[INFO] fetching crate biodiff 1.0.3... [INFO] checking biodiff-1.0.3 against master#406e03fd02faf5cc8409a8b6b04c26990d6227e6 for pr-101437 [INFO] extracting crate biodiff 1.0.3 into /workspace/builds/worker-6/source [INFO] validating manifest of crates.io crate biodiff 1.0.3 on toolchain 406e03fd02faf5cc8409a8b6b04c26990d6227e6 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+406e03fd02faf5cc8409a8b6b04c26990d6227e6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate biodiff 1.0.3 [INFO] finished tweaking crates.io crate biodiff 1.0.3 [INFO] tweaked toml for crates.io crate biodiff 1.0.3 written to /workspace/builds/worker-6/source/Cargo.toml [INFO] crate crates.io crate biodiff 1.0.3 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+406e03fd02faf5cc8409a8b6b04c26990d6227e6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded enum-map v1.1.1 [INFO] [stderr] Downloaded enum-map-derive v0.6.0 [INFO] [stderr] Downloaded memmap2 v0.5.5 [INFO] [stderr] Downloaded libm v0.2.2 [INFO] [stderr] Downloaded cursive_core v0.3.4 [INFO] [stderr] Downloaded time v0.3.11 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded simba v0.5.1 [INFO] [stderr] Downloaded nalgebra v0.27.1 [INFO] [stderr] Downloaded bio-types v0.12.1 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded ndarray v0.15.4 [INFO] [stderr] Downloaded cursive v0.19.0 [INFO] [stderr] Downloaded enum-map-derive v0.9.0 [INFO] [stderr] Downloaded bio v0.41.0 [INFO] [stderr] Downloaded cursive_buffered_backend v0.6.0 [INFO] [stderr] Downloaded hexagex v0.2.1 [INFO] [stderr] Downloaded enum-map v2.4.0 [INFO] [stderr] Downloaded crossterm v0.24.0 [INFO] [stderr] Downloaded rustversion v1.0.8 [INFO] [stderr] Downloaded enumset v1.0.11 [INFO] [stderr] Downloaded statrs v0.15.0 [INFO] [stderr] Downloaded realfft v3.0.0 [INFO] [stderr] Downloaded enumset_derive v0.6.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:824c28ce115f6b999260af6986f3384c158e782489540e41c0b698ca1d9fd927" "/opt/rustwide/cargo-home/bin/cargo" "+406e03fd02faf5cc8409a8b6b04c26990d6227e6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 902ae38c2182d8b94d93ad006bdabd2f3bf30df34e667863cfd3c8a2364ab88a [INFO] running `Command { std: "docker" "start" "-a" "902ae38c2182d8b94d93ad006bdabd2f3bf30df34e667863cfd3c8a2364ab88a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "902ae38c2182d8b94d93ad006bdabd2f3bf30df34e667863cfd3c8a2364ab88a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "902ae38c2182d8b94d93ad006bdabd2f3bf30df34e667863cfd3c8a2364ab88a", kill_on_drop: false }` [INFO] [stdout] 902ae38c2182d8b94d93ad006bdabd2f3bf30df34e667863cfd3c8a2364ab88a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:824c28ce115f6b999260af6986f3384c158e782489540e41c0b698ca1d9fd927" "/opt/rustwide/cargo-home/bin/cargo" "+406e03fd02faf5cc8409a8b6b04c26990d6227e6" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 708268901d8c1c3e5f18a21538103a467c4df604a0513b3a9d8126038e239860 [INFO] running `Command { std: "docker" "start" "-a" "708268901d8c1c3e5f18a21538103a467c4df604a0513b3a9d8126038e239860", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling autocfg v1.1.0 [INFO] [stderr] Compiling proc-macro2 v1.0.40 [INFO] [stderr] Compiling quote v1.0.20 [INFO] [stderr] Compiling unicode-ident v1.0.2 [INFO] [stderr] Compiling syn v1.0.98 [INFO] [stderr] Compiling libc v0.2.126 [INFO] [stderr] Compiling libm v0.2.2 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling version_check v0.9.4 [INFO] [stderr] Compiling serde_derive v1.0.140 [INFO] [stderr] Compiling memchr v2.5.0 [INFO] [stderr] Compiling serde v1.0.140 [INFO] [stderr] Compiling ident_case v1.0.1 [INFO] [stderr] Compiling fnv v1.0.7 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling log v0.4.17 [INFO] [stderr] Checking ppv-lite86 v0.2.16 [INFO] [stderr] Checking once_cell v1.13.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.10 [INFO] [stderr] Compiling typenum v1.15.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling rustversion v1.0.8 [INFO] [stderr] Compiling parking_lot_core v0.9.3 [INFO] [stderr] Checking itoa v1.0.2 [INFO] [stderr] Checking smallvec v1.9.0 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling signal-hook v0.3.14 [INFO] [stderr] Compiling unicode-segmentation v1.9.0 [INFO] [stderr] Compiling paste v1.0.7 [INFO] [stderr] Checking stable_deref_trait v1.2.0 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Checking regex-syntax v0.6.27 [INFO] [stderr] Checking num_threads v0.1.6 [INFO] [stderr] Checking strength_reduce v0.2.3 [INFO] [stderr] Compiling anyhow v1.0.58 [INFO] [stderr] Checking unicode-width v0.1.9 [INFO] [stderr] Checking hashbrown v0.12.3 [INFO] [stderr] Checking xi-unicode v0.3.0 [INFO] [stderr] Checking ryu v1.0.10 [INFO] [stderr] Checking regex-automata v0.1.10 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Checking bitflags v1.3.2 [INFO] [stderr] Checking either v1.7.0 [INFO] [stderr] Checking byteorder v1.4.3 [INFO] [stderr] Compiling serde_json v1.0.82 [INFO] [stderr] Checking itoa v0.4.8 [INFO] [stderr] Checking fixedbitset v0.4.2 [INFO] [stderr] Checking bytecount v0.6.3 [INFO] [stderr] Checking strum v0.23.0 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking owning_ref v0.4.1 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling heck v0.3.3 [INFO] [stderr] Compiling num-traits v0.2.15 [INFO] [stderr] Compiling num-integer v0.1.45 [INFO] [stderr] Compiling num-rational v0.4.1 [INFO] [stderr] Compiling num-iter v0.1.43 [INFO] [stderr] Compiling lock_api v0.4.7 [INFO] [stderr] Compiling indexmap v1.9.1 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling ahash v0.7.6 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Checking itertools v0.10.3 [INFO] [stderr] Checking bit-set v0.5.2 [INFO] [stderr] Checking matrixmultiply v0.3.2 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking crossbeam-channel v0.5.5 [INFO] [stderr] Checking getrandom v0.2.7 [INFO] [stderr] Checking signal-hook-registry v1.4.0 [INFO] [stderr] Checking time v0.3.11 [INFO] [stderr] Checking dirs-sys v0.3.7 [INFO] [stderr] Checking memmap2 v0.5.5 [INFO] [stderr] Checking num_cpus v1.13.1 [INFO] [stderr] Checking mio v0.8.4 [INFO] [stderr] Checking rand_core v0.6.3 [INFO] [stderr] Checking dirs v4.0.0 [INFO] [stderr] Checking parking_lot v0.12.1 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking signal-hook-mio v0.2.3 [INFO] [stderr] Checking crossterm v0.24.0 [INFO] [stderr] Checking aho-corasick v0.7.18 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Checking num-complex v0.4.2 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking ordered-float v1.1.1 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking primal-check v0.3.1 [INFO] [stderr] Checking transpose v0.2.1 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking regex v1.6.0 [INFO] [stderr] Checking simba v0.5.1 [INFO] [stderr] Checking rustfft v6.0.1 [INFO] [stderr] Checking ndarray v0.15.4 [INFO] [stderr] Checking num v0.4.0 [INFO] [stderr] Checking hexagex v0.2.1 [INFO] [stderr] Checking petgraph v0.6.2 [INFO] [stderr] Compiling darling_core v0.13.4 [INFO] [stderr] Compiling enum-map-derive v0.9.0 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling thiserror-impl v1.0.31 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling enum-map-derive v0.6.0 [INFO] [stderr] Compiling strum_macros v0.23.1 [INFO] [stderr] Compiling getset v0.1.2 [INFO] [stderr] Compiling darling_macro v0.13.4 [INFO] [stderr] Checking realfft v3.0.0 [INFO] [stderr] Checking enum-map v1.1.1 [INFO] [stderr] Checking enum-map v2.4.0 [INFO] [stderr] Checking nalgebra v0.27.1 [INFO] [stderr] Compiling darling v0.13.4 [INFO] [stderr] Compiling enumset_derive v0.6.0 [INFO] [stderr] Checking thiserror v1.0.31 [INFO] [stderr] Checking bio-types v0.12.1 [INFO] [stderr] Checking enumset v1.0.11 [INFO] [stderr] Checking cursive_core v0.3.4 [INFO] [stderr] Checking cursive v0.19.0 [INFO] [stderr] Checking cursive_buffered_backend v0.6.0 [INFO] [stderr] Checking bstr v0.2.17 [INFO] [stderr] Checking multimap v0.8.3 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking csv v1.1.6 [INFO] [stderr] Checking statrs v0.15.0 [INFO] [stderr] Checking bio v0.41.0 [INFO] [stderr] Checking biodiff v1.0.3 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 30.11s [INFO] running `Command { std: "docker" "inspect" "708268901d8c1c3e5f18a21538103a467c4df604a0513b3a9d8126038e239860", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "708268901d8c1c3e5f18a21538103a467c4df604a0513b3a9d8126038e239860", kill_on_drop: false }` [INFO] [stdout] 708268901d8c1c3e5f18a21538103a467c4df604a0513b3a9d8126038e239860