[INFO] cloning repository https://github.com/Adoni5/cnv_from_bam [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Adoni5/cnv_from_bam" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAdoni5%2Fcnv_from_bam", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAdoni5%2Fcnv_from_bam'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 129b0d58a761d35dedec256274a1d7c8e21e83e8 [INFO] checking Adoni5/cnv_from_bam against master#385fa9d845dd326c6bbfd58c22244215e431948a for never-type-fallback-to-never [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAdoni5%2Fcnv_from_bam" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/Adoni5/cnv_from_bam on toolchain 385fa9d845dd326c6bbfd58c22244215e431948a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/Adoni5/cnv_from_bam [INFO] finished tweaking git repo https://github.com/Adoni5/cnv_from_bam [INFO] tweaked toml for git repo https://github.com/Adoni5/cnv_from_bam written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 92 packages [INFO] [stderr] Adding bitflags v1.3.2 (latest: v2.5.0) [INFO] [stderr] Adding cfg_aliases v0.1.1 (latest: v0.2.0) [INFO] [stderr] Adding encode_unicode v0.3.6 (latest: v1.0.0) [INFO] [stderr] Adding heck v0.4.1 (latest: v0.5.0) [INFO] [stderr] Adding noodles v0.59.0 (latest: v0.68.0) [INFO] [stderr] Adding noodles-bam v0.51.0 (latest: v0.59.0) [INFO] [stderr] Adding noodles-bgzf v0.25.0 (latest: v0.28.0) [INFO] [stderr] Adding noodles-core v0.12.0 (latest: v0.14.0) [INFO] [stderr] Adding noodles-csi v0.28.0 (latest: v0.32.0) [INFO] [stderr] Adding noodles-sam v0.48.0 (latest: v0.56.0) [INFO] [stderr] Adding pyo3 v0.20.3 (latest: v0.21.1) [INFO] [stderr] Adding pyo3-build-config v0.20.3 (latest: v0.21.1) [INFO] [stderr] Adding pyo3-ffi v0.20.3 (latest: v0.21.1) [INFO] [stderr] Adding pyo3-macros v0.20.3 (latest: v0.21.1) [INFO] [stderr] Adding pyo3-macros-backend v0.20.3 (latest: v0.21.1) [INFO] [stderr] Adding redox_syscall v0.4.1 (latest: v0.5.1) [INFO] [stderr] Adding windows-targets v0.48.5 (latest: v0.52.4) [INFO] [stderr] Adding windows_aarch64_gnullvm v0.48.5 (latest: v0.52.4) [INFO] [stderr] Adding windows_aarch64_msvc v0.48.5 (latest: v0.52.4) [INFO] [stderr] Adding windows_i686_gnu v0.48.5 (latest: v0.52.4) [INFO] [stderr] Adding windows_i686_msvc v0.48.5 (latest: v0.52.4) [INFO] [stderr] Adding windows_x86_64_gnu v0.48.5 (latest: v0.52.4) [INFO] [stderr] Adding windows_x86_64_gnullvm v0.48.5 (latest: v0.52.4) [INFO] [stderr] Adding windows_x86_64_msvc v0.48.5 (latest: v0.52.4) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded noodles-core v0.12.0 [INFO] [stderr] Downloaded noodles v0.59.0 [INFO] [stderr] Downloaded natord v1.0.9 [INFO] [stderr] Downloaded libdeflater v1.20.0 [INFO] [stderr] Downloaded noodles-bam v0.51.0 [INFO] [stderr] Downloaded noodles-csi v0.28.0 [INFO] [stderr] Downloaded noodles-sam v0.48.0 [INFO] [stderr] Downloaded libdeflate-sys v1.20.0 [INFO] [stderr] Downloaded noodles-bgzf v0.25.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] e1c1f4d97199a97a7907e7051de60afc9922423831a948ca04d04dafc8ffcfbd [INFO] running `Command { std: "docker" "start" "-a" "e1c1f4d97199a97a7907e7051de60afc9922423831a948ca04d04dafc8ffcfbd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e1c1f4d97199a97a7907e7051de60afc9922423831a948ca04d04dafc8ffcfbd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e1c1f4d97199a97a7907e7051de60afc9922423831a948ca04d04dafc8ffcfbd", kill_on_drop: false }` [INFO] [stdout] e1c1f4d97199a97a7907e7051de60afc9922423831a948ca04d04dafc8ffcfbd [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] bc30e5aec86a421e2b7a71bb1937a1ed4024b828e7535cf1efa44e6c4c5e9099 [INFO] running `Command { std: "docker" "start" "-a" "bc30e5aec86a421e2b7a71bb1937a1ed4024b828e7535cf1efa44e6c4c5e9099", kill_on_drop: false }` [INFO] [stderr] Compiling target-lexicon v0.12.14 [INFO] [stderr] Compiling libc v0.2.153 [INFO] [stderr] Compiling libdeflate-sys v1.20.0 [INFO] [stderr] Checking crossbeam-channel v0.5.12 [INFO] [stderr] Compiling quote v1.0.35 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Compiling portable-atomic v1.6.0 [INFO] [stderr] Checking noodles-core v0.12.0 [INFO] [stderr] Compiling cfg_aliases v0.1.1 [INFO] [stderr] Compiling memoffset v0.9.1 [INFO] [stderr] Compiling nix v0.28.0 [INFO] [stderr] Compiling syn v2.0.58 [INFO] [stderr] Checking number_prefix v0.4.0 [INFO] [stderr] Compiling indoc v2.0.5 [INFO] [stderr] Checking unindent v0.2.3 [INFO] [stderr] Checking natord v1.0.9 [INFO] [stderr] Compiling pyo3-build-config v0.20.3 [INFO] [stderr] Checking parking_lot_core v0.9.9 [INFO] [stderr] Checking console v0.15.8 [INFO] [stderr] Checking parking_lot v0.12.1 [INFO] [stderr] Checking once_cell v1.19.0 [INFO] [stderr] Checking indicatif v0.17.8 [INFO] [stderr] Compiling pyo3-ffi v0.20.3 [INFO] [stderr] Compiling pyo3 v0.20.3 [INFO] [stderr] Checking ctrlc v3.4.4 [INFO] [stderr] Compiling pyo3-macros-backend v0.20.3 [INFO] [stderr] Checking libdeflater v1.20.0 [INFO] [stderr] Checking noodles-bgzf v0.25.0 [INFO] [stderr] Checking noodles-csi v0.28.0 [INFO] [stderr] Checking noodles-sam v0.48.0 [INFO] [stderr] Compiling pyo3-macros v0.20.3 [INFO] [stderr] Checking noodles-bam v0.51.0 [INFO] [stderr] Checking noodles v0.59.0 [INFO] [stderr] Checking cnv_from_bam v0.4.3 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 27.56s [INFO] running `Command { std: "docker" "inspect" "bc30e5aec86a421e2b7a71bb1937a1ed4024b828e7535cf1efa44e6c4c5e9099", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bc30e5aec86a421e2b7a71bb1937a1ed4024b828e7535cf1efa44e6c4c5e9099", kill_on_drop: false }` [INFO] [stdout] bc30e5aec86a421e2b7a71bb1937a1ed4024b828e7535cf1efa44e6c4c5e9099 [INFO] checking Adoni5/cnv_from_bam against try#2d84f2737f3bd9ebfcb07f75aa198d6cf7c715d2 for never-type-fallback-to-never [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAdoni5%2Fcnv_from_bam" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/Adoni5/cnv_from_bam on toolchain 2d84f2737f3bd9ebfcb07f75aa198d6cf7c715d2 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2d84f2737f3bd9ebfcb07f75aa198d6cf7c715d2" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/Adoni5/cnv_from_bam [INFO] finished tweaking git repo https://github.com/Adoni5/cnv_from_bam [INFO] tweaked toml for git repo https://github.com/Adoni5/cnv_from_bam written to /workspace/builds/worker-2-tc2/source/Cargo.toml [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2d84f2737f3bd9ebfcb07f75aa198d6cf7c715d2" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 92 packages [INFO] [stderr] Adding bitflags v1.3.2 (latest: v2.5.0) [INFO] [stderr] Adding cfg_aliases v0.1.1 (latest: v0.2.0) [INFO] [stderr] Adding encode_unicode v0.3.6 (latest: v1.0.0) [INFO] [stderr] Adding heck v0.4.1 (latest: v0.5.0) [INFO] [stderr] Adding noodles v0.59.0 (latest: v0.68.0) [INFO] [stderr] Adding noodles-bam v0.51.0 (latest: v0.59.0) [INFO] [stderr] Adding noodles-bgzf v0.25.0 (latest: v0.28.0) [INFO] [stderr] Adding noodles-core v0.12.0 (latest: v0.14.0) [INFO] [stderr] Adding noodles-csi v0.28.0 (latest: v0.32.0) [INFO] [stderr] Adding noodles-sam v0.48.0 (latest: v0.56.0) [INFO] [stderr] Adding pyo3 v0.20.3 (latest: v0.21.1) [INFO] [stderr] Adding pyo3-build-config v0.20.3 (latest: v0.21.1) [INFO] [stderr] Adding pyo3-ffi v0.20.3 (latest: v0.21.1) [INFO] [stderr] Adding pyo3-macros v0.20.3 (latest: v0.21.1) [INFO] [stderr] Adding pyo3-macros-backend v0.20.3 (latest: v0.21.1) [INFO] [stderr] Adding redox_syscall v0.4.1 (latest: v0.5.1) [INFO] [stderr] Adding windows-targets v0.48.5 (latest: v0.52.4) [INFO] [stderr] Adding windows_aarch64_gnullvm v0.48.5 (latest: v0.52.4) [INFO] [stderr] Adding windows_aarch64_msvc v0.48.5 (latest: v0.52.4) [INFO] [stderr] Adding windows_i686_gnu v0.48.5 (latest: v0.52.4) [INFO] [stderr] Adding windows_i686_msvc v0.48.5 (latest: v0.52.4) [INFO] [stderr] Adding windows_x86_64_gnu v0.48.5 (latest: v0.52.4) [INFO] [stderr] Adding windows_x86_64_gnullvm v0.48.5 (latest: v0.52.4) [INFO] [stderr] Adding windows_x86_64_msvc v0.48.5 (latest: v0.52.4) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2d84f2737f3bd9ebfcb07f75aa198d6cf7c715d2" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+2d84f2737f3bd9ebfcb07f75aa198d6cf7c715d2" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 0bd2a28fbb75372092e5d9fbfcba6eeddcbddac4be1fc7db3687688063fb982d [INFO] running `Command { std: "docker" "start" "-a" "0bd2a28fbb75372092e5d9fbfcba6eeddcbddac4be1fc7db3687688063fb982d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "0bd2a28fbb75372092e5d9fbfcba6eeddcbddac4be1fc7db3687688063fb982d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0bd2a28fbb75372092e5d9fbfcba6eeddcbddac4be1fc7db3687688063fb982d", kill_on_drop: false }` [INFO] [stdout] 0bd2a28fbb75372092e5d9fbfcba6eeddcbddac4be1fc7db3687688063fb982d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+2d84f2737f3bd9ebfcb07f75aa198d6cf7c715d2" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 01642a499b1c95c401e256726392ef531fad00c3eff9db3c207a3d8a91867de8 [INFO] running `Command { std: "docker" "start" "-a" "01642a499b1c95c401e256726392ef531fad00c3eff9db3c207a3d8a91867de8", kill_on_drop: false }` [INFO] [stderr] Compiling target-lexicon v0.12.14 [INFO] [stderr] Compiling libc v0.2.153 [INFO] [stderr] Compiling libdeflate-sys v1.20.0 [INFO] [stderr] Checking crossbeam-channel v0.5.12 [INFO] [stderr] Compiling quote v1.0.35 [INFO] [stderr] Checking noodles-core v0.12.0 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Compiling portable-atomic v1.6.0 [INFO] [stderr] Compiling cfg_aliases v0.1.1 [INFO] [stderr] Compiling memoffset v0.9.1 [INFO] [stderr] Compiling nix v0.28.0 [INFO] [stderr] Compiling syn v2.0.58 [INFO] [stderr] Checking unindent v0.2.3 [INFO] [stderr] Compiling indoc v2.0.5 [INFO] [stderr] Checking number_prefix v0.4.0 [INFO] [stderr] Checking natord v1.0.9 [INFO] [stderr] Compiling pyo3-build-config v0.20.3 [INFO] [stderr] Checking parking_lot_core v0.9.9 [INFO] [stderr] Checking console v0.15.8 [INFO] [stderr] Checking parking_lot v0.12.1 [INFO] [stderr] Checking once_cell v1.19.0 [INFO] [stderr] Checking indicatif v0.17.8 [INFO] [stderr] Compiling pyo3-ffi v0.20.3 [INFO] [stderr] Compiling pyo3 v0.20.3 [INFO] [stderr] Checking ctrlc v3.4.4 [INFO] [stderr] Compiling pyo3-macros-backend v0.20.3 [INFO] [stderr] Checking libdeflater v1.20.0 [INFO] [stderr] Checking noodles-bgzf v0.25.0 [INFO] [stderr] Checking noodles-csi v0.28.0 [INFO] [stderr] Checking noodles-sam v0.48.0 [INFO] [stderr] Compiling pyo3-macros v0.20.3 [INFO] [stderr] Checking noodles-bam v0.51.0 [INFO] [stderr] Checking noodles v0.59.0 [INFO] [stderr] Checking cnv_from_bam v0.4.3 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 25.88s [INFO] running `Command { std: "docker" "inspect" "01642a499b1c95c401e256726392ef531fad00c3eff9db3c207a3d8a91867de8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "01642a499b1c95c401e256726392ef531fad00c3eff9db3c207a3d8a91867de8", kill_on_drop: false }` [INFO] [stdout] 01642a499b1c95c401e256726392ef531fad00c3eff9db3c207a3d8a91867de8