[INFO] cloning repository https://github.com/joyliu-q/rust-genomics [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/joyliu-q/rust-genomics" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjoyliu-q%2Frust-genomics", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjoyliu-q%2Frust-genomics'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] a62b7e31b41dd1efe396e5ee25b420c4b5bdb887 [INFO] checking joyliu-q/rust-genomics against master#e29821ff85a2a3000d226f99f62f89464028d5d6 for pr-111505 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjoyliu-q%2Frust-genomics" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/joyliu-q/rust-genomics on toolchain e29821ff85a2a3000d226f99f62f89464028d5d6 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+e29821ff85a2a3000d226f99f62f89464028d5d6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/joyliu-q/rust-genomics [INFO] finished tweaking git repo https://github.com/joyliu-q/rust-genomics [INFO] tweaked toml for git repo https://github.com/joyliu-q/rust-genomics written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/joyliu-q/rust-genomics already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+e29821ff85a2a3000d226f99f62f89464028d5d6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:19e73879b68f455e41552ea35293514db52ea292d993f571636dbffedb77a1ee" "/opt/rustwide/cargo-home/bin/cargo" "+e29821ff85a2a3000d226f99f62f89464028d5d6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 701a9e8c8d605ee35a54ba00c9982afefb17992c96aa7b6feee027899a8a2e5c [INFO] running `Command { std: "docker" "start" "-a" "701a9e8c8d605ee35a54ba00c9982afefb17992c96aa7b6feee027899a8a2e5c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "701a9e8c8d605ee35a54ba00c9982afefb17992c96aa7b6feee027899a8a2e5c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "701a9e8c8d605ee35a54ba00c9982afefb17992c96aa7b6feee027899a8a2e5c", kill_on_drop: false }` [INFO] [stdout] 701a9e8c8d605ee35a54ba00c9982afefb17992c96aa7b6feee027899a8a2e5c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:19e73879b68f455e41552ea35293514db52ea292d993f571636dbffedb77a1ee" "/opt/rustwide/cargo-home/bin/cargo" "+e29821ff85a2a3000d226f99f62f89464028d5d6" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 383985b998c8e639550d4046d7ebe269876a3da9aa38cb82e3e189f0855d8825 [INFO] running `Command { std: "docker" "start" "-a" "383985b998c8e639550d4046d7ebe269876a3da9aa38cb82e3e189f0855d8825", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.79 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling memoffset v0.5.6 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling serde v1.0.117 [INFO] [stderr] Compiling rayon-core v1.8.1 [INFO] [stderr] Compiling getrandom v0.1.15 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Compiling rayon v1.4.1 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Checking itoa v0.4.6 [INFO] [stderr] Checking ppv-lite86 v0.2.9 [INFO] [stderr] Compiling syn v1.0.45 [INFO] [stderr] Compiling serde_json v1.0.59 [INFO] [stderr] Checking crossbeam-channel v0.4.4 [INFO] [stderr] Checking regex-automata v0.1.9 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Compiling serde_derive v1.0.117 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking itertools v0.9.0 [INFO] [stderr] Checking regex-syntax v0.6.20 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking half v1.6.0 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Checking plotters v0.2.15 [INFO] [stderr] Checking criterion-plot v0.4.3 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking regex v1.4.1 [INFO] [stderr] Checking oorandom v11.1.2 [INFO] [stderr] Checking bstr v0.2.14 [INFO] [stderr] Checking serde_cbor v0.11.1 [INFO] [stderr] Checking rust-genomics v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Checking csv v1.1.3 [INFO] [stdout] warning: unused imports: `damerau_levenshtein`, `hamming`, `jaro_winkler`, `jaro`, `levenshtein`, `normalized_damerau_levenshtein`, `osa_distance`, `sorensen_dice` [INFO] [stdout] --> src/lib.rs:13:14 [INFO] [stdout] | [INFO] [stdout] 13 | use strsim::{hamming, levenshtein, normalized_levenshtein, osa_distance, [INFO] [stdout] | ^^^^^^^ ^^^^^^^^^^^ ^^^^^^^^^^^^ [INFO] [stdout] 14 | damerau_levenshtein, normalized_damerau_levenshtein, jaro, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^ [INFO] [stdout] 15 | jaro_winkler, sorensen_dice}; [INFO] [stdout] | ^^^^^^^^^^^^ ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Write` [INFO] [stdout] --> src/lib.rs:7:15 [INFO] [stdout] | [INFO] [stdout] 7 | use std::io::{Write, BufReader, BufRead}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/lib.rs:259:13 [INFO] [stdout] | [INFO] [stdout] 259 | let mut diff = 0; [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `Nucleotide` is never used [INFO] [stdout] --> src/lib.rs:23:6 [INFO] [stdout] | [INFO] [stdout] 23 | enum Nucleotide { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated items `to_char` and `index_to_nt` are never used [INFO] [stdout] --> src/lib.rs:30:8 [INFO] [stdout] | [INFO] [stdout] 29 | impl Nucleotide { [INFO] [stdout] | --------------- associated items in this implementation [INFO] [stdout] 30 | fn to_char(&self) -> char { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 38 | fn index_to_nt(index: usize) -> Result { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `check` is never used [INFO] [stdout] --> src/lib.rs:84:8 [INFO] [stdout] | [INFO] [stdout] 68 | impl Sequence { [INFO] [stdout] | ------------- method in this implementation [INFO] [stdout] ... [INFO] [stdout] 84 | fn check(&self) -> bool { [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/lib.rs:309:9 [INFO] [stdout] | [INFO] [stdout] 309 | write!(f, "File Name: {}\n", self.name); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this warning originates in the macro `write` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/lib.rs:311:13 [INFO] [stdout] | [INFO] [stdout] 311 | write!(f, "Header: {}\nSequence: {}\n\n", record.header, record.sequence); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] = note: this warning originates in the macro `write` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 8 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Sequence` [INFO] [stdout] --> src/main.rs:1:21 [INFO] [stdout] | [INFO] [stdout] 1 | use rust_genomics::{Sequence, FASTA}; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Checking tinytemplate v1.1.0 [INFO] [stderr] Checking criterion v0.3.3 [INFO] [stdout] warning: unused imports: `damerau_levenshtein`, `hamming`, `jaro_winkler`, `jaro`, `levenshtein`, `normalized_damerau_levenshtein`, `osa_distance`, `sorensen_dice` [INFO] [stdout] --> src/lib.rs:13:14 [INFO] [stdout] | [INFO] [stdout] 13 | use strsim::{hamming, levenshtein, normalized_levenshtein, osa_distance, [INFO] [stdout] | ^^^^^^^ ^^^^^^^^^^^ ^^^^^^^^^^^^ [INFO] [stdout] 14 | damerau_levenshtein, normalized_damerau_levenshtein, jaro, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^ [INFO] [stdout] 15 | jaro_winkler, sorensen_dice}; [INFO] [stdout] | ^^^^^^^^^^^^ ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Sequence` [INFO] [stdout] --> src/main.rs:1:21 [INFO] [stdout] | [INFO] [stdout] 1 | use rust_genomics::{Sequence, FASTA}; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `BenchmarkId`, `black_box` [INFO] [stdout] --> benches/my_benchmark.rs:1:17 [INFO] [stdout] | [INFO] [stdout] 1 | use criterion::{black_box, criterion_group, criterion_main, Criterion, BenchmarkId}; [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Sequence` [INFO] [stdout] --> benches/my_benchmark.rs:2:21 [INFO] [stdout] | [INFO] [stdout] 2 | use rust_genomics::{Sequence, FASTA}; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Write` [INFO] [stdout] --> src/lib.rs:7:15 [INFO] [stdout] | [INFO] [stdout] 7 | use std::io::{Write, BufReader, BufRead}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/lib.rs:259:13 [INFO] [stdout] | [INFO] [stdout] 259 | let mut diff = 0; [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `Nucleotide` is never used [INFO] [stdout] --> src/lib.rs:23:6 [INFO] [stdout] | [INFO] [stdout] 23 | enum Nucleotide { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated items `to_char` and `index_to_nt` are never used [INFO] [stdout] --> src/lib.rs:30:8 [INFO] [stdout] | [INFO] [stdout] 29 | impl Nucleotide { [INFO] [stdout] | --------------- associated items in this implementation [INFO] [stdout] 30 | fn to_char(&self) -> char { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 38 | fn index_to_nt(index: usize) -> Result { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `check` is never used [INFO] [stdout] --> src/lib.rs:84:8 [INFO] [stdout] | [INFO] [stdout] 68 | impl Sequence { [INFO] [stdout] | ------------- method in this implementation [INFO] [stdout] ... [INFO] [stdout] 84 | fn check(&self) -> bool { [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/lib.rs:309:9 [INFO] [stdout] | [INFO] [stdout] 309 | write!(f, "File Name: {}\n", self.name); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this warning originates in the macro `write` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/lib.rs:311:13 [INFO] [stdout] | [INFO] [stdout] 311 | write!(f, "Header: {}\nSequence: {}\n\n", record.header, record.sequence); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] = note: this warning originates in the macro `write` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 8 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 11.94s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: criterion v0.3.3 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2` [INFO] running `Command { std: "docker" "inspect" "383985b998c8e639550d4046d7ebe269876a3da9aa38cb82e3e189f0855d8825", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "383985b998c8e639550d4046d7ebe269876a3da9aa38cb82e3e189f0855d8825", kill_on_drop: false }` [INFO] [stdout] 383985b998c8e639550d4046d7ebe269876a3da9aa38cb82e3e189f0855d8825