[INFO] fetching crate spdkit-surface 0.1.1...
[INFO] testing spdkit-surface-0.1.1 against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_with_libc_patch_0
[INFO] extracting crate spdkit-surface 0.1.1 into /workspace/builds/worker-7-tc1/source
[INFO] started tweaking crates.io crate spdkit-surface 0.1.1
[INFO] finished tweaking crates.io crate spdkit-surface 0.1.1
[INFO] tweaked toml for crates.io crate spdkit-surface 0.1.1 written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate spdkit-surface 0.1.1 on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 231 packages to latest compatible versions
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[INFO] [stderr]       Adding rand v0.8.5 (available: v0.9.1)
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[INFO] [stderr]     Blocking waiting for file lock on package cache
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[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded gchemol-gut v0.4.4
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[INFO] [stderr]   Downloaded gchemol-geometry v0.1.1
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[INFO] [stderr]   Downloaded gchemol-lattice v0.1.2
[INFO] [stderr]   Downloaded octree v0.1.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "start" "-a" "f54fd2111fb5f8109ae4ab4f7da528b7e6db7aa5ee173748a495fa4496655890", kill_on_drop: false }`
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[INFO] [stdout] 15ccb6d46a9579eb822a59b14e7f09b68d1d742334456ad2adb33473b477d8c2
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[INFO] [stderr]    Compiling spdkit-surface v0.1.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `gchemol::Lattice`
[INFO] [stdout]  --> src/layers.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 | use gchemol::Lattice;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `gchemol::prelude::*`
[INFO] [stdout]   --> src/lib.rs:11:13
[INFO] [stdout]    |
[INFO] [stdout] 11 |     pub use gchemol::prelude::*;
[INFO] [stdout]    |             ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `gchemol::Atom::label`: use get_label instead
[INFO] [stdout]   --> src/layers.rs:17:33
[INFO] [stdout]    |
[INFO] [stdout] 17 |     mol.atoms().find(|(_, a)| a.label() == format!("{i}")).is_some()
[INFO] [stdout]    |                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `gchemol::Atom::label`: use get_label instead
[INFO] [stdout]   --> src/layers.rs:28:32
[INFO] [stdout]    |
[INFO] [stdout] 28 |     mol.atoms().map(|(_, a)| a.label().parse().unwrap()).collect()
[INFO] [stdout]    |                                ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `n_probes`
[INFO] [stdout]   --> src/probe.rs:71:59
[INFO] [stdout]    |
[INFO] [stdout] 71 | pub fn probe_surface_atoms(mol: &Molecule, r_cutoff: f64, n_probes: usize) -> Result<Vec<usize>> {
[INFO] [stdout]    |                                                           ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_n_probes`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 55.69s
[INFO] running `Command { std: "docker" "inspect" "15ccb6d46a9579eb822a59b14e7f09b68d1d742334456ad2adb33473b477d8c2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "15ccb6d46a9579eb822a59b14e7f09b68d1d742334456ad2adb33473b477d8c2", kill_on_drop: false }`
[INFO] [stdout] 15ccb6d46a9579eb822a59b14e7f09b68d1d742334456ad2adb33473b477d8c2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] 2087d8bfb993127b44c6a13ef8ae3964ce43f64c70d10e8ba894f8d98224eab4
[INFO] running `Command { std: "docker" "start" "-a" "2087d8bfb993127b44c6a13ef8ae3964ce43f64c70d10e8ba894f8d98224eab4", kill_on_drop: false }`
[INFO] [stdout] warning: unused import: `gchemol::Lattice`
[INFO] [stdout]  --> src/layers.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 | use gchemol::Lattice;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `gchemol::prelude::*`
[INFO] [stdout]   --> src/lib.rs:11:13
[INFO] [stdout]    |
[INFO] [stdout] 11 |     pub use gchemol::prelude::*;
[INFO] [stdout]    |             ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `gchemol::Atom::label`: use get_label instead
[INFO] [stdout]   --> src/layers.rs:17:33
[INFO] [stdout]    |
[INFO] [stdout] 17 |     mol.atoms().find(|(_, a)| a.label() == format!("{i}")).is_some()
[INFO] [stdout]    |                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `gchemol::Atom::label`: use get_label instead
[INFO] [stdout]   --> src/layers.rs:28:32
[INFO] [stdout]    |
[INFO] [stdout] 28 |     mol.atoms().map(|(_, a)| a.label().parse().unwrap()).collect()
[INFO] [stdout]    |                                ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `n_probes`
[INFO] [stdout]   --> src/probe.rs:71:59
[INFO] [stdout]    |
[INFO] [stdout] 71 | pub fn probe_surface_atoms(mol: &Molecule, r_cutoff: f64, n_probes: usize) -> Result<Vec<usize>> {
[INFO] [stdout]    |                                                           ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_n_probes`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling spdkit-surface v0.1.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `gchemol::Lattice`
[INFO] [stdout]  --> src/layers.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 | use gchemol::Lattice;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `gchemol::Atom::label`: use get_label instead
[INFO] [stdout]   --> src/layers.rs:17:33
[INFO] [stdout]    |
[INFO] [stdout] 17 |     mol.atoms().find(|(_, a)| a.label() == format!("{i}")).is_some()
[INFO] [stdout]    |                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `gchemol::Atom::label`: use get_label instead
[INFO] [stdout]   --> src/layers.rs:28:32
[INFO] [stdout]    |
[INFO] [stdout] 28 |     mol.atoms().map(|(_, a)| a.label().parse().unwrap()).collect()
[INFO] [stdout]    |                                ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `n_probes`
[INFO] [stdout]   --> src/probe.rs:71:59
[INFO] [stdout]    |
[INFO] [stdout] 71 | pub fn probe_surface_atoms(mol: &Molecule, r_cutoff: f64, n_probes: usize) -> Result<Vec<usize>> {
[INFO] [stdout]    |                                                           ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_n_probes`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 8.07s
[INFO] running `Command { std: "docker" "inspect" "2087d8bfb993127b44c6a13ef8ae3964ce43f64c70d10e8ba894f8d98224eab4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2087d8bfb993127b44c6a13ef8ae3964ce43f64c70d10e8ba894f8d98224eab4", kill_on_drop: false }`
[INFO] [stdout] 2087d8bfb993127b44c6a13ef8ae3964ce43f64c70d10e8ba894f8d98224eab4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] 48da7d83a58f573154b13d940eefa1e0a8aaf6107ec86ff234d9a152affe7298
[INFO] running `Command { std: "docker" "start" "-a" "48da7d83a58f573154b13d940eefa1e0a8aaf6107ec86ff234d9a152affe7298", kill_on_drop: false }`
[INFO] [stderr] warning: unused import: `gchemol::Lattice`
[INFO] [stderr]  --> src/layers.rs:4:5
[INFO] [stderr]   |
[INFO] [stderr] 4 | use gchemol::Lattice;
[INFO] [stderr]   |     ^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `gchemol::prelude::*`
[INFO] [stderr]   --> src/lib.rs:11:13
[INFO] [stderr]    |
[INFO] [stderr] 11 |     pub use gchemol::prelude::*;
[INFO] [stderr]    |             ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated method `gchemol::Atom::label`: use get_label instead
[INFO] [stderr]   --> src/layers.rs:17:33
[INFO] [stderr]    |
[INFO] [stderr] 17 |     mol.atoms().find(|(_, a)| a.label() == format!("{i}")).is_some()
[INFO] [stderr]    |                                 ^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(deprecated)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated method `gchemol::Atom::label`: use get_label instead
[INFO] [stderr]   --> src/layers.rs:28:32
[INFO] [stderr]    |
[INFO] [stderr] 28 |     mol.atoms().map(|(_, a)| a.label().parse().unwrap()).collect()
[INFO] [stderr]    |                                ^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `n_probes`
[INFO] [stderr]   --> src/probe.rs:71:59
[INFO] [stderr]    |
[INFO] [stderr] 71 | pub fn probe_surface_atoms(mol: &Molecule, r_cutoff: f64, n_probes: usize) -> Result<Vec<usize>> {
[INFO] [stderr]    |                                                           ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_n_probes`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `spdkit-surface` (lib) generated 5 warnings (run `cargo fix --lib -p spdkit-surface` to apply 2 suggestions)
[INFO] [stderr] warning: `spdkit-surface` (lib test) generated 4 warnings (4 duplicates)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.24s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/spdkit_surface-8b27fb2714de3b4a)
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test layers::test_atom_layer ... ok
[INFO] [stdout] test probe::test_probe_surface_atoms ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.85s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "48da7d83a58f573154b13d940eefa1e0a8aaf6107ec86ff234d9a152affe7298", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "48da7d83a58f573154b13d940eefa1e0a8aaf6107ec86ff234d9a152affe7298", kill_on_drop: false }`
[INFO] [stdout] 48da7d83a58f573154b13d940eefa1e0a8aaf6107ec86ff234d9a152affe7298