[INFO] fetching crate bigwig2bam 0.1.1... [INFO] checking bigwig2bam-0.1.1 against master#18a6d911caba59605eb03db1452848a85d2e5879 for pr-112743 [INFO] extracting crate bigwig2bam 0.1.1 into /workspace/builds/worker-1-tc1/source [INFO] validating manifest of crates.io crate bigwig2bam 0.1.1 on toolchain 18a6d911caba59605eb03db1452848a85d2e5879 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+18a6d911caba59605eb03db1452848a85d2e5879" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate bigwig2bam 0.1.1 [INFO] finished tweaking crates.io crate bigwig2bam 0.1.1 [INFO] tweaked toml for crates.io crate bigwig2bam 0.1.1 written to /workspace/builds/worker-1-tc1/source/Cargo.toml [INFO] crate crates.io crate bigwig2bam 0.1.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+18a6d911caba59605eb03db1452848a85d2e5879" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded matrixmultiply v0.3.2 [INFO] [stderr] Downloaded wildmatch v2.1.1 [INFO] [stderr] Downloaded enum-map-derive v0.6.0 [INFO] [stderr] Downloaded feature-probe v0.1.1 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded custom_derive v0.1.7 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded byteordered v0.6.0 [INFO] [stderr] Downloaded libdeflater v0.7.5 [INFO] [stderr] Downloaded attohttpc v0.18.0 [INFO] [stderr] Downloaded bam v0.1.4 [INFO] [stderr] Downloaded security-framework v2.8.2 [INFO] [stderr] Downloaded statrs v0.16.0 [INFO] [stderr] Downloaded openssl-sys v0.9.80 [INFO] [stderr] Downloaded libdeflate-sys v0.7.5 [INFO] [stderr] Downloaded bigtools v0.1.11 [INFO] [stderr] Downloaded openssl v0.10.45 [INFO] [stderr] Downloaded bio v1.1.0 [INFO] [stderr] Downloaded clap v4.1.4 [INFO] [stderr] Downloaded rand_distr v0.4.3 [INFO] [stderr] Downloaded wide v0.7.6 [INFO] [stderr] Downloaded safe_arch v0.6.0 [INFO] 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"1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:19e73879b68f455e41552ea35293514db52ea292d993f571636dbffedb77a1ee" "/opt/rustwide/cargo-home/bin/cargo" "+18a6d911caba59605eb03db1452848a85d2e5879" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 419cd71f64190bd06fec6100393cdeb4230cb50bb99d30140bdf1742280cbef3 [INFO] running `Command { std: "docker" "start" "-a" "419cd71f64190bd06fec6100393cdeb4230cb50bb99d30140bdf1742280cbef3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "419cd71f64190bd06fec6100393cdeb4230cb50bb99d30140bdf1742280cbef3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "419cd71f64190bd06fec6100393cdeb4230cb50bb99d30140bdf1742280cbef3", kill_on_drop: false }` [INFO] [stdout] 419cd71f64190bd06fec6100393cdeb4230cb50bb99d30140bdf1742280cbef3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:19e73879b68f455e41552ea35293514db52ea292d993f571636dbffedb77a1ee" "/opt/rustwide/cargo-home/bin/cargo" "+18a6d911caba59605eb03db1452848a85d2e5879" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] b9426a6c6f226a8ac36a1656d6de24bc95df4feea91019e7d7814342f801a498 [INFO] running `Command { std: "docker" "start" "-a" "b9426a6c6f226a8ac36a1656d6de24bc95df4feea91019e7d7814342f801a498", kill_on_drop: false }` [INFO] [stderr] Compiling syn v1.0.107 [INFO] [stderr] Compiling libm v0.2.6 [INFO] [stderr] Compiling num-traits v0.2.15 [INFO] [stderr] Compiling pkg-config v0.3.26 [INFO] [stderr] Compiling num-integer v0.1.45 [INFO] [stderr] Compiling futures-core v0.3.26 [INFO] [stderr] Compiling paste v1.0.11 [INFO] [stderr] Compiling crc32fast v1.3.2 [INFO] [stderr] Checking safe_arch v0.6.0 [INFO] [stderr] Compiling rustversion v1.0.11 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking once_cell v1.17.0 [INFO] [stderr] Compiling openssl v0.10.45 [INFO] [stderr] Checking miniz_oxide v0.6.2 [INFO] [stderr] Checking matrixmultiply v0.3.2 [INFO] [stderr] 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v1.0.152 [INFO] [stderr] Checking attohttpc v0.18.0 [INFO] [stderr] Checking futures-executor v0.3.26 [INFO] [stderr] Checking futures v0.3.26 [INFO] [stderr] Checking bstr v0.2.17 [INFO] [stderr] Checking multimap v0.8.3 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking bincode v1.3.3 [INFO] [stderr] Checking csv v1.1.6 [INFO] [stderr] Checking bigtools v0.1.11 [INFO] [stderr] Checking statrs v0.16.0 [INFO] [stderr] Checking bio v1.1.0 [INFO] [stderr] Checking bigwig2bam v0.1.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: field `cal_prefix` is never read [INFO] [stdout] --> src/bamgen.rs:19:5 [INFO] [stdout] | [INFO] [stdout] 16 | pub struct Bam { [INFO] [stdout] | --- field in this struct [INFO] [stdout] ... [INFO] [stdout] 19 | cal_prefix: String, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `add_list_read` and `add_reads` are never used [INFO] [stdout] --> src/bamgen.rs:110:12 [INFO] [stdout] | [INFO] [stdout] 22 | impl Bam { [INFO] [stdout] | -------- methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 110 | pub fn add_list_read(&mut self, reads: &Vec) { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 119 | pub fn add_reads(&mut self, reads: (Read, Read)) { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `BamCache` is never constructed [INFO] [stdout] --> src/bamgen.rs:142:12 [INFO] [stdout] | [INFO] [stdout] 142 | pub struct BamCache { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `cal_prefix` is never read [INFO] [stdout] --> src/bamgen.rs:19:5 [INFO] [stdout] | [INFO] [stdout] 16 | pub struct Bam { [INFO] [stdout] | --- field in this struct [INFO] [stdout] ... [INFO] [stdout] 19 | cal_prefix: String, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated items `new`, `cache`, `flush_entry`, `flush`, `add_reads`, and `close` are never used [INFO] [stdout] --> src/bamgen.rs:155:12 [INFO] [stdout] | [INFO] [stdout] 147 | impl BamCache { [INFO] [stdout] | ------------- associated items in this implementation [INFO] [stdout] ... [INFO] [stdout] 155 | pub fn new(fasta: &str, bam_file: &str, cal_prefix: &str) -> BamCache { [INFO] [stdout] | ^^^ [INFO] [stdout] ... [INFO] [stdout] 165 | fn cache(&mut self, read: Read) { [INFO] [stdout] | ^^^^^ [INFO] [stdout] ... [INFO] [stdout] 189 | fn flush_entry(&mut self, chr_id: u32, chr_pos: u32) { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 202 | fn flush(&mut self, chr_id: u32, chr_pos: u32) { [INFO] [stdout] | ^^^^^ [INFO] [stdout] ... [INFO] [stdout] 218 | pub fn add_reads(&mut self, reads: (Read, Read)) { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 229 | pub fn close(&mut self) { [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `chr_len` is never used [INFO] [stdout] --> src/bigwig.rs:83:12 [INFO] [stdout] | [INFO] [stdout] 17 | impl Coverage { [INFO] [stdout] | ------------- method in this implementation [INFO] [stdout] ... [INFO] [stdout] 83 | pub fn chr_len(&self) -> u32 { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `next_pos` is never used [INFO] [stdout] --> src/bigwig.rs:170:8 [INFO] [stdout] | [INFO] [stdout] 143 | impl Depths { [INFO] [stdout] | ----------- method in this implementation [INFO] [stdout] ... [INFO] [stdout] 170 | fn next_pos(&mut self) { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `add_list_read` and `add_reads` are never used [INFO] [stdout] --> src/bamgen.rs:110:12 [INFO] [stdout] | [INFO] [stdout] 22 | impl Bam { [INFO] [stdout] | -------- methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 110 | pub fn add_list_read(&mut self, reads: &Vec) { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 119 | pub fn add_reads(&mut self, reads: (Read, Read)) { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `chr_pos` and `paired` are never read [INFO] [stdout] --> src/read.rs:26:5 [INFO] [stdout] | [INFO] [stdout] 21 | pub struct Fragments { [INFO] [stdout] | --------- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 26 | chr_pos: u32, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 31 | paired: bool, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `BamCache` is never constructed [INFO] [stdout] --> src/bamgen.rs:142:12 [INFO] [stdout] | [INFO] [stdout] 142 | pub struct BamCache { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `get` is never used [INFO] [stdout] --> src/read.rs:170:12 [INFO] [stdout] | [INFO] [stdout] 34 | impl Fragments { [INFO] [stdout] | -------------- method in this implementation [INFO] [stdout] ... [INFO] [stdout] 170 | pub fn get(&mut self, chr_id: u32, chr_pos: u32) -> (Read, Read) { [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `empty` is never used [INFO] [stdout] --> src/read.rs:256:12 [INFO] [stdout] | [INFO] [stdout] 252 | impl Read { [INFO] [stdout] | --------- associated function in this implementation [INFO] [stdout] ... [INFO] [stdout] 256 | pub fn empty() -> Read { [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated items `new`, `cache`, `flush_entry`, `flush`, `add_reads`, and `close` are never used [INFO] [stdout] --> src/bamgen.rs:155:12 [INFO] [stdout] | [INFO] [stdout] 147 | impl BamCache { [INFO] [stdout] | ------------- associated items in this implementation [INFO] [stdout] ... [INFO] [stdout] 155 | pub fn new(fasta: &str, bam_file: &str, cal_prefix: &str) -> BamCache { [INFO] [stdout] | ^^^ [INFO] [stdout] ... [INFO] [stdout] 165 | fn cache(&mut self, read: Read) { [INFO] [stdout] | ^^^^^ [INFO] [stdout] ... [INFO] [stdout] 189 | fn flush_entry(&mut self, chr_id: u32, chr_pos: u32) { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 202 | fn flush(&mut self, chr_id: u32, chr_pos: u32) { [INFO] [stdout] | ^^^^^ [INFO] [stdout] ... [INFO] [stdout] 218 | pub fn add_reads(&mut self, reads: (Read, Read)) { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 229 | pub fn close(&mut self) { [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `chr_len` is never used [INFO] [stdout] --> src/bigwig.rs:83:12 [INFO] [stdout] | [INFO] [stdout] 17 | impl Coverage { [INFO] [stdout] | ------------- method in this implementation [INFO] [stdout] ... [INFO] [stdout] 83 | pub fn chr_len(&self) -> u32 { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `next_pos` is never used [INFO] [stdout] --> src/bigwig.rs:170:8 [INFO] [stdout] | [INFO] [stdout] 143 | impl Depths { [INFO] [stdout] | ----------- method in this implementation [INFO] [stdout] ... [INFO] [stdout] 170 | fn next_pos(&mut self) { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `chr_pos` and `paired` are never read [INFO] [stdout] --> src/read.rs:26:5 [INFO] [stdout] | [INFO] [stdout] 21 | pub struct Fragments { [INFO] [stdout] | --------- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 26 | chr_pos: u32, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 31 | paired: bool, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `get` is never used [INFO] [stdout] --> src/read.rs:170:12 [INFO] [stdout] | [INFO] [stdout] 34 | impl Fragments { [INFO] [stdout] | -------------- method in this implementation [INFO] [stdout] ... [INFO] [stdout] 170 | pub fn get(&mut self, chr_id: u32, chr_pos: u32) -> (Read, Read) { [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `empty` is never used [INFO] [stdout] --> src/read.rs:256:12 [INFO] [stdout] | [INFO] [stdout] 252 | impl Read { [INFO] [stdout] | --------- associated function in this implementation [INFO] [stdout] ... [INFO] [stdout] 256 | pub fn empty() -> Read { [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 9 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 9 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 29.04s [INFO] running `Command { std: "docker" "inspect" "b9426a6c6f226a8ac36a1656d6de24bc95df4feea91019e7d7814342f801a498", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b9426a6c6f226a8ac36a1656d6de24bc95df4feea91019e7d7814342f801a498", kill_on_drop: false }` [INFO] [stdout] b9426a6c6f226a8ac36a1656d6de24bc95df4feea91019e7d7814342f801a498