[INFO] fetching crate openbabel 0.3.5...
[INFO] testing openbabel-0.3.5 against master#acb8934fd57b3c2740c4abac0a5728c2c9b1423b for pr-101061-1
[INFO] extracting crate openbabel 0.3.5 into /workspace/builds/worker-5/source
[INFO] validating manifest of crates.io crate openbabel 0.3.5 on toolchain acb8934fd57b3c2740c4abac0a5728c2c9b1423b
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+acb8934fd57b3c2740c4abac0a5728c2c9b1423b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate openbabel 0.3.5
[INFO] removed 0 missing examples
[INFO] finished tweaking crates.io crate openbabel 0.3.5
[INFO] tweaked toml for crates.io crate openbabel 0.3.5 written to /workspace/builds/worker-5/source/Cargo.toml
[INFO] crate crates.io crate openbabel 0.3.5 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+acb8934fd57b3c2740c4abac0a5728c2c9b1423b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded scratch v1.0.1
[INFO] [stderr]   Downloaded fs_extra v1.2.0
[INFO] [stderr]   Downloaded cxx-build v1.0.68
[INFO] [stderr]   Downloaded openbabel-sys v0.1.8+openbabel-3.1.1
[INFO] [stderr]   Downloaded once_cell v1.12.0
[INFO] [stderr]   Downloaded codespan-reporting v0.11.1
[INFO] [stderr]   Downloaded link-cplusplus v1.0.6
[INFO] [stderr]   Downloaded regex-syntax v0.6.26
[INFO] [stderr]   Downloaded wasm-bindgen-shared v0.2.80
[INFO] [stderr]   Downloaded num-traits v0.2.15
[INFO] [stderr]   Downloaded regex v1.5.6
[INFO] [stderr]   Downloaded web-sys v0.3.57
[INFO] [stderr]   Downloaded serde v1.0.137
[INFO] [stderr]   Downloaded cxxbridge-macro v1.0.67
[INFO] [stderr]   Downloaded rayon v1.5.3
[INFO] [stderr]   Downloaded libc v0.2.126
[INFO] [stderr]   Downloaded serde_json v1.0.81
[INFO] [stderr]   Downloaded rayon-core v1.9.3
[INFO] [stderr]   Downloaded semver v1.0.9
[INFO] [stderr]   Downloaded chiral-db-fp-kind v0.1.0
[INFO] [stderr]   Downloaded chiral-db-sources v0.2.0
[INFO] [stderr]   Downloaded js-sys v0.3.57
[INFO] [stderr]   Downloaded wasm-bindgen-backend v0.2.80
[INFO] [stderr]   Downloaded wasm-bindgen v0.2.80
[INFO] [stderr]   Downloaded wasm-bindgen-macro-support v0.2.80
[INFO] [stderr]   Downloaded wasm-bindgen-macro v0.2.80
[INFO] [stderr]   Downloaded serde_derive v1.0.137
[INFO] [stderr]   Downloaded cxx v1.0.67
[INFO] [stderr]   Downloaded cxxbridge-flags v1.0.67
[INFO] [stderr]   Downloaded ryu v1.0.10
[INFO] [stderr]   Downloaded itoa v1.0.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:824c28ce115f6b999260af6986f3384c158e782489540e41c0b698ca1d9fd927" "/opt/rustwide/cargo-home/bin/cargo" "+acb8934fd57b3c2740c4abac0a5728c2c9b1423b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] de7f6649afe0dcd6aaa62d6a52ed6e651245b943c8627bc5de8ab75c978de576
[INFO] running `Command { std: "docker" "start" "-a" "de7f6649afe0dcd6aaa62d6a52ed6e651245b943c8627bc5de8ab75c978de576", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "de7f6649afe0dcd6aaa62d6a52ed6e651245b943c8627bc5de8ab75c978de576", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "de7f6649afe0dcd6aaa62d6a52ed6e651245b943c8627bc5de8ab75c978de576", kill_on_drop: false }`
[INFO] [stdout] de7f6649afe0dcd6aaa62d6a52ed6e651245b943c8627bc5de8ab75c978de576
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:824c28ce115f6b999260af6986f3384c158e782489540e41c0b698ca1d9fd927" "/opt/rustwide/cargo-home/bin/cargo" "+acb8934fd57b3c2740c4abac0a5728c2c9b1423b" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 32ef2bfaf411a8a5399a5aec2b6569d5369a4d5ad9e49a625de426a5c71f053f
[INFO] running `Command { std: "docker" "start" "-a" "32ef2bfaf411a8a5399a5aec2b6569d5369a4d5ad9e49a625de426a5c71f053f", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.37
[INFO] [stderr]    Compiling cc v1.0.73
[INFO] [stderr]    Compiling unicode-xid v0.2.2
[INFO] [stderr]    Compiling syn v1.0.91
[INFO] [stderr]    Compiling scratch v1.0.1
[INFO] [stderr]    Compiling unicode-width v0.1.9
[INFO] [stderr]    Compiling cxxbridge-flags v1.0.67
[INFO] [stderr]    Compiling termcolor v1.1.3
[INFO] [stderr]    Compiling once_cell v1.12.0
[INFO] [stderr]    Compiling fs_extra v1.2.0
[INFO] [stderr]    Compiling chiral-db-fp-kind v0.1.0
[INFO] [stderr]    Compiling codespan-reporting v0.11.1
[INFO] [stderr]    Compiling quote v1.0.18
[INFO] [stderr]    Compiling link-cplusplus v1.0.6
[INFO] [stderr]    Compiling cxx v1.0.67
[INFO] [stderr]    Compiling cxx-build v1.0.68
[INFO] [stderr]    Compiling cxxbridge-macro v1.0.67
[INFO] [stderr]    Compiling openbabel-sys v0.1.8+openbabel-3.1.1
[INFO] [stderr]    Compiling openbabel v0.3.5 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 32s
[INFO] running `Command { std: "docker" "inspect" "32ef2bfaf411a8a5399a5aec2b6569d5369a4d5ad9e49a625de426a5c71f053f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "32ef2bfaf411a8a5399a5aec2b6569d5369a4d5ad9e49a625de426a5c71f053f", kill_on_drop: false }`
[INFO] [stdout] 32ef2bfaf411a8a5399a5aec2b6569d5369a4d5ad9e49a625de426a5c71f053f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:824c28ce115f6b999260af6986f3384c158e782489540e41c0b698ca1d9fd927" "/opt/rustwide/cargo-home/bin/cargo" "+acb8934fd57b3c2740c4abac0a5728c2c9b1423b" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 66828d85f5d942d98d0d4e987d7634e0b49d80e4c86d87d7a8f91d5cfaec944d
[INFO] running `Command { std: "docker" "start" "-a" "66828d85f5d942d98d0d4e987d7634e0b49d80e4c86d87d7a8f91d5cfaec944d", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling autocfg v1.1.0
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling libc v0.2.126
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling crossbeam-utils v0.8.8
[INFO] [stderr]    Compiling serde v1.0.137
[INFO] [stderr]    Compiling semver v1.0.9
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]    Compiling rayon-core v1.9.3
[INFO] [stderr]    Compiling scopeguard v1.1.0
[INFO] [stderr]    Compiling either v1.6.1
[INFO] [stderr]    Compiling serde_json v1.0.81
[INFO] [stderr]    Compiling ryu v1.0.10
[INFO] [stderr]    Compiling plotters-backend v0.3.2
[INFO] [stderr]    Compiling serde_derive v1.0.137
[INFO] [stderr]    Compiling itoa v1.0.2
[INFO] [stderr]    Compiling regex-automata v0.1.10
[INFO] [stderr]    Compiling ppv-lite86 v0.2.16
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling regex-syntax v0.6.26
[INFO] [stderr]    Compiling itertools v0.10.3
[INFO] [stderr]    Compiling plotters-svg v0.3.1
[INFO] [stderr]    Compiling half v1.8.2
[INFO] [stderr]    Compiling bitflags v1.3.2
[INFO] [stderr]    Compiling same-file v1.0.6
[INFO] [stderr]    Compiling itoa v0.4.8
[INFO] [stderr]    Compiling walkdir v2.3.2
[INFO] [stderr]    Compiling clap v2.34.0
[INFO] [stderr]    Compiling oorandom v11.1.3
[INFO] [stderr]    Compiling memoffset v0.6.5
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.8
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling rayon v1.5.3
[INFO] [stderr]    Compiling rustc_version v0.4.0
[INFO] [stderr]    Compiling crossbeam-channel v0.5.4
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling cast v0.2.7
[INFO] [stderr]    Compiling crossbeam-deque v0.8.1
[INFO] [stderr]    Compiling regex v1.5.6
[INFO] [stderr]    Compiling getrandom v0.2.7
[INFO] [stderr]    Compiling num_cpus v1.13.1
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling rand_core v0.6.3
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling criterion-plot v0.4.4
[INFO] [stderr]    Compiling plotters v0.3.1
[INFO] [stderr]    Compiling chiral-db-sources v0.2.0
[INFO] [stderr]    Compiling bstr v0.2.17
[INFO] [stderr]    Compiling serde_cbor v0.11.2
[INFO] [stderr]    Compiling csv v1.1.6
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling criterion v0.3.5
[INFO] [stderr]    Compiling openbabel v0.3.5 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 22.86s
[INFO] running `Command { std: "docker" "inspect" "66828d85f5d942d98d0d4e987d7634e0b49d80e4c86d87d7a8f91d5cfaec944d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "66828d85f5d942d98d0d4e987d7634e0b49d80e4c86d87d7a8f91d5cfaec944d", kill_on_drop: false }`
[INFO] [stdout] 66828d85f5d942d98d0d4e987d7634e0b49d80e4c86d87d7a8f91d5cfaec944d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:824c28ce115f6b999260af6986f3384c158e782489540e41c0b698ca1d9fd927" "/opt/rustwide/cargo-home/bin/cargo" "+acb8934fd57b3c2740c4abac0a5728c2c9b1423b" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 9d19e93617bd19edb0f9d13d40881abc51053cd4d39f3a277558787877413715
[INFO] running `Command { std: "docker" "start" "-a" "9d19e93617bd19edb0f9d13d40881abc51053cd4d39f3a277558787877413715", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.09s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/openbabel-567b8fa8ef4909da)
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test molecule::test_mod_molecule::test_molecule ... ok
[INFO] [stdout] test smartspattern::test_mod_smartspattern::test_match ... ok
[INFO] [stdout] test fingerprint::test_mod_fingerprint::test_get_fp ... ok
[INFO] [stderr] ==============================
[INFO] [stdout] test fingerprint::test_mod_fingerprint::test_get_fp_for_smiles_vec ... ok
[INFO] [stderr] *** Open Babel Error  in ReadPatternFile
[INFO] [stdout] 
[INFO] [stderr]   Cannot open patterns.txt
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stderr] 
[INFO] [stdout] 
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in ReadPatternFile
[INFO] [stderr]   Cannot open SMARTS_InteLigand.txt
[INFO] [stderr] 
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in ReadPatternFile
[INFO] [stderr]   Cannot open patterns.txt
[INFO] [stderr] 
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in ReadPatternFile
[INFO] [stderr]   Cannot open patterns.txt
[INFO] [stderr] 
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in ReadPatternFile
[INFO] [stderr]   Cannot open SMARTS_InteLigand.txt
[INFO] [stderr] 
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in ReadPatternFile
[INFO] [stderr]   Cannot open SMARTS_InteLigand.txt
[INFO] [stderr] 
[INFO] [stderr]    Doc-tests openbabel
[INFO] [stdout] 
[INFO] [stdout] running 3 tests
[INFO] [stdout] test src/molecule.rs - molecule (line 5) ... ok
[INFO] [stdout] test src/fingerprint.rs - fingerprint (line 12) ... ok
[INFO] [stdout] test src/smartspattern.rs - smartspattern (line 5) ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 1.83s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "9d19e93617bd19edb0f9d13d40881abc51053cd4d39f3a277558787877413715", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9d19e93617bd19edb0f9d13d40881abc51053cd4d39f3a277558787877413715", kill_on_drop: false }`
[INFO] [stdout] 9d19e93617bd19edb0f9d13d40881abc51053cd4d39f3a277558787877413715