[INFO] cloning repository https://github.com/COMBINE-lab/piscem-infer [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/COMBINE-lab/piscem-infer" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCOMBINE-lab%2Fpiscem-infer", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCOMBINE-lab%2Fpiscem-infer'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 171278d537bbfbfbc2b9cdd6a31b7bb0537b7b16 [INFO] checking COMBINE-lab/piscem-infer against master#385fa9d845dd326c6bbfd58c22244215e431948a for never-type-fallback-to-never [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCOMBINE-lab%2Fpiscem-infer" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/COMBINE-lab/piscem-infer on toolchain 385fa9d845dd326c6bbfd58c22244215e431948a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/COMBINE-lab/piscem-infer [INFO] finished tweaking git repo https://github.com/COMBINE-lab/piscem-infer [INFO] tweaked toml for git repo https://github.com/COMBINE-lab/piscem-infer written to /workspace/builds/worker-6-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/COMBINE-lab/piscem-infer already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Updating git repository `https://github.com/COMBINE-lab/libradicl` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded papergrid v0.11.0 [INFO] [stderr] Downloaded distrs v0.2.1 [INFO] [stderr] Downloaded noodles-core v0.14.0 [INFO] [stderr] Downloaded path-tools v0.1.0 [INFO] [stderr] Downloaded atomic_float v0.1.0 [INFO] [stderr] Downloaded anstream v0.6.12 [INFO] [stderr] Downloaded clap v4.5.1 [INFO] [stderr] Downloaded clap_builder v4.5.1 [INFO] [stderr] Downloaded parquet2 v0.17.2 [INFO] [stderr] Downloaded noodles-bam v0.56.0 [INFO] [stderr] Downloaded indexmap v2.2.3 [INFO] [stderr] Downloaded arrow2 v0.18.0 [INFO] [stderr] Downloaded noodles-sam v0.53.0 [INFO] [stderr] Downloaded tabled v0.15.0 [INFO] [stderr] Downloaded syn v2.0.51 [INFO] [stderr] Downloaded anyhow v1.0.80 [INFO] [stderr] Downloaded bio-types v1.0.1 [INFO] [stderr] Downloaded ahash v0.8.9 [INFO] [stderr] Downloaded noodles-bgzf v0.26.0 [INFO] [stderr] Downloaded noodles-csi v0.30.0 [INFO] [stderr] Downloaded scroll v0.12.0 [INFO] [stderr] Downloaded tabled_derive v0.7.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 72cf500bb57da588c2f2e552e8cbaf11d0584558b580a6d08388e79b1db4d075 [INFO] running `Command { std: "docker" "start" "-a" "72cf500bb57da588c2f2e552e8cbaf11d0584558b580a6d08388e79b1db4d075", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "72cf500bb57da588c2f2e552e8cbaf11d0584558b580a6d08388e79b1db4d075", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "72cf500bb57da588c2f2e552e8cbaf11d0584558b580a6d08388e79b1db4d075", kill_on_drop: false }` [INFO] [stdout] 72cf500bb57da588c2f2e552e8cbaf11d0584558b580a6d08388e79b1db4d075 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] eec47c29fae37990fc1b140347895c341be7dbd39b6f4b80f607232e7b04ea42 [INFO] running `Command { std: "docker" "start" "-a" "eec47c29fae37990fc1b140347895c341be7dbd39b6f4b80f607232e7b04ea42", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.78 [INFO] [stderr] Compiling unicode-ident v1.0.12 [INFO] [stderr] Compiling autocfg v1.1.0 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling libc v0.2.153 [INFO] [stderr] Compiling version_check v0.9.4 [INFO] [stderr] Checking memchr v2.7.1 [INFO] [stderr] Checking once_cell v1.19.0 [INFO] [stderr] Compiling libm v0.2.8 [INFO] [stderr] Compiling crossbeam-utils v0.8.19 [INFO] [stderr] Compiling crc32fast v1.4.0 [INFO] [stderr] Checking static_assertions v1.1.0 [INFO] [stderr] Checking adler v1.0.2 [INFO] [stderr] Checking pin-project-lite v0.2.13 [INFO] [stderr] Checking zerocopy v0.7.32 [INFO] [stderr] Checking futures-core v0.3.30 [INFO] [stderr] Checking lexical-util v0.8.5 [INFO] [stderr] Checking regex-syntax v0.8.2 [INFO] [stderr] Compiling pkg-config v0.3.30 [INFO] [stderr] Checking miniz_oxide v0.7.2 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling heck v0.4.1 [INFO] [stderr] Compiling num-traits v0.2.18 [INFO] [stderr] Compiling slab v0.4.9 [INFO] [stderr] Compiling serde v1.0.197 [INFO] [stderr] Compiling ahash v0.8.9 [INFO] [stderr] Checking bitflags v2.4.2 [INFO] [stderr] Checking futures-sink v0.3.30 [INFO] [stderr] Checking flate2 v1.0.28 [INFO] [stderr] Checking futures-channel v0.3.30 [INFO] [stderr] Checking pin-utils v0.1.0 [INFO] [stderr] Checking futures-io v0.3.30 [INFO] [stderr] Checking futures-task v0.3.30 [INFO] [stderr] Compiling semver v1.0.22 [INFO] [stderr] Checking crossbeam-channel v0.5.11 [INFO] [stderr] Checking lexical-parse-integer v0.8.6 [INFO] [stderr] Checking lexical-write-integer v0.8.5 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling num-bigint v0.4.4 [INFO] [stderr] Checking aho-corasick v1.1.2 [INFO] [stderr] Compiling rustix v0.38.31 [INFO] [stderr] Compiling quote v1.0.35 [INFO] [stderr] Compiling rustversion v1.0.14 [INFO] [stderr] Compiling snap v1.1.1 [INFO] [stderr] Checking bytes v1.5.0 [INFO] [stderr] Compiling async-trait v0.1.77 [INFO] [stderr] Compiling zstd-safe v6.0.6 [INFO] [stderr] Checking equivalent v1.0.1 [INFO] [stderr] Checking byteorder v1.5.0 [INFO] [stderr] Compiling syn v2.0.51 [INFO] [stderr] Checking lexical-parse-float v0.8.5 [INFO] [stderr] Checking lexical-write-float v0.8.5 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling num-rational v0.4.1 [INFO] [stderr] Compiling lock_api v0.4.11 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Checking smallvec v1.13.1 [INFO] [stderr] Checking utf8parse v0.2.1 [INFO] [stderr] Checking linux-raw-sys v0.4.13 [INFO] [stderr] Checking noodles-bgzf v0.26.0 [INFO] [stderr] Compiling parking_lot_core v0.9.9 [INFO] [stderr] Checking noodles-core v0.14.0 [INFO] [stderr] Checking getrandom v0.2.12 [INFO] [stderr] Compiling thiserror v1.0.57 [INFO] [stderr] Compiling cc v1.0.88 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Checking anstyle-parse v0.2.3 [INFO] [stderr] Compiling rustc_version v0.4.0 [INFO] [stderr] Checking crossbeam-epoch v0.9.18 [INFO] [stderr] Checking tracing-core v0.1.32 [INFO] [stderr] Checking array-init-cursor v0.2.0 [INFO] [stderr] Checking lexical-core v0.8.5 [INFO] [stderr] Checking anstyle v1.0.6 [INFO] [stderr] Checking colorchoice v1.0.0 [INFO] [stderr] Checking ppv-lite86 v0.2.17 [INFO] [stderr] Checking hashbrown v0.14.3 [INFO] [stderr] Checking regex-syntax v0.6.29 [INFO] [stderr] Checking anstyle-query v1.0.2 [INFO] [stderr] Checking scopeguard v1.2.0 [INFO] [stderr] Compiling anyhow v1.0.80 [INFO] [stderr] Checking fallible-streaming-iterator v0.1.9 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking streaming-decompression v0.1.2 [INFO] [stderr] Checking anstream v0.6.12 [INFO] [stderr] Checking num-complex v0.4.5 [INFO] [stderr] Checking crossbeam-deque v0.8.5 [INFO] [stderr] Compiling arrow2 v0.18.0 [INFO] [stderr] Checking planus v0.3.1 [INFO] [stderr] Checking num-iter v0.1.44 [INFO] [stderr] Checking clap_lex v0.7.0 [INFO] [stderr] Checking overload v0.1.1 [INFO] [stderr] Checking itoa v1.0.10 [INFO] [stderr] Compiling serde_json v1.0.114 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking unicode-width v0.1.11 [INFO] [stderr] Checking either v1.10.0 [INFO] [stderr] Checking fnv v1.0.7 [INFO] [stderr] Compiling seq-macro v0.3.5 [INFO] [stderr] Checking strsim v0.11.0 [INFO] [stderr] Checking regex-automata v0.4.5 [INFO] [stderr] Checking bytecount v0.6.7 [INFO] [stderr] Checking log v0.4.20 [INFO] [stderr] Checking nu-ansi-term v0.46.0 [INFO] [stderr] Checking papergrid v0.11.0 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking tracing-log v0.2.0 [INFO] [stderr] Checking chrono v0.4.34 [INFO] [stderr] Checking sharded-slab v0.1.7 [INFO] [stderr] Checking thread_local v1.1.8 [INFO] [stderr] Checking foreign_vec v0.1.0 [INFO] [stderr] Checking indexmap v2.2.3 [INFO] [stderr] Checking dashmap v5.5.3 [INFO] [stderr] Checking terminal_size v0.3.0 [INFO] [stderr] Checking clap_builder v4.5.1 [INFO] [stderr] Checking dyn-clone v1.0.17 [INFO] [stderr] Checking arrayvec v0.7.4 [INFO] [stderr] Checking base64 v0.21.7 [INFO] [stderr] Checking ethnum v1.5.0 [INFO] [stderr] Checking streaming-iterator v0.1.9 [INFO] [stderr] Checking hash_hasher v2.0.3 [INFO] [stderr] Checking ryu v1.0.17 [INFO] [stderr] Checking simdutf8 v0.1.4 [INFO] [stderr] Checking scroll v0.12.0 [INFO] [stderr] Checking regex-automata v0.1.10 [INFO] [stderr] Compiling zstd-sys v2.0.9+zstd.1.5.5 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking num-format v0.4.4 [INFO] [stderr] Checking noodles-csi v0.30.0 [INFO] [stderr] Checking rayon v1.8.1 [INFO] [stderr] Checking atomic_float v0.1.0 [INFO] [stderr] Checking path-tools v0.1.0 [INFO] [stderr] Checking distrs v0.2.1 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling tabled_derive v0.7.0 [INFO] [stderr] Compiling serde_derive v1.0.197 [INFO] [stderr] Compiling futures-macro v0.3.30 [INFO] [stderr] Compiling async-stream-impl v0.3.5 [INFO] [stderr] Compiling thiserror-impl v1.0.57 [INFO] [stderr] Compiling strum_macros v0.25.3 [INFO] [stderr] Compiling bytemuck_derive v1.5.0 [INFO] [stderr] Compiling tracing-attributes v0.1.27 [INFO] [stderr] Checking matchers v0.1.0 [INFO] [stderr] Checking num v0.4.1 [INFO] [stderr] Compiling clap_derive v4.5.0 [INFO] [stderr] Checking regex v1.10.3 [INFO] [stderr] Checking bstr v1.9.1 [INFO] [stderr] Checking tabled v0.15.0 [INFO] [stderr] Checking async-stream v0.3.5 [INFO] [stderr] Checking bytemuck v1.14.3 [INFO] [stderr] Checking noodles-sam v0.53.0 [INFO] [stderr] Checking futures-util v0.3.30 [INFO] [stderr] Checking tracing v0.1.40 [INFO] [stderr] Checking tracing-subscriber v0.3.18 [INFO] [stderr] Checking bio-types v1.0.1 [INFO] [stderr] Checking clap v4.5.1 [INFO] [stderr] Checking noodles-bam v0.56.0 [INFO] [stderr] Checking futures-executor v0.3.30 [INFO] [stderr] Checking futures v0.3.30 [INFO] [stderr] Checking parquet-format-safe v0.2.4 [INFO] [stderr] Checking zstd v0.12.4 [INFO] [stderr] Checking arrow-format v0.8.1 [INFO] [stderr] Checking bincode v1.3.3 [INFO] [stderr] Checking libradicl v0.8.0 (https://github.com/COMBINE-lab/libradicl?branch=develop#aa850182) [INFO] [stderr] Checking parquet2 v0.17.2 [INFO] [stderr] Checking piscem-infer v0.6.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: the item `thread_rng` is imported redundantly [INFO] [stdout] --> src/utils/em.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 3 | use rand::prelude::*; [INFO] [stdout] | ---------------- the item `thread_rng` is already imported here [INFO] [stdout] 4 | use rand::thread_rng; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `thread_rng` is imported redundantly [INFO] [stdout] --> src/utils/em.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 3 | use rand::prelude::*; [INFO] [stdout] | ---------------- the item `thread_rng` is already imported here [INFO] [stdout] 4 | use rand::thread_rng; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `convergence_thresh` is never read [INFO] [stdout] --> src/utils/em.rs:365:9 [INFO] [stdout] | [INFO] [stdout] 361 | pub struct EMInfo<'eqm, 'el> { [INFO] [stdout] | ------ field in this struct [INFO] [stdout] ... [INFO] [stdout] 365 | pub convergence_thresh: f64, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `convergence_thresh` is never read [INFO] [stdout] --> src/utils/em.rs:365:9 [INFO] [stdout] | [INFO] [stdout] 361 | pub struct EMInfo<'eqm, 'el> { [INFO] [stdout] | ------ field in this struct [INFO] [stdout] ... [INFO] [stdout] 365 | pub convergence_thresh: f64, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 00s [INFO] running `Command { std: "docker" "inspect" "eec47c29fae37990fc1b140347895c341be7dbd39b6f4b80f607232e7b04ea42", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "eec47c29fae37990fc1b140347895c341be7dbd39b6f4b80f607232e7b04ea42", kill_on_drop: false }` [INFO] [stdout] eec47c29fae37990fc1b140347895c341be7dbd39b6f4b80f607232e7b04ea42