[INFO] fetching crate openbabel 0.3.5...
[INFO] testing openbabel-0.3.5 against master#acb8934fd57b3c2740c4abac0a5728c2c9b1423b for pr-101061-2
[INFO] extracting crate openbabel 0.3.5 into /workspace/builds/worker-3/source
[INFO] validating manifest of crates.io crate openbabel 0.3.5 on toolchain acb8934fd57b3c2740c4abac0a5728c2c9b1423b
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+acb8934fd57b3c2740c4abac0a5728c2c9b1423b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate openbabel 0.3.5
[INFO] removed 0 missing examples
[INFO] finished tweaking crates.io crate openbabel 0.3.5
[INFO] tweaked toml for crates.io crate openbabel 0.3.5 written to /workspace/builds/worker-3/source/Cargo.toml
[INFO] crate crates.io crate openbabel 0.3.5 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+acb8934fd57b3c2740c4abac0a5728c2c9b1423b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] [stderr]  Downloading crates ...
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:06bd2dc561ac9b9120e7d8112cca06cd3b1bded0ddb8515a4f6a39439d56c944" "/opt/rustwide/cargo-home/bin/cargo" "+acb8934fd57b3c2740c4abac0a5728c2c9b1423b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] b4a5164bb06823e35b10da5ff928a6a030c305ad3bde6f79ed4272a989d014b8
[INFO] running `Command { std: "docker" "start" "-a" "b4a5164bb06823e35b10da5ff928a6a030c305ad3bde6f79ed4272a989d014b8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b4a5164bb06823e35b10da5ff928a6a030c305ad3bde6f79ed4272a989d014b8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b4a5164bb06823e35b10da5ff928a6a030c305ad3bde6f79ed4272a989d014b8", kill_on_drop: false }`
[INFO] [stdout] b4a5164bb06823e35b10da5ff928a6a030c305ad3bde6f79ed4272a989d014b8
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:06bd2dc561ac9b9120e7d8112cca06cd3b1bded0ddb8515a4f6a39439d56c944" "/opt/rustwide/cargo-home/bin/cargo" "+acb8934fd57b3c2740c4abac0a5728c2c9b1423b" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 43e4c17edb6175530f265e51c567e1812e6b95a903d581f21477484f73f55a9b
[INFO] running `Command { std: "docker" "start" "-a" "43e4c17edb6175530f265e51c567e1812e6b95a903d581f21477484f73f55a9b", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling cc v1.0.73
[INFO] [stderr]    Compiling proc-macro2 v1.0.37
[INFO] [stderr]    Compiling unicode-xid v0.2.2
[INFO] [stderr]    Compiling syn v1.0.91
[INFO] [stderr]    Compiling scratch v1.0.1
[INFO] [stderr]    Compiling cxxbridge-flags v1.0.67
[INFO] [stderr]    Compiling termcolor v1.1.3
[INFO] [stderr]    Compiling unicode-width v0.1.9
[INFO] [stderr]    Compiling once_cell v1.12.0
[INFO] [stderr]    Compiling fs_extra v1.2.0
[INFO] [stderr]    Compiling chiral-db-fp-kind v0.1.0
[INFO] [stderr]    Compiling codespan-reporting v0.11.1
[INFO] [stderr]    Compiling quote v1.0.18
[INFO] [stderr]    Compiling link-cplusplus v1.0.6
[INFO] [stderr]    Compiling cxx v1.0.67
[INFO] [stderr]    Compiling cxx-build v1.0.68
[INFO] [stderr]    Compiling cxxbridge-macro v1.0.67
[INFO] [stderr]    Compiling openbabel-sys v0.1.8+openbabel-3.1.1
[INFO] [stderr]    Compiling openbabel v0.3.5 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 32s
[INFO] running `Command { std: "docker" "inspect" "43e4c17edb6175530f265e51c567e1812e6b95a903d581f21477484f73f55a9b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "43e4c17edb6175530f265e51c567e1812e6b95a903d581f21477484f73f55a9b", kill_on_drop: false }`
[INFO] [stdout] 43e4c17edb6175530f265e51c567e1812e6b95a903d581f21477484f73f55a9b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:06bd2dc561ac9b9120e7d8112cca06cd3b1bded0ddb8515a4f6a39439d56c944" "/opt/rustwide/cargo-home/bin/cargo" "+acb8934fd57b3c2740c4abac0a5728c2c9b1423b" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 877df68331999e6c947e1b1d372835be1aac4e4d5f18f6f0f9c4d023311039b5
[INFO] running `Command { std: "docker" "start" "-a" "877df68331999e6c947e1b1d372835be1aac4e4d5f18f6f0f9c4d023311039b5", kill_on_drop: false }`
[INFO] [stderr]    Compiling autocfg v1.1.0
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling libc v0.2.126
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling semver v1.0.9
[INFO] [stderr]    Compiling crossbeam-utils v0.8.8
[INFO] [stderr]    Compiling serde v1.0.137
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]    Compiling rayon-core v1.9.3
[INFO] [stderr]    Compiling scopeguard v1.1.0
[INFO] [stderr]    Compiling serde_json v1.0.81
[INFO] [stderr]    Compiling ryu v1.0.10
[INFO] [stderr]    Compiling either v1.6.1
[INFO] [stderr]    Compiling plotters-backend v0.3.2
[INFO] [stderr]    Compiling ppv-lite86 v0.2.16
[INFO] [stderr]    Compiling regex-automata v0.1.10
[INFO] [stderr]    Compiling serde_derive v1.0.137
[INFO] [stderr]    Compiling itoa v1.0.2
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[INFO] [stderr]    Compiling itertools v0.10.3
[INFO] [stderr]    Compiling half v1.8.2
[INFO] [stderr]    Compiling plotters-svg v0.3.1
[INFO] [stderr]    Compiling itoa v0.4.8
[INFO] [stderr]    Compiling regex-syntax v0.6.26
[INFO] [stderr]    Compiling bitflags v1.3.2
[INFO] [stderr]    Compiling same-file v1.0.6
[INFO] [stderr]    Compiling clap v2.34.0
[INFO] [stderr]    Compiling oorandom v11.1.3
[INFO] [stderr]    Compiling walkdir v2.3.2
[INFO] [stderr]    Compiling memoffset v0.6.5
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.8
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling rayon v1.5.3
[INFO] [stderr]    Compiling crossbeam-channel v0.5.4
[INFO] [stderr]    Compiling rustc_version v0.4.0
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling cast v0.2.7
[INFO] [stderr]    Compiling getrandom v0.2.7
[INFO] [stderr]    Compiling num_cpus v1.13.1
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling crossbeam-deque v0.8.1
[INFO] [stderr]    Compiling rand_core v0.6.3
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling regex v1.5.6
[INFO] [stderr]    Compiling criterion-plot v0.4.4
[INFO] [stderr]    Compiling plotters v0.3.1
[INFO] [stderr]    Compiling chiral-db-sources v0.2.0
[INFO] [stderr]    Compiling bstr v0.2.17
[INFO] [stderr]    Compiling serde_cbor v0.11.2
[INFO] [stderr]    Compiling csv v1.1.6
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling criterion v0.3.5
[INFO] [stderr]    Compiling openbabel v0.3.5 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 10.42s
[INFO] running `Command { std: "docker" "inspect" "877df68331999e6c947e1b1d372835be1aac4e4d5f18f6f0f9c4d023311039b5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "877df68331999e6c947e1b1d372835be1aac4e4d5f18f6f0f9c4d023311039b5", kill_on_drop: false }`
[INFO] [stdout] 877df68331999e6c947e1b1d372835be1aac4e4d5f18f6f0f9c4d023311039b5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:06bd2dc561ac9b9120e7d8112cca06cd3b1bded0ddb8515a4f6a39439d56c944" "/opt/rustwide/cargo-home/bin/cargo" "+acb8934fd57b3c2740c4abac0a5728c2c9b1423b" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] e7372e7fe7b3ee8e976eb6d9d646f2f29923bcc6d184be12032c2da5e74c267c
[INFO] running `Command { std: "docker" "start" "-a" "e7372e7fe7b3ee8e976eb6d9d646f2f29923bcc6d184be12032c2da5e74c267c", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.05s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/openbabel-567b8fa8ef4909da)
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test molecule::test_mod_molecule::test_molecule ... ok
[INFO] [stdout] test smartspattern::test_mod_smartspattern::test_match ... ok
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in ReadPatternFile
[INFO] [stderr]   Cannot open patterns.txt
[INFO] [stderr] 
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in ReadPatternFile
[INFO] [stderr]   Cannot open patterns.txt
[INFO] [stderr] 
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in ReadPatternFile
[INFO] [stderr]   Cannot open SMARTS_InteLigand.txt
[INFO] [stderr] 
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in ReadPatternFile
[INFO] [stderr]   Cannot open patterns.txt
[INFO] [stderr] 
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in ReadPatternFile
[INFO] [stderr]   Cannot open SMARTS_InteLigand.txt
[INFO] [stderr] 
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in ReadPatternFile
[INFO] [stderr]   Cannot open SMARTS_InteLigand.txt
[INFO] [stderr] 
[INFO] [stdout] test fingerprint::test_mod_fingerprint::test_get_fp ... ok
[INFO] [stdout] test fingerprint::test_mod_fingerprint::test_get_fp_for_smiles_vec ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests openbabel
[INFO] [stdout] 
[INFO] [stdout] running 3 tests
[INFO] [stdout] test src/fingerprint.rs - fingerprint (line 12) ... ok
[INFO] [stdout] test src/smartspattern.rs - smartspattern (line 5) ... ok
[INFO] [stdout] test src/molecule.rs - molecule (line 5) ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.89s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "e7372e7fe7b3ee8e976eb6d9d646f2f29923bcc6d184be12032c2da5e74c267c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e7372e7fe7b3ee8e976eb6d9d646f2f29923bcc6d184be12032c2da5e74c267c", kill_on_drop: false }`
[INFO] [stdout] e7372e7fe7b3ee8e976eb6d9d646f2f29923bcc6d184be12032c2da5e74c267c