[INFO] fetching crate slow5lib-sys 0.10.0+slow5lib.1.3.0... [INFO] testing slow5lib-sys-0.10.0+slow5lib.1.3.0 against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_with_libc_patch_0 [INFO] extracting crate slow5lib-sys 0.10.0+slow5lib.1.3.0 into /workspace/builds/worker-2-tc1/source [INFO] started tweaking crates.io crate slow5lib-sys 0.10.0+slow5lib.1.3.0 [INFO] removed 0 missing examples [INFO] removed 0 missing tests [INFO] finished tweaking crates.io crate slow5lib-sys 0.10.0+slow5lib.1.3.0 [INFO] tweaked toml for crates.io crate slow5lib-sys 0.10.0+slow5lib.1.3.0 written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate slow5lib-sys 0.10.0+slow5lib.1.3.0 on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate slow5lib-sys 0.10.0+slow5lib.1.3.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: version requirement `2.0.6+zstd.1.5.2` for dependency `zstd-sys` includes semver metadata which will be ignored, removing the metadata is recommended to avoid confusion [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 4c6b1c3eae618c13e26ad760bd4c2e20e7397e123b8b6336922b4dc94616aed7 [INFO] running `Command { std: "docker" "start" "-a" "4c6b1c3eae618c13e26ad760bd4c2e20e7397e123b8b6336922b4dc94616aed7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "4c6b1c3eae618c13e26ad760bd4c2e20e7397e123b8b6336922b4dc94616aed7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4c6b1c3eae618c13e26ad760bd4c2e20e7397e123b8b6336922b4dc94616aed7", kill_on_drop: false }` [INFO] [stdout] 4c6b1c3eae618c13e26ad760bd4c2e20e7397e123b8b6336922b4dc94616aed7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] fa9b22cbc5c486c090cfef7bdd753864d97caab58cd36dbf5b79261fcd452a04 [INFO] running `Command { std: "docker" "start" "-a" "fa9b22cbc5c486c090cfef7bdd753864d97caab58cd36dbf5b79261fcd452a04", kill_on_drop: false }` [INFO] [stderr] warning: version requirement `2.0.6+zstd.1.5.2` for dependency `zstd-sys` includes semver metadata which will be ignored, removing the metadata is recommended to avoid confusion [INFO] [stderr] Compiling libc v0.2.159 [INFO] [stderr] Compiling proc-macro2 v1.0.86 [INFO] [stderr] Compiling pkg-config v0.3.31 [INFO] [stderr] Compiling glob v0.3.1 [INFO] [stderr] Compiling unicode-ident v1.0.13 [INFO] [stderr] Compiling rustix v0.38.37 [INFO] [stderr] Compiling prettyplease v0.2.22 [INFO] [stderr] Compiling linux-raw-sys v0.4.14 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling bitflags v2.6.0 [INFO] [stderr] Compiling memchr v2.7.4 [INFO] [stderr] Compiling libloading v0.8.5 [INFO] [stderr] Compiling either v1.13.0 [INFO] [stderr] Compiling home v0.5.9 [INFO] [stderr] Compiling bindgen v0.66.1 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling log v0.4.22 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling lazy_static v1.5.0 [INFO] [stderr] Compiling dunce v1.0.5 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling quote v1.0.37 [INFO] [stderr] Compiling syn v2.0.79 [INFO] [stderr] Compiling jobserver v0.1.32 [INFO] [stderr] Compiling cc v1.1.23 [INFO] [stderr] Compiling regex-automata v0.4.8 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling which v4.4.2 [INFO] [stderr] Compiling libz-sys v1.1.20 [INFO] [stderr] Compiling zstd-sys v2.0.13+zstd.1.5.6 [INFO] [stderr] Compiling regex v1.11.0 [INFO] [stderr] Compiling slow5lib-sys v0.10.0+slow5lib.1.3.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c: In function 'slow5_init': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c:193:51: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 193 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c: In function 'slow5_init_empty': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c:267:51: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 267 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: In file included from slow5lib/src/slow5.c:44: [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c: In function 'slow5_hdr_init': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:162:24: warning: operand of '?:' changes signedness from 'int' to 'size_t' {aka 'long unsigned int'} due to unsignedness of other operand [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c:823:20: note: in expansion of macro 'SLOW5_FREAD' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 823 | } else if (SLOW5_FREAD(&header->num_read_groups, sizeof header->num_read_groups, 1, fp) != 1) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:162:24: warning: operand of '?:' changes signedness from 'int' to 'size_t' {aka 'long unsigned int'} due to unsignedness of other operand [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c:834:20: note: in expansion of macro 'SLOW5_FREAD' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 834 | } else if (SLOW5_FREAD(&header_size, sizeof header_size, 1, fp) != 1) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c: In function 'slow5_idx_build': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c:189:20: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 189 | if(curr_offset == -1){ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c:216:19: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 216 | if(offset == -1){ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c:242:23: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 242 | if(offset == -1){ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: In file included from slow5lib/src/slow5_idx.c:9: [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c: In function 'slow5_idx_write': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:159:24: warning: operand of '?:' changes signedness from 'int' to 'size_t' {aka 'long unsigned int'} due to unsignedness of other operand [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 159 | ( (slow5_bigend) ? (slow5_fwrite_bigend((ptr), (size), (nitems), (stream))) : (fwrite((ptr), (size), (nitems), (stream))) ) [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c:395:13: note: in expansion of macro 'SLOW5_FWRITE' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 395 | if (SLOW5_FWRITE(&read_id_len, sizeof read_id_len, 1, index->fp) != 1){ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:159:24: warning: operand of '?:' changes signedness from 'int' to 'size_t' {aka 'long unsigned int'} due to unsignedness of other operand [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 159 | ( (slow5_bigend) ? (slow5_fwrite_bigend((ptr), (size), (nitems), (stream))) : (fwrite((ptr), (size), (nitems), (stream))) ) [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c:401:13: note: in expansion of macro 'SLOW5_FWRITE' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 401 | if (SLOW5_FWRITE(&read_index.offset, sizeof read_index.offset, 1, index->fp) != 1 ){ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:159:24: warning: operand of '?:' changes signedness from 'int' to 'size_t' {aka 'long unsigned int'} due to unsignedness of other operand [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 159 | ( (slow5_bigend) ? (slow5_fwrite_bigend((ptr), (size), (nitems), (stream))) : (fwrite((ptr), (size), (nitems), (stream))) ) [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c:404:13: note: in expansion of macro 'SLOW5_FWRITE' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 404 | if (SLOW5_FWRITE(&read_index.size, sizeof read_index.size, 1, index->fp) != 1) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c: In function 'slow5_idx_read': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:162:24: warning: operand of '?:' changes signedness from 'int' to 'size_t' {aka 'long unsigned int'} due to unsignedness of other operand [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c:447:13: note: in expansion of macro 'SLOW5_FREAD' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 447 | if (SLOW5_FREAD(&read_id_len, sizeof read_id_len, 1, index->fp) != 1) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:162:24: warning: operand of '?:' changes signedness from 'int' to 'size_t' {aka 'long unsigned int'} due to unsignedness of other operand [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c:485:13: note: in expansion of macro 'SLOW5_FREAD' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 485 | if (SLOW5_FREAD(&offset, sizeof offset, 1, index->fp) != 1 || [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:162:24: warning: operand of '?:' changes signedness from 'int' to 'size_t' {aka 'long unsigned int'} due to unsignedness of other operand [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c:486:17: note: in expansion of macro 'SLOW5_FREAD' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 486 | SLOW5_FREAD(&size, sizeof size, 1, index->fp) != 1) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c: In function 'slow5_fwrite_compress': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c:586:27: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 586 | if (bytes != size * nmemb || ferror(fp)) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c:587:31: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 587 | if (bytes != size * nmemb) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c: In function 'slow5_pread_depress': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c:692:9: warning: implicit declaration of function 'pread'; did you mean 'fread'? [-Wimplicit-function-declaration] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 692 | if (pread(fd, raw, count, offset) == -1) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | fread [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c: In function 'slow5_pread_depress_solo': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c:714:47: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 714 | if ((ret = pread(fd, raw, count, offset)) != count) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c: In function 'ex_depress': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c:1490:21: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 1490 | if (ret !=nex_pos_press){ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c:1520:21: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 1520 | if (ret != nex_press){ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c: In function 'slow5_get_mem': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c:2467:9: warning: implicit declaration of function 'pread'; did you mean 'fread'? [-Wimplicit-function-declaration] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 2467 | if (pread(s5p->meta.fd, mem, bytes, offset) != bytes) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | fread [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c:2467:49: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 2467 | if (pread(s5p->meta.fd, mem, bytes, offset) != bytes) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c: In function 'slow5_rec_aux_parse': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:204:27: warning: comparison of integer expressions of different signedness: 'int64_t' {aka 'long int'} and 'uint64_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 204 | for(int64_t i=0; i<(nitems); i++){ \ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c:3134:25: note: in expansion of macro 'SLOW5_BYTE_SWAP_ARRAY_VOID' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 3134 | SLOW5_BYTE_SWAP_ARRAY_VOID(data, 2, len); [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c: In function 'slow5_rec_to_mem': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:204:27: warning: comparison of integer expressions of different signedness: 'int64_t' {aka 'long int'} and 'uint64_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 204 | for(int64_t i=0; i<(nitems); i++){ \ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c:3989:66: note: in expansion of macro 'SLOW5_BYTE_SWAP_ARRAY_VOID' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 3989 | memcpy(mem + curr_len, read->raw_signal, bytes_raw_sig); SLOW5_BYTE_SWAP_ARRAY_VOID(mem + curr_len, sizeof *read->raw_signal, read->len_raw_signal); [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:204:27: warning: comparison of integer expressions of different signedness: 'int64_t' {aka 'long int'} and 'uint64_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 204 | for(int64_t i=0; i<(nitems); i++){ \ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c:4032:29: note: in expansion of macro 'SLOW5_BYTE_SWAP_ARRAY_VOID' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 4032 | SLOW5_BYTE_SWAP_ARRAY_VOID(mem + curr_len, 2, aux_data.len); [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 32.96s [INFO] running `Command { std: "docker" "inspect" "fa9b22cbc5c486c090cfef7bdd753864d97caab58cd36dbf5b79261fcd452a04", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fa9b22cbc5c486c090cfef7bdd753864d97caab58cd36dbf5b79261fcd452a04", kill_on_drop: false }` [INFO] [stdout] fa9b22cbc5c486c090cfef7bdd753864d97caab58cd36dbf5b79261fcd452a04 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] ec86fe72976e065bc9f97fb3e0206735bc4efbbcc83fe25d6f4b2725bc87e0f5 [INFO] running `Command { std: "docker" "start" "-a" "ec86fe72976e065bc9f97fb3e0206735bc4efbbcc83fe25d6f4b2725bc87e0f5", kill_on_drop: false }` [INFO] [stderr] warning: version requirement `2.0.6+zstd.1.5.2` for dependency `zstd-sys` includes semver metadata which will be ignored, removing the metadata is recommended to avoid confusion [INFO] [stderr] Compiling proc-macro2 v1.0.86 [INFO] [stderr] Compiling serde v1.0.210 [INFO] [stderr] Compiling unicase v2.7.0 [INFO] [stderr] Compiling tinyvec v1.8.0 [INFO] [stderr] Compiling hashbrown v0.14.5 [INFO] [stderr] Compiling unicode-ident v1.0.13 [INFO] [stderr] Compiling winnow v0.5.40 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling semver v1.0.23 [INFO] [stderr] Compiling pulldown-cmark v0.9.6 [INFO] [stderr] Compiling unicode-bidi v0.3.15 [INFO] [stderr] Compiling bitflags v2.6.0 [INFO] [stderr] Compiling memchr v2.7.4 [INFO] [stderr] Compiling quote v1.0.37 [INFO] [stderr] Compiling syn v2.0.79 [INFO] [stderr] Compiling indexmap v2.5.0 [INFO] [stderr] Compiling unicode-normalization v0.1.24 [INFO] [stderr] Compiling cstr v0.2.12 [INFO] [stderr] Compiling idna v0.5.0 [INFO] [stderr] Compiling regex-automata v0.4.8 [INFO] [stderr] Compiling url v2.5.2 [INFO] [stderr] Compiling regex v1.11.0 [INFO] [stderr] Compiling toml_datetime v0.6.8 [INFO] [stderr] Compiling serde_spanned v0.6.8 [INFO] [stderr] Compiling toml_edit v0.19.15 [INFO] [stderr] Compiling prettyplease v0.2.22 [INFO] [stderr] Compiling bindgen v0.66.1 [INFO] [stderr] Compiling toml v0.7.8 [INFO] [stderr] Compiling version-sync v0.9.5 [INFO] [stderr] Compiling slow5lib-sys v0.10.0+slow5lib.1.3.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c: In function 'slow5_init': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c:193:51: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 193 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c: In function 'slow5_init_empty': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c:267:51: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 267 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: In file included from slow5lib/src/slow5.c:44: [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c: In function 'slow5_hdr_init': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:162:24: warning: operand of '?:' changes signedness from 'int' to 'size_t' {aka 'long unsigned int'} due to unsignedness of other operand [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c:823:20: note: in expansion of macro 'SLOW5_FREAD' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 823 | } else if (SLOW5_FREAD(&header->num_read_groups, sizeof header->num_read_groups, 1, fp) != 1) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:162:24: warning: operand of '?:' changes signedness from 'int' to 'size_t' {aka 'long unsigned int'} due to unsignedness of other operand [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c:834:20: note: in expansion of macro 'SLOW5_FREAD' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 834 | } else if (SLOW5_FREAD(&header_size, sizeof header_size, 1, fp) != 1) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c: In function 'slow5_get_mem': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c:2467:9: warning: implicit declaration of function 'pread'; did you mean 'fread'? [-Wimplicit-function-declaration] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 2467 | if (pread(s5p->meta.fd, mem, bytes, offset) != bytes) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | fread [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c:2467:49: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 2467 | if (pread(s5p->meta.fd, mem, bytes, offset) != bytes) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c: In function 'slow5_rec_aux_parse': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:204:27: warning: comparison of integer expressions of different signedness: 'int64_t' {aka 'long int'} and 'uint64_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 204 | for(int64_t i=0; i<(nitems); i++){ \ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c:3134:25: note: in expansion of macro 'SLOW5_BYTE_SWAP_ARRAY_VOID' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 3134 | SLOW5_BYTE_SWAP_ARRAY_VOID(data, 2, len); [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c: In function 'slow5_idx_build': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c:189:20: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 189 | if(curr_offset == -1){ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c:216:19: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 216 | if(offset == -1){ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c:242:23: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 242 | if(offset == -1){ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: In file included from slow5lib/src/slow5_idx.c:9: [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c: In function 'slow5_idx_write': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:159:24: warning: operand of '?:' changes signedness from 'int' to 'size_t' {aka 'long unsigned int'} due to unsignedness of other operand [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 159 | ( (slow5_bigend) ? (slow5_fwrite_bigend((ptr), (size), (nitems), (stream))) : (fwrite((ptr), (size), (nitems), (stream))) ) [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c:395:13: note: in expansion of macro 'SLOW5_FWRITE' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 395 | if (SLOW5_FWRITE(&read_id_len, sizeof read_id_len, 1, index->fp) != 1){ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:159:24: warning: operand of '?:' changes signedness from 'int' to 'size_t' {aka 'long unsigned int'} due to unsignedness of other operand [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 159 | ( (slow5_bigend) ? (slow5_fwrite_bigend((ptr), (size), (nitems), (stream))) : (fwrite((ptr), (size), (nitems), (stream))) ) [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c:401:13: note: in expansion of macro 'SLOW5_FWRITE' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 401 | if (SLOW5_FWRITE(&read_index.offset, sizeof read_index.offset, 1, index->fp) != 1 ){ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:159:24: warning: operand of '?:' changes signedness from 'int' to 'size_t' {aka 'long unsigned int'} due to unsignedness of other operand [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 159 | ( (slow5_bigend) ? (slow5_fwrite_bigend((ptr), (size), (nitems), (stream))) : (fwrite((ptr), (size), (nitems), (stream))) ) [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c:404:13: note: in expansion of macro 'SLOW5_FWRITE' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 404 | if (SLOW5_FWRITE(&read_index.size, sizeof read_index.size, 1, index->fp) != 1) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c: In function 'slow5_idx_read': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:162:24: warning: operand of '?:' changes signedness from 'int' to 'size_t' {aka 'long unsigned int'} due to unsignedness of other operand [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c:447:13: note: in expansion of macro 'SLOW5_FREAD' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 447 | if (SLOW5_FREAD(&read_id_len, sizeof read_id_len, 1, index->fp) != 1) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:162:24: warning: operand of '?:' changes signedness from 'int' to 'size_t' {aka 'long unsigned int'} due to unsignedness of other operand [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c:485:13: note: in expansion of macro 'SLOW5_FREAD' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 485 | if (SLOW5_FREAD(&offset, sizeof offset, 1, index->fp) != 1 || [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:162:24: warning: operand of '?:' changes signedness from 'int' to 'size_t' {aka 'long unsigned int'} due to unsignedness of other operand [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c:486:17: note: in expansion of macro 'SLOW5_FREAD' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 486 | SLOW5_FREAD(&size, sizeof size, 1, index->fp) != 1) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c: In function 'slow5_fwrite_compress': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c:586:27: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 586 | if (bytes != size * nmemb || ferror(fp)) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c:587:31: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 587 | if (bytes != size * nmemb) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c: In function 'slow5_pread_depress': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c:692:9: warning: implicit declaration of function 'pread'; did you mean 'fread'? [-Wimplicit-function-declaration] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 692 | if (pread(fd, raw, count, offset) == -1) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | fread [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c: In function 'slow5_pread_depress_solo': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c:714:47: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 714 | if ((ret = pread(fd, raw, count, offset)) != count) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c: In function 'ex_depress': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c:1490:21: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 1490 | if (ret !=nex_pos_press){ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c:1520:21: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 1520 | if (ret != nex_press){ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c: In function 'slow5_rec_to_mem': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:204:27: warning: comparison of integer expressions of different signedness: 'int64_t' {aka 'long int'} and 'uint64_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 204 | for(int64_t i=0; i<(nitems); i++){ \ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c:3989:66: note: in expansion of macro 'SLOW5_BYTE_SWAP_ARRAY_VOID' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 3989 | memcpy(mem + curr_len, read->raw_signal, bytes_raw_sig); SLOW5_BYTE_SWAP_ARRAY_VOID(mem + curr_len, sizeof *read->raw_signal, read->len_raw_signal); [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:204:27: warning: comparison of integer expressions of different signedness: 'int64_t' {aka 'long int'} and 'uint64_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 204 | for(int64_t i=0; i<(nitems); i++){ \ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c:4032:29: note: in expansion of macro 'SLOW5_BYTE_SWAP_ARRAY_VOID' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 4032 | SLOW5_BYTE_SWAP_ARRAY_VOID(mem + curr_len, 2, aux_data.len); [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 28.06s [INFO] running `Command { std: "docker" "inspect" "ec86fe72976e065bc9f97fb3e0206735bc4efbbcc83fe25d6f4b2725bc87e0f5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ec86fe72976e065bc9f97fb3e0206735bc4efbbcc83fe25d6f4b2725bc87e0f5", kill_on_drop: false }` [INFO] [stdout] ec86fe72976e065bc9f97fb3e0206735bc4efbbcc83fe25d6f4b2725bc87e0f5 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 8909f2a63362714088ff37f28a370021c0b0c562066b37c0785807ab01f0340a [INFO] running `Command { std: "docker" "start" "-a" "8909f2a63362714088ff37f28a370021c0b0c562066b37c0785807ab01f0340a", kill_on_drop: false }` [INFO] [stderr] warning: version requirement `2.0.6+zstd.1.5.2` for dependency `zstd-sys` includes semver metadata which will be ignored, removing the metadata is recommended to avoid confusion [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c: In function 'slow5_init': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c:193:51: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 193 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c: In function 'slow5_init_empty': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c:267:51: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 267 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: In file included from slow5lib/src/slow5.c:44: [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c: In function 'slow5_hdr_init': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:162:24: warning: operand of '?:' changes signedness from 'int' to 'size_t' {aka 'long unsigned int'} due to unsignedness of other operand [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c:823:20: note: in expansion of macro 'SLOW5_FREAD' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 823 | } else if (SLOW5_FREAD(&header->num_read_groups, sizeof header->num_read_groups, 1, fp) != 1) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:162:24: warning: operand of '?:' changes signedness from 'int' to 'size_t' {aka 'long unsigned int'} due to unsignedness of other operand [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c:834:20: note: in expansion of macro 'SLOW5_FREAD' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 834 | } else if (SLOW5_FREAD(&header_size, sizeof header_size, 1, fp) != 1) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c: In function 'slow5_get_mem': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c:2467:9: warning: implicit declaration of function 'pread'; did you mean 'fread'? [-Wimplicit-function-declaration] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 2467 | if (pread(s5p->meta.fd, mem, bytes, offset) != bytes) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | fread [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c:2467:49: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 2467 | if (pread(s5p->meta.fd, mem, bytes, offset) != bytes) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c: In function 'slow5_rec_aux_parse': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:204:27: warning: comparison of integer expressions of different signedness: 'int64_t' {aka 'long int'} and 'uint64_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 204 | for(int64_t i=0; i<(nitems); i++){ \ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c:3134:25: note: in expansion of macro 'SLOW5_BYTE_SWAP_ARRAY_VOID' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 3134 | SLOW5_BYTE_SWAP_ARRAY_VOID(data, 2, len); [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c: In function 'slow5_idx_build': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c:189:20: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 189 | if(curr_offset == -1){ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c:216:19: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 216 | if(offset == -1){ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c:242:23: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 242 | if(offset == -1){ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: In file included from slow5lib/src/slow5_idx.c:9: [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c: In function 'slow5_idx_write': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:159:24: warning: operand of '?:' changes signedness from 'int' to 'size_t' {aka 'long unsigned int'} due to unsignedness of other operand [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 159 | ( (slow5_bigend) ? (slow5_fwrite_bigend((ptr), (size), (nitems), (stream))) : (fwrite((ptr), (size), (nitems), (stream))) ) [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c:395:13: note: in expansion of macro 'SLOW5_FWRITE' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 395 | if (SLOW5_FWRITE(&read_id_len, sizeof read_id_len, 1, index->fp) != 1){ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:159:24: warning: operand of '?:' changes signedness from 'int' to 'size_t' {aka 'long unsigned int'} due to unsignedness of other operand [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 159 | ( (slow5_bigend) ? (slow5_fwrite_bigend((ptr), (size), (nitems), (stream))) : (fwrite((ptr), (size), (nitems), (stream))) ) [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c:401:13: note: in expansion of macro 'SLOW5_FWRITE' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 401 | if (SLOW5_FWRITE(&read_index.offset, sizeof read_index.offset, 1, index->fp) != 1 ){ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:159:24: warning: operand of '?:' changes signedness from 'int' to 'size_t' {aka 'long unsigned int'} due to unsignedness of other operand [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 159 | ( (slow5_bigend) ? (slow5_fwrite_bigend((ptr), (size), (nitems), (stream))) : (fwrite((ptr), (size), (nitems), (stream))) ) [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c:404:13: note: in expansion of macro 'SLOW5_FWRITE' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 404 | if (SLOW5_FWRITE(&read_index.size, sizeof read_index.size, 1, index->fp) != 1) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c: In function 'slow5_idx_read': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:162:24: warning: operand of '?:' changes signedness from 'int' to 'size_t' {aka 'long unsigned int'} due to unsignedness of other operand [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c:447:13: note: in expansion of macro 'SLOW5_FREAD' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 447 | if (SLOW5_FREAD(&read_id_len, sizeof read_id_len, 1, index->fp) != 1) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:162:24: warning: operand of '?:' changes signedness from 'int' to 'size_t' {aka 'long unsigned int'} due to unsignedness of other operand [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c:485:13: note: in expansion of macro 'SLOW5_FREAD' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 485 | if (SLOW5_FREAD(&offset, sizeof offset, 1, index->fp) != 1 || [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:162:24: warning: operand of '?:' changes signedness from 'int' to 'size_t' {aka 'long unsigned int'} due to unsignedness of other operand [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_idx.c:486:17: note: in expansion of macro 'SLOW5_FREAD' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 486 | SLOW5_FREAD(&size, sizeof size, 1, index->fp) != 1) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c: In function 'slow5_fwrite_compress': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c:586:27: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 586 | if (bytes != size * nmemb || ferror(fp)) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c:587:31: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 587 | if (bytes != size * nmemb) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c: In function 'slow5_pread_depress': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c:692:9: warning: implicit declaration of function 'pread'; did you mean 'fread'? [-Wimplicit-function-declaration] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 692 | if (pread(fd, raw, count, offset) == -1) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | fread [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c: In function 'slow5_pread_depress_solo': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c:714:47: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 714 | if ((ret = pread(fd, raw, count, offset)) != count) { [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c: In function 'ex_depress': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c:1490:21: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 1490 | if (ret !=nex_pos_press){ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_press.c:1520:21: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 1520 | if (ret != nex_press){ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c: In function 'slow5_rec_to_mem': [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:204:27: warning: comparison of integer expressions of different signedness: 'int64_t' {aka 'long int'} and 'uint64_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 204 | for(int64_t i=0; i<(nitems); i++){ \ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c:3989:66: note: in expansion of macro 'SLOW5_BYTE_SWAP_ARRAY_VOID' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 3989 | memcpy(mem + curr_len, read->raw_signal, bytes_raw_sig); SLOW5_BYTE_SWAP_ARRAY_VOID(mem + curr_len, sizeof *read->raw_signal, read->len_raw_signal); [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5_byte.h:204:27: warning: comparison of integer expressions of different signedness: 'int64_t' {aka 'long int'} and 'uint64_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 204 | for(int64_t i=0; i<(nitems); i++){ \ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^ [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: slow5lib/src/slow5.c:4032:29: note: in expansion of macro 'SLOW5_BYTE_SWAP_ARRAY_VOID' [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: 4032 | SLOW5_BYTE_SWAP_ARRAY_VOID(mem + curr_len, 2, aux_data.len); [INFO] [stderr] warning: slow5lib-sys@0.10.0+slow5lib.1.3.0: | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.08s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/slow5lib_sys-5033eadeef33ff3a) [INFO] [stdout] [INFO] [stdout] running 26 tests [INFO] [stdout] test bindgen_test_layout___slow5_press ... ok [INFO] [stdout] test bindgen_test_layout___va_list_tag ... ok [INFO] [stdout] test bindgen_test_layout_kh_slow5_s2a_s ... ok [INFO] [stdout] test bindgen_test_layout_kh_slow5_s2i_s ... ok [INFO] [stdout] test bindgen_test_layout_kh_slow5_s2s_s ... ok [INFO] [stdout] test bindgen_test_layout_kh_slow5_s2ui32_s ... ok [INFO] [stdout] test bindgen_test_layout_kh_slow5_s_s ... ok [INFO] [stdout] test bindgen_test_layout_slow5_aux_meta ... ok [INFO] [stdout] test bindgen_test_layout_slow5_aux_type_meta ... ok [INFO] [stdout] test bindgen_test_layout_slow5_file ... ok [INFO] [stdout] test bindgen_test_layout_slow5_file_meta ... ok [INFO] [stdout] test bindgen_test_layout_ks_isort_stack_t ... ok [INFO] [stdout] test bindgen_test_layout_slow5_fmt_meta ... ok [INFO] [stdout] test bindgen_test_layout_slow5_hdr ... ok [INFO] [stdout] test bindgen_test_layout_slow5_hdr_data ... ok [INFO] [stdout] test bindgen_test_layout_slow5_hdr_data__bindgen_ty_1 ... ok [INFO] [stdout] test bindgen_test_layout_slow5_idx ... ok [INFO] [stdout] test bindgen_test_layout_slow5_press ... ok [INFO] [stdout] test bindgen_test_layout_slow5_press_method_t ... ok [INFO] [stdout] test bindgen_test_layout_slow5_press_stream ... ok [INFO] [stdout] test bindgen_test_layout_slow5_rec ... ok [INFO] [stdout] test bindgen_test_layout_slow5_rec_aux_data ... ok [INFO] [stdout] test bindgen_test_layout_slow5_rec_idx ... ok [INFO] [stdout] test bindgen_test_layout_slow5_version ... ok [INFO] [stdout] test bindgen_test_layout_slow5_zlib_stream ... ok [INFO] [stdout] test tests::test_slow5_open ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 26 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running tests/version.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/version-3851bb869208b91b) [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test test_readme_deps ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "8909f2a63362714088ff37f28a370021c0b0c562066b37c0785807ab01f0340a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8909f2a63362714088ff37f28a370021c0b0c562066b37c0785807ab01f0340a", kill_on_drop: false }` [INFO] [stdout] 8909f2a63362714088ff37f28a370021c0b0c562066b37c0785807ab01f0340a