]    Compiling crossbeam-deque v0.8.2
[INFO] [stderr]    Compiling jobserver v0.1.25
[INFO] [stderr]    Compiling getrandom v0.2.7
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling num_cpus v1.13.1
[INFO] [stderr]    Compiling clap v2.34.0
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling cc v1.0.73
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand_xoshiro v0.6.0
[INFO] [stderr]    Compiling regex v1.6.0
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling edlib_sys v0.2.0 (https://github.com/ban-m/edlib-sys.git?branch=master#7ab12d04)
[INFO] [stderr]    Compiling env_logger v0.9.1
[INFO] [stderr]    Compiling bio_utils v0.3.0 (https://github.com/ban-m/bio_utils.git#dc32ea1d)
[INFO] [stderr]    Compiling kiley v0.3.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 15.65s
[INFO] running `Command { std: "docker" "inspect" "b293f9dd013e9235f6e9224d1b3cb108f0f0b6cc8ec352f57b24937a22ee107b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b293f9dd013e9235f6e9224d1b3cb108f0f0b6cc8ec352f57b24937a22ee107b", kill_on_drop: false }`
[INFO] [stdout] b293f9dd013e9235f6e9224d1b3cb108f0f0b6cc8ec352f57b24937a22ee107b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a420fdec406141845121210faa381f8029b0be6d4170deff7c4445a424f67918" "/opt/rustwide/cargo-home/bin/cargo" "+ecd7b559f89c73ac8f1d318f7501006f37b944b2" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 26f781420c53aa4d00e0c1aee2c04f6f5541547a7c8e75418feb2af9f1103a74
[INFO] running `Command { std: "docker" "start" "-a" "26f781420c53aa4d00e0c1aee2c04f6f5541547a7c8e75418feb2af9f1103a74", kill_on_drop: false }`
[INFO] [stderr]    Compiling kiley v0.3.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 4.24s
[INFO] running `Command { std: "docker" "inspect" "26f781420c53aa4d00e0c1aee2c04f6f5541547a7c8e75418feb2af9f1103a74", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "26f781420c53aa4d00e0c1aee2c04f6f5541547a7c8e75418feb2af9f1103a74", kill_on_drop: false }`
[INFO] [stdout] 26f781420c53aa4d00e0c1aee2c04f6f5541547a7c8e75418feb2af9f1103a74
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a420fdec406141845121210faa381f8029b0be6d4170deff7c4445a424f67918" "/opt/rustwide/cargo-home/bin/cargo" "+ecd7b559f89c73ac8f1d318f7501006f37b944b2" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 3af940fb2e649b3cb7d6e9f3c0a0d30287629a86ec92d736a9a7a79ac76bf8e6
[INFO] running `Command { std: "docker" "start" "-a" "3af940fb2e649b3cb7d6e9f3c0a0d30287629a86ec92d736a9a7a79ac76bf8e6", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.04s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/kiley-968fbede8459f9e4)
[INFO] [stdout] 
[INFO] [stdout] running 42 tests
[INFO] [stdout] test bialignment::test::edit_dist_check ... ok
[INFO] [stdout] test bialignment::test::global_affine_check ... ok
[INFO] [stdout] test bialignment::test::edit_dist_ops_check ... ok
[INFO] [stdout] test bialignment::test::edit_dist_fast_check_short ... ok
[INFO] [stdout] test bialignment::guided::test::edit_dist_check_iden ... ok
[INFO] [stdout] test hmm::full::test::align ... ok
[INFO] [stdout] test hmm::guided::tests::align ... ok
[INFO] [stdout] test bialignment::guided::test::edit_dist_check ... ok
[INFO] [stdout] test hmm::guided::tests::likelihood2 ... ok
[INFO] [stdout] test hmm::full::test::forward ... ok
[INFO] [stdout] test bialignment::guided::test::global_check ... ok
[INFO] [stdout] test bialignment::guided::test::infix_check ... ok
[INFO] [stdout] test bialignment::guided::test::overlap_check ... ok
[INFO] [stdout] test hmm::guided::tests::update_aln_path_test ... ok
[INFO] [stdout] test hmm::guided_antidiagonal::test::align ... ok
[INFO] [stdout] test hmm::guided::tests::likelihood ... ok
[INFO] [stdout] test bialignment::test::naive_edit_dist_modification_check ... ok
[INFO] [stdout] test bialignment::banded::tests::banded_naive_check ... ok
[INFO] [stdout] test bialignment::banded::tests::global_affine_banded_check ... ok
[INFO] [stdout] test hmm::guided_antidiagonal::test::lk_post_test ... ok
[INFO] [stdout] test hmm::guided_antidiagonal::test::align_test ... ok
[INFO] [stdout] test hmm::guided_antidiagonal::test::lk_post ... ok
[INFO] [stdout] test hmm::guided_antidiagonal::test::fit_test ... ok
[INFO] [stdout] test hmm::tests::align ... ok
[INFO] [stdout] test hmm::tests::hmm_full_guided ... ok
[INFO] [stdout] test op::tests::take_skip ... ok
[INFO] [stdout] test padseq::tests::padseq ... ok
[INFO] [stdout] test hmm::guided_antidiagonal::test::lk_test ... ok
[INFO] [stdout] test bialignment::banded::tests::edit_dist_modification_check has been running for over 60 seconds
[INFO] [stdout] test bialignment::guided::test::modification_table_check has been running for over 60 seconds
[INFO] [stdout] test bialignment::guided::test::polish_test has been running for over 60 seconds
[INFO] [stdout] test bialignment::test::edit_dist_fast_check has been running for over 60 seconds
[INFO] [stdout] test bialignment::test::edit_dist_fast_check_sim has been running for over 60 seconds
[INFO] [stdout] test bialignment::test::edit_dist_post_check has been running for over 60 seconds
[INFO] [stdout] test hmm::full::test::modification_table_test has been running for over 60 seconds
[INFO] [stdout] test hmm::guided::tests::modification_table has been running for over 60 seconds
[INFO] [stdout] test hmm::guided::tests::modification_table2 has been running for over 60 seconds
[INFO] [stdout] test hmm::guided::tests::polish_long_insertion has been running for over 60 seconds
[INFO] [stdout] test hmm::guided::tests::polish_test has been running for over 60 seconds
[INFO] [stdout] test hmm::full::test::modification_table_test ... ok
[INFO] [stdout] test hmm::guided_antidiagonal::test::lk_pre ... ok
[INFO] [stdout] test hmm::guided_antidiagonal::test::modification_table_test has been running for over 60 seconds
[INFO] [stdout] test hmm::guided_antidiagonal::test::polish has been running for over 60 seconds
[INFO] [stdout] test bialignment::guided::test::polish_test ... ok
[INFO] [stdout] test bialignment::test::edit_dist_fast_check_sim ... ok
[INFO] [stdout] test bialignment::banded::tests::edit_dist_modification_check ... ok
[INFO] [stdout] test bialignment::test::edit_dist_fast_check ... ok
[INFO] [stdout] test hmm::guided_antidiagonal::test::modification_table_test ... ok
[INFO] [stdout] test bialignment::test::edit_dist_post_check ... ok
[INFO] [stdout] test hmm::guided::tests::modification_table ... ok
[INFO] [stdout] test bialignment::guided::test::modification_table_check ... ok
[INFO] [stdout] test hmm::guided::tests::polish_test ... ok
[INFO] [stdout] test hmm::guided::tests::polish_long_insertion ... ok
[INFO] [stdout] test hmm::guided_antidiagonal::test::polish ... ok
[INFO] [stdout] test hmm::guided::tests::modification_table2 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 42 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 893.27s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/inves.rs (/opt/rustwide/target/debug/deps/inves-4eb6e83e1b6d69b1)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/test.rs (/opt/rustwide/target/debug/deps/test-022655f079212c4d)
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests kiley
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "3af940fb2e649b3cb7d6e9f3c0a0d30287629a86ec92d736a9a7a79ac76bf8e6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3af940fb2e649b3cb7d6e9f3c0a0d30287629a86ec92d736a9a7a79ac76bf8e6", kill_on_drop: false }`
[INFO] [stdout] 3af940fb2e649b3cb7d6e9f3c0a0d30287629a86ec92d736a9a7a79ac76bf8e6