[INFO] cloning repository https://github.com/informationsea/sequencetoolkit
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/informationsea/sequencetoolkit" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] dd0ea6f940b30b9aa1c7bddcbbf504770730a43e
[INFO] checking informationsea/sequencetoolkit against master#80ed61fbd64936ed676c2050e7e660b5ad78c9f2 for pr-100555
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit" "/workspace/builds/worker-2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/informationsea/sequencetoolkit on toolchain 80ed61fbd64936ed676c2050e7e660b5ad78c9f2
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+80ed61fbd64936ed676c2050e7e660b5ad78c9f2" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] finished tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] tweaked toml for git repo https://github.com/informationsea/sequencetoolkit written to /workspace/builds/worker-2/source/Cargo.toml
[INFO] crate git repo https://github.com/informationsea/sequencetoolkit already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+80ed61fbd64936ed676c2050e7e660b5ad78c9f2" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded bio v0.41.0
[INFO] [stderr]   Downloaded rust-htslib v0.39.5
[INFO] [stderr]   Downloaded bio-types v0.13.0
[INFO] [stderr]   Downloaded autocompress v0.2.2
[INFO] [stderr]   Downloaded vcf v0.6.0
[INFO] [stderr]   Downloaded strum_macros v0.24.2
[INFO] [stderr]   Downloaded hts-sys v2.0.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:824c28ce115f6b999260af6986f3384c158e782489540e41c0b698ca1d9fd927" "/opt/rustwide/cargo-home/bin/cargo" "+80ed61fbd64936ed676c2050e7e660b5ad78c9f2" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 2d76ada18302e8c50c3bc847932e76ec999d6fd79d4ce1777d1bcec99747d50a
[INFO] running `Command { std: "docker" "start" "-a" "2d76ada18302e8c50c3bc847932e76ec999d6fd79d4ce1777d1bcec99747d50a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "2d76ada18302e8c50c3bc847932e76ec999d6fd79d4ce1777d1bcec99747d50a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2d76ada18302e8c50c3bc847932e76ec999d6fd79d4ce1777d1bcec99747d50a", kill_on_drop: false }`
[INFO] [stdout] 2d76ada18302e8c50c3bc847932e76ec999d6fd79d4ce1777d1bcec99747d50a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:824c28ce115f6b999260af6986f3384c158e782489540e41c0b698ca1d9fd927" "/opt/rustwide/cargo-home/bin/cargo" "+80ed61fbd64936ed676c2050e7e660b5ad78c9f2" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ac4affcb9c31b2310eadc6c30285ce56192f09ff808d6bc8b6799049be626549
[INFO] running `Command { std: "docker" "start" "-a" "ac4affcb9c31b2310eadc6c30285ce56192f09ff808d6bc8b6799049be626549", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.126
[INFO] [stderr]    Compiling proc-macro2 v1.0.42
[INFO] [stderr]    Compiling unicode-ident v1.0.2
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[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]     Checking cfg-if v1.0.0
[INFO] [stderr]    Compiling serde_derive v1.0.141
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[INFO] [stderr]    Compiling version_check v0.9.4
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[INFO] [stderr]     Checking ppv-lite86 v0.2.16
[INFO] [stderr]     Checking bitflags v1.3.2
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[INFO] [stderr]    Compiling crc32fast v1.3.2
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[INFO] [stderr]     Checking triple_accel v0.4.0
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[INFO] [stderr]    Compiling humantime v2.1.0
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[INFO] [stderr]    Compiling failure_derive v0.1.8
[INFO] [stderr]     Checking tinyvec_macros v0.1.0
[INFO] [stderr]    Compiling getrandom v0.1.16
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[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]     Checking gimli v0.26.2
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]     Checking matches v0.1.9
[INFO] [stderr]     Checking rustc-demangle v0.1.21
[INFO] [stderr]     Checking unicode-bidi v0.3.8
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[INFO] [stderr]    Compiling serde_json v1.0.82
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[INFO] [stderr]     Checking itoa v1.0.2
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling clang-sys v1.3.3
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]    Compiling num-rational v0.4.1
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[INFO] [stderr]     Checking matrixmultiply v0.3.2
[INFO] [stderr]    Compiling libloading v0.7.3
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[INFO] [stderr]     Checking itertools v0.10.3
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[INFO] [stderr]    Compiling bv v0.11.1
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[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]     Checking tinyvec v1.6.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking form_urlencoded v1.0.1
[INFO] [stderr]     Checking humantime v1.3.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking brotli-decompressor v2.3.2
[INFO] [stderr]     Checking unicode-normalization v0.1.21
[INFO] [stderr]     Checking aho-corasick v0.7.18
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking object v0.29.0
[INFO] [stderr]     Checking crossbeam-channel v0.5.6
[INFO] [stderr]     Checking flate2 v1.0.24
[INFO] [stderr]    Compiling jobserver v0.1.24
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling which v3.1.1
[INFO] [stderr]     Checking getrandom v0.2.7
[INFO] [stderr]     Checking regex v1.6.0
[INFO] [stderr]    Compiling cc v1.0.73
[INFO] [stderr]     Checking idna v0.2.3
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[INFO] [stderr]     Checking rand_core v0.6.3
[INFO] [stderr]     Checking brotli v3.3.4
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]    Compiling cmake v0.1.48
[INFO] [stderr]    Compiling openssl-src v111.22.0+1.1.1q
[INFO] [stderr]     Checking addr2line v0.17.0
[INFO] [stderr]     Checking num-complex v0.4.2
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[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking pretty_env_logger v0.4.0
[INFO] [stderr]    Compiling env_logger v0.8.4
[INFO] [stderr]    Compiling lzma-sys v0.1.19
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling zstd-sys v1.6.2+zstd.1.5.1
[INFO] [stderr]    Compiling lz4-sys v1.9.3
[INFO] [stderr]    Compiling openssl-sys v0.9.75
[INFO] [stderr]    Compiling libz-sys v1.1.8
[INFO] [stderr]    Compiling curl-sys v0.4.56+curl-7.83.1
[INFO] [stderr]    Compiling backtrace v0.3.66
[INFO] [stderr]    Compiling hts-sys v2.0.2
[INFO] [stderr]    Compiling cexpr v0.4.0
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]    Compiling synstructure v0.12.6
[INFO] [stderr]     Checking bzip2 v0.4.3
[INFO] [stderr]    Compiling thiserror-impl v1.0.31
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.24.2
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling getset v0.1.2
[INFO] [stderr]    Compiling strum_macros v0.23.1
[INFO] [stderr]     Checking nalgebra v0.27.1
[INFO] [stderr]     Checking enum-map v1.1.1
[INFO] [stderr]     Checking lz4 v1.23.3
[INFO] [stderr]     Checking thiserror v1.0.31
[INFO] [stderr]     Checking vcf v0.6.0
[INFO] [stderr]     Checking xz2 v0.1.7
[INFO] [stderr]     Checking bio-types v0.13.0
[INFO] [stderr]     Checking failure v0.1.8
[INFO] [stderr]     Checking statrs v0.15.0
[INFO] [stderr]     Checking vec_map v0.8.2
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[INFO] [stderr]     Checking zstd v0.9.2+zstd.1.5.1
[INFO] [stderr]     Checking autocompress v0.2.2
[INFO] [stderr]     Checking bio v0.41.0
[INFO] [stderr]     Checking sequencetoolkit_common v0.1.0 (/opt/rustwide/workdir/sequencetoolkit_common)
[INFO] [stderr]     Checking fastqutils v0.1.0 (/opt/rustwide/workdir/fastqutils)
[INFO] [stderr]     Checking bedutils v0.1.0 (/opt/rustwide/workdir/bedutils)
[INFO] [stderr]     Checking geneannot v0.1.0 (/opt/rustwide/workdir/geneannot)
[INFO] [stderr]    Compiling libxlsxwriter-sys v1.1.1
[INFO] [stderr]     Checking rust-htslib v0.39.5
[INFO] [stderr]     Checking bamutils v0.1.0 (/opt/rustwide/workdir/bamutils)
[INFO] [stderr]     Checking xlsxwriter v0.3.5
[INFO] [stderr]     Checking vcfutils v0.1.0 (/opt/rustwide/workdir/vcfutils)
[INFO] [stderr]     Checking sequencetoolkit v0.3.0 (/opt/rustwide/workdir/sequencetoolkit)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 23s
[INFO] running `Command { std: "docker" "inspect" "ac4affcb9c31b2310eadc6c30285ce56192f09ff808d6bc8b6799049be626549", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ac4affcb9c31b2310eadc6c30285ce56192f09ff808d6bc8b6799049be626549", kill_on_drop: false }`
[INFO] [stdout] ac4affcb9c31b2310eadc6c30285ce56192f09ff808d6bc8b6799049be626549