[INFO] fetching crate sigalign 0.2.0... [INFO] checking sigalign-0.2.0 against master#5b82ea74b705799665b5a676b162f30d26f5108c for pr-102129 [INFO] extracting crate sigalign 0.2.0 into /workspace/builds/worker-1/source [INFO] validating manifest of crates.io crate sigalign 0.2.0 on toolchain 5b82ea74b705799665b5a676b162f30d26f5108c [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5b82ea74b705799665b5a676b162f30d26f5108c" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate sigalign 0.2.0 [INFO] finished tweaking crates.io crate sigalign 0.2.0 [INFO] tweaked toml for crates.io crate sigalign 0.2.0 written to /workspace/builds/worker-1/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5b82ea74b705799665b5a676b162f30d26f5108c" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5b82ea74b705799665b5a676b162f30d26f5108c" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded strum v0.23.0 [INFO] [stderr] Downloaded capwriter v0.1.3 [INFO] [stderr] Downloaded strum_macros v0.23.1 [INFO] [stderr] Downloaded lt-fm-index v0.5.6 [INFO] [stderr] Downloaded getset v0.1.2 [INFO] [stderr] Downloaded bio v0.39.2 [INFO] [stderr] Downloaded faimm v0.3.0 [INFO] [stderr] Downloaded enum-map-derive v0.6.0 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded memmap2 v0.3.1 [INFO] [stderr] Downloaded seq_io v0.3.1 [INFO] [stderr] Downloaded libdivsufsort-rs v0.1.1 [INFO] [stderr] Downloaded enum-map v1.1.1 [INFO] [stderr] Downloaded fid v0.1.7 [INFO] [stderr] Downloaded fm-index v0.1.2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:bb5b0feb4f87116a4ea905b7ff5bf5b85913db05e9f0fbc1abdd3168928d9075" "/opt/rustwide/cargo-home/bin/cargo" "+5b82ea74b705799665b5a676b162f30d26f5108c" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 0e8564c67d1341ec4408c8fa84448cccb2ff7950e58ea9a4d31f850db84b4917 [INFO] running `Command { std: "docker" "start" "-a" "0e8564c67d1341ec4408c8fa84448cccb2ff7950e58ea9a4d31f850db84b4917", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "0e8564c67d1341ec4408c8fa84448cccb2ff7950e58ea9a4d31f850db84b4917", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0e8564c67d1341ec4408c8fa84448cccb2ff7950e58ea9a4d31f850db84b4917", kill_on_drop: false }` [INFO] [stdout] 0e8564c67d1341ec4408c8fa84448cccb2ff7950e58ea9a4d31f850db84b4917 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:bb5b0feb4f87116a4ea905b7ff5bf5b85913db05e9f0fbc1abdd3168928d9075" "/opt/rustwide/cargo-home/bin/cargo" "+5b82ea74b705799665b5a676b162f30d26f5108c" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0e39bf3500beebc60876824c42fdbd2a10ef6023a17c743b66a3aa876092d5f1 [INFO] running `Command { std: "docker" "start" "-a" "0e39bf3500beebc60876824c42fdbd2a10ef6023a17c743b66a3aa876092d5f1", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.1.0 [INFO] [stderr] Compiling proc-macro2 v1.0.47 [INFO] [stderr] Compiling unicode-ident v1.0.5 [INFO] [stderr] Compiling quote v1.0.21 [INFO] [stderr] Compiling syn v1.0.103 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling libc v0.2.137 [INFO] [stderr] Compiling libm v0.2.6 [INFO] [stderr] Compiling version_check v0.9.4 [INFO] [stderr] Compiling serde_derive v1.0.147 [INFO] [stderr] Compiling serde v1.0.147 [INFO] [stderr] Compiling memchr v2.5.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.12 [INFO] [stderr] Checking once_cell v1.16.0 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Checking ppv-lite86 v0.2.17 [INFO] [stderr] Compiling rustversion v1.0.9 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Checking either v1.8.0 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking ryu v1.0.11 [INFO] [stderr] Compiling typenum v1.15.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking matrixmultiply v0.3.2 [INFO] [stderr] Compiling thiserror v1.0.37 [INFO] [stderr] Checking regex-automata v0.1.10 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling paste v1.0.9 [INFO] [stderr] Compiling ahash v0.7.6 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling num-traits v0.2.15 [INFO] [stderr] Compiling num-integer v0.1.45 [INFO] [stderr] Compiling memoffset v0.6.5 [INFO] [stderr] Compiling num-bigint v0.4.3 [INFO] [stderr] Compiling crossbeam-epoch v0.9.11 [INFO] [stderr] Compiling num-rational v0.4.1 [INFO] [stderr] Compiling indexmap v1.9.1 [INFO] [stderr] Checking aho-corasick v0.7.19 [INFO] [stderr] Checking crossbeam-channel v0.5.6 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling cc v1.0.76 [INFO] [stderr] Compiling anyhow v1.0.66 [INFO] [stderr] Checking regex-syntax v0.6.28 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Checking getrandom v0.2.8 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Checking crossbeam-deque v0.8.2 [INFO] [stderr] Checking itertools v0.10.5 [INFO] [stderr] Checking byteorder v1.4.3 [INFO] [stderr] Compiling cmake v0.1.49 [INFO] [stderr] Checking hashbrown v0.12.3 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Compiling rayon-core v1.9.3 [INFO] [stderr] Compiling heck v0.4.0 [INFO] [stderr] Compiling unicode-segmentation v1.10.0 [INFO] [stderr] Compiling serde_json v1.0.87 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Compiling crossbeam-queue v0.3.6 [INFO] [stderr] Checking itoa v0.4.8 [INFO] [stderr] Checking num-complex v0.4.2 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Compiling heck v0.3.3 [INFO] [stderr] Compiling num-iter v0.1.43 [INFO] [stderr] Checking fixedbitset v0.4.2 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Checking itoa v1.0.4 [INFO] [stderr] Compiling fid v0.1.7 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking bit-set v0.5.3 [INFO] [stderr] Checking ordered-float v1.1.1 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking num_cpus v1.14.0 [INFO] [stderr] Compiling rayon v1.5.3 [INFO] [stderr] Compiling ahash v0.8.2 [INFO] [stderr] Checking unicode-width v0.1.10 [INFO] [stderr] Checking strum v0.23.0 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking bytecount v0.6.3 [INFO] [stderr] Checking plotters-backend v0.3.4 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking safemem v0.3.3 [INFO] [stderr] Checking simba v0.5.1 [INFO] [stderr] Checking ndarray v0.15.6 [INFO] [stderr] Checking buf_redux v0.8.4 [INFO] [stderr] Checking petgraph v0.6.2 [INFO] [stderr] Checking textwrap v0.11.0 [INFO] [stderr] Checking crossbeam v0.8.2 [INFO] [stderr] Checking plotters-svg v0.3.3 [INFO] [stderr] Checking memmap2 v0.3.1 [INFO] [stderr] Checking scoped_threadpool v0.1.9 [INFO] [stderr] Checking bitflags v1.3.2 [INFO] [stderr] Checking half v1.8.2 [INFO] [stderr] Checking same-file v1.0.6 [INFO] [stderr] Checking cast v0.3.0 [INFO] [stderr] Checking plotters v0.3.4 [INFO] [stderr] Checking clap v2.34.0 [INFO] [stderr] Compiling libdivsufsort-rs v0.1.1 [INFO] [stderr] Checking faimm v0.3.0 [INFO] [stderr] Checking walkdir v2.3.2 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking criterion-plot v0.4.5 [INFO] [stderr] Checking oorandom v11.1.3 [INFO] [stderr] Checking regex v1.7.0 [INFO] [stderr] Checking num v0.4.0 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling thiserror-impl v1.0.37 [INFO] [stderr] Compiling strum_macros v0.24.3 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling bytemuck_derive v1.3.0 [INFO] [stderr] Compiling enum-map-derive v0.6.0 [INFO] [stderr] Compiling strum_macros v0.23.1 [INFO] [stderr] Compiling getset v0.1.2 [INFO] [stderr] Checking enum-map v1.1.1 [INFO] [stderr] Checking nalgebra v0.27.1 [INFO] [stderr] Checking bytemuck v1.12.3 [INFO] [stderr] Checking capwriter v0.1.3 [INFO] [stderr] Checking bio-types v0.13.0 [INFO] [stderr] Checking bstr v0.2.17 [INFO] [stderr] Checking multimap v0.8.3 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking seq_io v0.3.1 [INFO] [stderr] Checking serde_cbor v0.11.2 [INFO] [stderr] Checking fm-index v0.1.2 [INFO] [stderr] Checking csv v1.1.6 [INFO] [stderr] Checking tinytemplate v1.2.1 [INFO] [stderr] Checking criterion v0.3.6 [INFO] [stderr] Checking statrs v0.15.0 [INFO] [stderr] Checking bio v0.39.2 [INFO] [stderr] Checking lt-fm-index v0.5.6 [INFO] [stderr] Checking sigalign v0.2.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `FastaAlignmentResult` [INFO] [stdout] --> benches/test_data/mod.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | FastaAlignmentResult, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] help: consider adding a `#[cfg(test)]` to the containing module [INFO] [stdout] --> benches/benchmark.rs:5:1 [INFO] [stdout] | [INFO] [stdout] 5 | mod test_data; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `InMemoryStorage` [INFO] [stdout] --> benches/test_data/mod.rs:6:34 [INFO] [stdout] | [INFO] [stdout] 6 | use sigalign::sequence_storage::{InMemoryStorage, InMemoryRcStorage}; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] help: consider adding a `#[cfg(test)]` to the containing module [INFO] [stdout] --> benches/benchmark.rs:5:1 [INFO] [stdout] | [INFO] [stdout] 5 | mod test_data; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `BenchmarkId`, `criterion_group`, `criterion_main` [INFO] [stdout] --> benches/to_json/mod.rs:2:16 [INFO] [stdout] | [INFO] [stdout] 2 | black_box, criterion_group, criterion_main, Criterion, BenchmarkId [INFO] [stdout] | ^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^ ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 22.50s [INFO] running `Command { std: "docker" "inspect" "0e39bf3500beebc60876824c42fdbd2a10ef6023a17c743b66a3aa876092d5f1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0e39bf3500beebc60876824c42fdbd2a10ef6023a17c743b66a3aa876092d5f1", kill_on_drop: false }` [INFO] [stdout] 0e39bf3500beebc60876824c42fdbd2a10ef6023a17c743b66a3aa876092d5f1