[INFO] fetching crate sequintools 0.8.2...
[INFO] testing sequintools-0.8.2 against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_with_libc_patch_0
[INFO] extracting crate sequintools 0.8.2 into /workspace/builds/worker-6-tc1/source
[INFO] started tweaking crates.io crate sequintools 0.8.2
[INFO] finished tweaking crates.io crate sequintools 0.8.2
[INFO] tweaked toml for crates.io crate sequintools 0.8.2 written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate sequintools 0.8.2 on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate sequintools 0.8.2 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded wit-bindgen-rt v0.33.0
[INFO] [stderr]   Downloaded thiserror v2.0.3
[INFO] [stderr]   Downloaded rand_core v0.9.0
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded rust-htslib v0.49.0
[INFO] [stderr]   Downloaded anstyle-query v1.0.0
[INFO] [stderr]   Downloaded anstyle-parse v0.2.1
[INFO] [stderr]   Downloaded csv-core v0.1.11
[INFO] [stderr]   Downloaded cc v1.1.18
[INFO] [stderr]   Downloaded unicode-ident v1.0.11
[INFO] [stderr]   Downloaded clap_builder v4.5.38
[INFO] [stderr]   Downloaded rand_pcg v0.9.0
[INFO] [stderr]   Downloaded serde v1.0.185
[INFO] [stderr]   Downloaded openssl-sys v0.9.90
[INFO] [stderr]   Downloaded zerocopy-derive v0.8.14
[INFO] [stderr]   Downloaded regex v1.9.1
[INFO] [stderr]   Downloaded aho-corasick v1.0.2
[INFO] [stderr]   Downloaded syn v2.0.87
[INFO] [stderr]   Downloaded rustix v1.0.1
[INFO] [stderr]   Downloaded thiserror v1.0.44
[INFO] [stderr]   Downloaded zerocopy v0.8.14
[INFO] [stderr]   Downloaded bindgen v0.69.4
[INFO] [stderr]   Downloaded derive-new v0.7.0
[INFO] [stderr]   Downloaded libloading v0.8.5
[INFO] [stderr]   Downloaded quick-error v1.2.3
[INFO] [stderr]   Downloaded regex-automata v0.3.3
[INFO] [stderr]   Downloaded glob v0.3.1
[INFO] [stderr]   Downloaded jobserver v0.1.32
[INFO] [stderr]   Downloaded regex-syntax v0.7.4
[INFO] [stderr]   Downloaded pkg-config v0.3.27
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded proc-macro2 v1.0.89
[INFO] [stderr]   Downloaded thiserror-impl v2.0.3
[INFO] [stderr]   Downloaded clap v4.5.38
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded rustversion v1.0.14
[INFO] [stderr]   Downloaded strum_macros v0.24.3
[INFO] [stderr]   Downloaded thiserror-impl v1.0.44
[INFO] [stderr]   Downloaded bio-types v1.0.0
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded csv v1.3.1
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded wasi v0.13.3+wasi-0.2.2
[INFO] [stderr]   Downloaded getrandom v0.3.1
[INFO] [stderr]   Downloaded bitflags v2.4.0
[INFO] [stderr]   Downloaded errno v0.3.10
[INFO] [stderr]   Downloaded libz-sys v1.1.20
[INFO] [stderr]   Downloaded curl-sys v0.4.78+curl-8.11.0
[INFO] [stderr]   Downloaded linux-raw-sys v0.9.2
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] [stderr]   Downloaded openssl-src v111.26.0+1.1.1u
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 82611b3ab09ab20e9596086f853d6cd68d9662f67ede10b6ead0423e23a2dc47
[INFO] running `Command { std: "docker" "start" "-a" "82611b3ab09ab20e9596086f853d6cd68d9662f67ede10b6ead0423e23a2dc47", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "82611b3ab09ab20e9596086f853d6cd68d9662f67ede10b6ead0423e23a2dc47", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "82611b3ab09ab20e9596086f853d6cd68d9662f67ede10b6ead0423e23a2dc47", kill_on_drop: false }`
[INFO] [stdout] 82611b3ab09ab20e9596086f853d6cd68d9662f67ede10b6ead0423e23a2dc47
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] 07de1dbe55d5166f4f1a97417beeade3f3d7b9acf9d213d693ef74c1e36c382c
[INFO] running `Command { std: "docker" "start" "-a" "07de1dbe55d5166f4f1a97417beeade3f3d7b9acf9d213d693ef74c1e36c382c", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.169
[INFO] [stderr]    Compiling proc-macro2 v1.0.89
[INFO] [stderr]    Compiling unicode-ident v1.0.11
[INFO] [stderr]    Compiling pkg-config v0.3.27
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]    Compiling glob v0.3.1
[INFO] [stderr]    Compiling vcpkg v0.2.15
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling regex-syntax v0.7.4
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling bindgen v0.69.4
[INFO] [stderr]    Compiling getrandom v0.3.1
[INFO] [stderr]    Compiling either v1.13.0
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling zerocopy v0.8.14
[INFO] [stderr]    Compiling libloading v0.8.5
[INFO] [stderr]    Compiling rustversion v1.0.14
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling tinyvec_macros v0.1.1
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling bitflags v2.4.0
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling jobserver v0.1.32
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling cc v1.1.18
[INFO] [stderr]    Compiling aho-corasick v1.0.2
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling tinyvec v1.6.0
[INFO] [stderr]    Compiling regex-automata v0.3.3
[INFO] [stderr]    Compiling thiserror v1.0.44
[INFO] [stderr]    Compiling utf8parse v0.2.1
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling anstyle-parse v0.2.1
[INFO] [stderr]    Compiling quote v1.0.37
[INFO] [stderr]    Compiling is_terminal_polyfill v1.70.1
[INFO] [stderr]    Compiling cmake v0.1.50
[INFO] [stderr]    Compiling openssl-src v111.26.0+1.1.1u
[INFO] [stderr]    Compiling syn v2.0.87
[INFO] [stderr]    Compiling unicode-normalization v0.1.22
[INFO] [stderr]    Compiling percent-encoding v2.3.0
[INFO] [stderr]    Compiling unicode-bidi v0.3.13
[INFO] [stderr]    Compiling heck v0.4.1
[INFO] [stderr]    Compiling thiserror v2.0.3
[INFO] [stderr]    Compiling serde v1.0.185
[INFO] [stderr]    Compiling colorchoice v1.0.0
[INFO] [stderr]    Compiling rand_core v0.9.0
[INFO] [stderr]    Compiling anstyle-query v1.0.0
[INFO] [stderr]    Compiling regex v1.9.1
[INFO] [stderr]    Compiling anstream v0.6.18
[INFO] [stderr]    Compiling form_urlencoded v1.2.0
[INFO] [stderr]    Compiling clap_lex v0.7.4
[INFO] [stderr]    Compiling anyhow v1.0.98
[INFO] [stderr]    Compiling strsim v0.11.1
[INFO] [stderr]    Compiling idna v0.4.0
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]    Compiling ppv-lite86 v0.2.17
[INFO] [stderr]    Compiling rand_chacha v0.9.0
[INFO] [stderr]    Compiling url v2.4.0
[INFO] [stderr]    Compiling clap_builder v4.5.38
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling openssl-sys v0.9.90
[INFO] [stderr]    Compiling libz-sys v1.1.20
[INFO] [stderr]    Compiling curl-sys v0.4.78+curl-8.11.0
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling csv-core v0.1.11
[INFO] [stderr]    Compiling ryu v1.0.18
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling byteorder v1.4.3
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling itoa v1.0.11
[INFO] [stderr]    Compiling rand v0.9.1
[INFO] [stderr]    Compiling rand_pcg v0.9.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.24.3
[INFO] [stderr]    Compiling csv v1.3.1
[INFO] [stderr]    Compiling thiserror-impl v1.0.44
[INFO] [stderr]    Compiling thiserror-impl v2.0.3
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]    Compiling clap_derive v4.5.32
[INFO] [stderr]    Compiling bio-types v1.0.0
[INFO] [stderr]    Compiling clap v4.5.38
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]    Compiling rust-htslib v0.49.0
[INFO] [stderr]    Compiling sequintools v0.8.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 09s
[INFO] running `Command { std: "docker" "inspect" "07de1dbe55d5166f4f1a97417beeade3f3d7b9acf9d213d693ef74c1e36c382c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "07de1dbe55d5166f4f1a97417beeade3f3d7b9acf9d213d693ef74c1e36c382c", kill_on_drop: false }`
[INFO] [stdout] 07de1dbe55d5166f4f1a97417beeade3f3d7b9acf9d213d693ef74c1e36c382c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] 060077180a56689fac3f427124963ca5ac62e1b426b427bfbc86d8052c5951ec
[INFO] running `Command { std: "docker" "start" "-a" "060077180a56689fac3f427124963ca5ac62e1b426b427bfbc86d8052c5951ec", kill_on_drop: false }`
[INFO] [stderr]    Compiling rustix v1.0.1
[INFO] [stderr]    Compiling linux-raw-sys v0.9.2
[INFO] [stderr]    Compiling bitflags v2.4.0
[INFO] [stderr]    Compiling fastrand v2.3.0
[INFO] [stderr]    Compiling once_cell v1.20.2
[INFO] [stderr]    Compiling tempfile v3.20.0
[INFO] [stderr]    Compiling sequintools v0.8.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 7.87s
[INFO] running `Command { std: "docker" "inspect" "060077180a56689fac3f427124963ca5ac62e1b426b427bfbc86d8052c5951ec", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "060077180a56689fac3f427124963ca5ac62e1b426b427bfbc86d8052c5951ec", kill_on_drop: false }`
[INFO] [stdout] 060077180a56689fac3f427124963ca5ac62e1b426b427bfbc86d8052c5951ec
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] 78e664af72ff13d49b6045eaf85e2a17d62f86366d19ca4c694b74341b17f809
[INFO] running `Command { std: "docker" "start" "-a" "78e664af72ff13d49b6045eaf85e2a17d62f86366d19ca4c694b74341b17f809", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.22s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/sequintools-ba02c4dc8f8cafb1)
[INFO] [stdout] 
[INFO] [stdout] running 51 tests
[INFO] [stdout] test bedcov::tests::build_line ... ok
[INFO] [stdout] test bedcov::tests::bedcov_with_wrong_bam_path ... ok
[INFO] [stdout] test calibrate::tests::test_calibrate_by_standard_coverage_missing_bam ... ok
[INFO] [stdout] test calibrate::tests::test_calibrate_experimental_missing_sample_bed ... ok
[INFO] [stdout] test calibrate::tests::test_calibrated_error ... ok
[INFO] [stdout] test calibrate::tests::test_calibrated_contigs ... ok
[INFO] [stdout] chrom,beg,end,name,len,min,max,mean,std,cv
[INFO] [stdout] chrQ_mirror,100,1000,decoy,900,0,0,0,0,NaN
[INFO] [stdout] test calibrate::tests::test_choose_from ... ok
[INFO] [stdout] test bedcov::tests::bedcov_with_invalid_bed_path ... ok
[INFO] [stderr] error: test failed, to rerun pass `--bin sequintools`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/sequintools-ba02c4dc8f8cafb1` (signal: 11, SIGSEGV: invalid memory reference)
[INFO] running `Command { std: "docker" "inspect" "78e664af72ff13d49b6045eaf85e2a17d62f86366d19ca4c694b74341b17f809", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "78e664af72ff13d49b6045eaf85e2a17d62f86366d19ca4c694b74341b17f809", kill_on_drop: false }`
[INFO] [stdout] 78e664af72ff13d49b6045eaf85e2a17d62f86366d19ca4c694b74341b17f809