[INFO] cloning repository https://github.com/mvalorilab/somaticbatch
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/mvalorilab/somaticbatch" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmvalorilab%2Fsomaticbatch", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmvalorilab%2Fsomaticbatch'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 43654256b8b3a5da72ccc8921ca454fea65387eb
[INFO] checking mvalorilab/somaticbatch against master#385fa9d845dd326c6bbfd58c22244215e431948a for never-type-fallback-to-never
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmvalorilab%2Fsomaticbatch" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/mvalorilab/somaticbatch on toolchain 385fa9d845dd326c6bbfd58c22244215e431948a
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/mvalorilab/somaticbatch
[INFO] finished tweaking git repo https://github.com/mvalorilab/somaticbatch
[INFO] tweaked toml for git repo https://github.com/mvalorilab/somaticbatch written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/mvalorilab/somaticbatch already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded simba v0.5.1
[INFO] [stderr]   Downloaded statrs v0.15.0
[INFO] [stderr]   Downloaded nalgebra v0.27.1
[INFO] [stderr]   Downloaded float_extras v0.1.6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 45d17e1370273b7f9e61117223a884893162900169989ad77d9ba75e05953c7b
[INFO] running `Command { std: "docker" "start" "-a" "45d17e1370273b7f9e61117223a884893162900169989ad77d9ba75e05953c7b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "45d17e1370273b7f9e61117223a884893162900169989ad77d9ba75e05953c7b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "45d17e1370273b7f9e61117223a884893162900169989ad77d9ba75e05953c7b", kill_on_drop: false }`
[INFO] [stdout] 45d17e1370273b7f9e61117223a884893162900169989ad77d9ba75e05953c7b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 2949b3bb65bbcf3305fecdedc3831a11d123124fedbb51ec86a09a3b151dc2b7
[INFO] running `Command { std: "docker" "start" "-a" "2949b3bb65bbcf3305fecdedc3831a11d123124fedbb51ec86a09a3b151dc2b7", kill_on_drop: false }`
[INFO] [stderr]    Compiling libm v0.2.2
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling libc v0.2.118
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling syn v1.0.86
[INFO] [stderr]    Compiling num-rational v0.4.0
[INFO] [stderr]    Compiling paste v1.0.6
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking linked-hash-map v0.5.4
[INFO] [stderr]    Compiling quote v1.0.15
[INFO] [stderr]     Checking matrixmultiply v0.3.2
[INFO] [stderr]     Checking getrandom v0.2.4
[INFO] [stderr]     Checking float_extras v0.1.6
[INFO] [stderr]     Checking rand_core v0.6.3
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking num-complex v0.4.0
[INFO] [stderr]     Checking simba v0.5.1
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]     Checking nalgebra v0.27.1
[INFO] [stderr]     Checking statrs v0.15.0
[INFO] [stderr]     Checking amplicon_caller v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 20.47s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 3`
[INFO] running `Command { std: "docker" "inspect" "2949b3bb65bbcf3305fecdedc3831a11d123124fedbb51ec86a09a3b151dc2b7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2949b3bb65bbcf3305fecdedc3831a11d123124fedbb51ec86a09a3b151dc2b7", kill_on_drop: false }`
[INFO] [stdout] 2949b3bb65bbcf3305fecdedc3831a11d123124fedbb51ec86a09a3b151dc2b7
[INFO] checking mvalorilab/somaticbatch against try#2d84f2737f3bd9ebfcb07f75aa198d6cf7c715d2 for never-type-fallback-to-never
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmvalorilab%2Fsomaticbatch" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/mvalorilab/somaticbatch on toolchain 2d84f2737f3bd9ebfcb07f75aa198d6cf7c715d2
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2d84f2737f3bd9ebfcb07f75aa198d6cf7c715d2" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/mvalorilab/somaticbatch
[INFO] finished tweaking git repo https://github.com/mvalorilab/somaticbatch
[INFO] tweaked toml for git repo https://github.com/mvalorilab/somaticbatch written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/mvalorilab/somaticbatch already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2d84f2737f3bd9ebfcb07f75aa198d6cf7c715d2" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+2d84f2737f3bd9ebfcb07f75aa198d6cf7c715d2" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] fec676337d3a590b011d5f91fcdbe523d4ffd44adb9714b7da7926cabab35cda
[INFO] running `Command { std: "docker" "start" "-a" "fec676337d3a590b011d5f91fcdbe523d4ffd44adb9714b7da7926cabab35cda", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "fec676337d3a590b011d5f91fcdbe523d4ffd44adb9714b7da7926cabab35cda", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fec676337d3a590b011d5f91fcdbe523d4ffd44adb9714b7da7926cabab35cda", kill_on_drop: false }`
[INFO] [stdout] fec676337d3a590b011d5f91fcdbe523d4ffd44adb9714b7da7926cabab35cda
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+2d84f2737f3bd9ebfcb07f75aa198d6cf7c715d2" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] b9a0fa7435e1e81a003e2640d5816ad0776b1e75dbf3ed82a7329138af655fde
[INFO] running `Command { std: "docker" "start" "-a" "b9a0fa7435e1e81a003e2640d5816ad0776b1e75dbf3ed82a7329138af655fde", kill_on_drop: false }`
[INFO] [stderr]    Compiling libm v0.2.2
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling libc v0.2.118
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling syn v1.0.86
[INFO] [stderr]    Compiling num-rational v0.4.0
[INFO] [stderr]    Compiling paste v1.0.6
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking linked-hash-map v0.5.4
[INFO] [stderr]    Compiling quote v1.0.15
[INFO] [stderr]     Checking matrixmultiply v0.3.2
[INFO] [stderr]     Checking getrandom v0.2.4
[INFO] [stderr]     Checking float_extras v0.1.6
[INFO] [stderr]     Checking rand_core v0.6.3
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking num-complex v0.4.0
[INFO] [stderr]     Checking simba v0.5.1
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]     Checking nalgebra v0.27.1
[INFO] [stderr]     Checking statrs v0.15.0
[INFO] [stderr]     Checking amplicon_caller v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 19.26s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 3`
[INFO] running `Command { std: "docker" "inspect" "b9a0fa7435e1e81a003e2640d5816ad0776b1e75dbf3ed82a7329138af655fde", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b9a0fa7435e1e81a003e2640d5816ad0776b1e75dbf3ed82a7329138af655fde", kill_on_drop: false }`
[INFO] [stdout] b9a0fa7435e1e81a003e2640d5816ad0776b1e75dbf3ed82a7329138af655fde