[INFO] fetching crate rumina 0.9.7... [INFO] testing rumina-0.9.7 against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_with_libc_patch_0 [INFO] extracting crate rumina 0.9.7 into /workspace/builds/worker-7-tc1/source [INFO] started tweaking crates.io crate rumina 0.9.7 [INFO] finished tweaking crates.io crate rumina 0.9.7 [INFO] tweaked toml for crates.io crate rumina 0.9.7 written to /workspace/builds/worker-7-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate rumina 0.9.7 on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate rumina 0.9.7 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded bio-types v1.0.2 [INFO] [stderr] Downloaded linear-map v1.2.0 [INFO] [stderr] Downloaded derive-new v0.5.9 [INFO] [stderr] Downloaded rust-htslib v0.47.0 [INFO] [stderr] Downloaded curl-sys v0.4.74+curl-8.9.0 [INFO] [stderr] Downloaded hts-sys v2.1.4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 6ad352b43495cf2ddb7ce873f4c933fddaa39cfe3526a75b9f5bf44b43e4ccb3 [INFO] running `Command { std: "docker" "start" "-a" "6ad352b43495cf2ddb7ce873f4c933fddaa39cfe3526a75b9f5bf44b43e4ccb3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "6ad352b43495cf2ddb7ce873f4c933fddaa39cfe3526a75b9f5bf44b43e4ccb3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6ad352b43495cf2ddb7ce873f4c933fddaa39cfe3526a75b9f5bf44b43e4ccb3", kill_on_drop: false }` [INFO] [stdout] 6ad352b43495cf2ddb7ce873f4c933fddaa39cfe3526a75b9f5bf44b43e4ccb3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 4bea3efd206a7239fa867eef32b5343d1bfd60ee1cc9c075323694cb24827850 [INFO] running `Command { std: "docker" "start" "-a" "4bea3efd206a7239fa867eef32b5343d1bfd60ee1cc9c075323694cb24827850", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.153 [INFO] [stderr] Compiling proc-macro2 v1.0.93 [INFO] [stderr] Compiling unicode-ident v1.0.12 [INFO] [stderr] Compiling autocfg v1.3.0 [INFO] [stderr] Compiling pkg-config v0.3.30 [INFO] [stderr] Compiling libm v0.2.11 [INFO] [stderr] Compiling crossbeam-utils v0.8.19 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling glob v0.3.1 [INFO] [stderr] Compiling memchr v2.7.4 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling quote v1.0.36 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Compiling jobserver v0.1.32 [INFO] [stderr] Compiling syn v2.0.96 [INFO] [stderr] Compiling getrandom v0.2.14 [INFO] [stderr] Compiling crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling cc v1.1.13 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling regex-syntax v0.8.4 [INFO] [stderr] Compiling serde v1.0.217 [INFO] [stderr] Compiling crossbeam-deque v0.8.5 [INFO] [stderr] Compiling libloading v0.8.5 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling ppv-lite86 v0.2.17 [INFO] [stderr] Compiling rustversion v1.0.17 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling bindgen v0.69.4 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Compiling bytemuck v1.21.0 [INFO] [stderr] Compiling cmake v0.1.51 [INFO] [stderr] Compiling openssl-src v300.3.1+3.3.1 [INFO] [stderr] Compiling either v1.12.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling regex-automata v0.4.7 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling tinyvec_macros v0.1.1 [INFO] [stderr] Compiling libz-sys v1.1.20 [INFO] [stderr] Compiling openssl-sys v0.9.103 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling curl-sys v0.4.74+curl-8.9.0 [INFO] [stderr] Compiling regex v1.10.6 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling typenum v1.17.0 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling bitflags v2.5.0 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling thiserror v1.0.63 [INFO] [stderr] Compiling rustix v0.38.34 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling tinyvec v1.8.0 [INFO] [stderr] Compiling serde_derive v1.0.217 [INFO] [stderr] Compiling thiserror-impl v1.0.63 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling wide v0.7.32 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling linux-raw-sys v0.4.15 [INFO] [stderr] Compiling utf8parse v0.2.1 [INFO] [stderr] Compiling anstyle-parse v0.2.4 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling simba v0.8.1 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling unicode-normalization v0.1.23 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Compiling tikv-jemalloc-sys v0.5.4+5.3.0-patched [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling lock_api v0.4.12 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling hashbrown v0.14.5 [INFO] [stderr] Compiling portable-atomic v1.9.0 [INFO] [stderr] Compiling hts-sys v2.1.4 [INFO] [stderr] Compiling colorchoice v1.0.1 [INFO] [stderr] Compiling percent-encoding v2.3.1 [INFO] [stderr] Compiling anstyle v1.0.7 [INFO] [stderr] Compiling parking_lot_core v0.9.10 [INFO] [stderr] Compiling is_terminal_polyfill v1.70.0 [INFO] [stderr] Compiling unicode-bidi v0.3.15 [INFO] [stderr] Compiling anyhow v1.0.95 [INFO] [stderr] Compiling itoa v1.0.11 [INFO] [stderr] Compiling anstyle-query v1.0.3 [INFO] [stderr] Compiling equivalent v1.0.1 [INFO] [stderr] Compiling anstream v0.6.14 [INFO] [stderr] Compiling indexmap v2.2.6 [INFO] [stderr] Compiling form_urlencoded v1.2.1 [INFO] [stderr] Compiling bio-types v1.0.2 [INFO] [stderr] Compiling idna v0.5.0 [INFO] [stderr] Compiling terminal_size v0.3.0 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling csv-core v0.1.11 [INFO] [stderr] Compiling strsim v0.11.1 [INFO] [stderr] Compiling ryu v1.0.18 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling smallvec v1.13.2 [INFO] [stderr] Compiling clap_lex v0.7.0 [INFO] [stderr] Compiling unicode-width v0.1.14 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling scopeguard v1.2.0 [INFO] [stderr] Compiling fixedbitset v0.4.2 [INFO] [stderr] Compiling bit-set v0.8.0 [INFO] [stderr] Compiling petgraph v0.6.5 [INFO] [stderr] Compiling console v0.15.8 [INFO] [stderr] Compiling clap_builder v4.5.2 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling multimap v0.10.0 [INFO] [stderr] Compiling url v2.5.2 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling clap_derive v4.5.4 [INFO] [stderr] Compiling ndarray v0.16.1 [INFO] [stderr] Compiling ordered-float v4.6.0 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling nalgebra v0.32.6 [INFO] [stderr] Compiling thread-id v3.3.0 [INFO] [stderr] Compiling crossbeam-queue v0.3.11 [INFO] [stderr] Compiling crossbeam-channel v0.5.13 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling number_prefix v0.4.0 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling bytecount v0.6.8 [INFO] [stderr] Compiling log v0.4.25 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling arrayvec v0.7.6 [INFO] [stderr] Compiling strum v0.26.3 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling clap v4.5.4 [INFO] [stderr] Compiling num-format v0.4.4 [INFO] [stderr] Compiling simple-logging v2.0.2 [INFO] [stderr] Compiling crossbeam v0.8.4 [INFO] [stderr] Compiling indicatif v0.17.8 [INFO] [stderr] Compiling parking_lot v0.12.2 [INFO] [stderr] Compiling colored v2.1.0 [INFO] [stderr] Compiling num_cpus v1.16.0 [INFO] [stderr] Compiling statrs v0.17.1 [INFO] [stderr] Compiling bio v2.0.3 [INFO] [stderr] Compiling tikv-jemallocator v0.5.4 [INFO] [stderr] Compiling rust-htslib v0.47.0 [INFO] [stderr] Compiling rumina v0.9.7 (/opt/rustwide/workdir) [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/grouper.rs:126:10 [INFO] [stdout] | [INFO] [stdout] 126 | &'c self, [INFO] [stdout] | ^^ these lifetimes flow to the output [INFO] [stdout] 127 | substring_map: IndexMap<(usize, usize), IndexMap<&'c str, Vec<&'c str>>>, [INFO] [stdout] | ^^ ^^ these lifetimes flow to the output [INFO] [stdout] | | [INFO] [stdout] | these lifetimes flow to the output [INFO] [stdout] 128 | ) -> impl Iterator)> { [INFO] [stdout] | ---- ---- the lifetimes get resolved as `'c` [INFO] [stdout] | | [INFO] [stdout] | the lifetimes get resolved as `'c` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: one option is to consistently use `'c` [INFO] [stdout] | [INFO] [stdout] 128 | ) -> impl Iterator)> { [INFO] [stdout] | ++ ++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/grouper.rs:217:10 [INFO] [stdout] | [INFO] [stdout] 217 | &'e self, [INFO] [stdout] | ^^ these lifetimes flow to the output [INFO] [stdout] 218 | adj_list: IndexMap<&'e str, Vec<&'e str>>, [INFO] [stdout] | ^^ ^^ these lifetimes flow to the output [INFO] [stdout] | | [INFO] [stdout] | these lifetimes flow to the output [INFO] [stdout] 219 | ) -> Option>> { [INFO] [stdout] | ---- the lifetime gets resolved as `'e` [INFO] [stdout] | [INFO] [stdout] help: one option is to consistently use `'e` [INFO] [stdout] | [INFO] [stdout] 219 | ) -> Option>> { [INFO] [stdout] | ++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/grouper.rs:241:9 [INFO] [stdout] | [INFO] [stdout] 241 | &self, [INFO] [stdout] | ^^^^^ this lifetime flows to the output [INFO] [stdout] 242 | counts: HashMap<&'b str, i32>, [INFO] [stdout] 243 | ) -> (HashMap<&str, i32>, GroupIterator) { [INFO] [stdout] | ---- ------------- the lifetimes get resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | the lifetimes get resolved as `'_` [INFO] [stdout] | [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 243 | ) -> (HashMap<&str, i32>, GroupIterator<'_>) { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/grouper.rs:260:9 [INFO] [stdout] | [INFO] [stdout] 260 | &self, [INFO] [stdout] | ^^^^^ this lifetime flows to the output [INFO] [stdout] ... [INFO] [stdout] 263 | ) -> (HashMap<&str, i32>, Option) { [INFO] [stdout] | ---- ------------- the lifetimes get resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | the lifetimes get resolved as `'_` [INFO] [stdout] | [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 263 | ) -> (HashMap<&str, i32>, Option>) { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 7m 48s [INFO] running `Command { std: "docker" "inspect" "4bea3efd206a7239fa867eef32b5343d1bfd60ee1cc9c075323694cb24827850", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4bea3efd206a7239fa867eef32b5343d1bfd60ee1cc9c075323694cb24827850", kill_on_drop: false }` [INFO] [stdout] 4bea3efd206a7239fa867eef32b5343d1bfd60ee1cc9c075323694cb24827850 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 27a06c315dfec30548cb77f4d8b4d0989f727ab25f6d8cfc91ee609356a06b84 [INFO] running `Command { std: "docker" "start" "-a" "27a06c315dfec30548cb77f4d8b4d0989f727ab25f6d8cfc91ee609356a06b84", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.153 [INFO] [stderr] Compiling libm v0.2.11 [INFO] [stderr] Compiling crossbeam-utils v0.8.19 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling bytemuck v1.21.0 [INFO] [stderr] Compiling ppv-lite86 v0.2.17 [INFO] [stderr] Compiling serde v1.0.217 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling either v1.12.0 [INFO] [stderr] Compiling tinyvec_macros v0.1.1 [INFO] [stderr] Compiling regex-syntax v0.8.4 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling tinyvec v1.8.0 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling getrandom v0.2.14 [INFO] [stderr] Compiling crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling wide v0.7.32 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling utf8parse v0.2.1 [INFO] [stderr] Compiling crossbeam-deque v0.8.5 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling linux-raw-sys v0.4.15 [INFO] [stderr] Compiling bitflags v2.5.0 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling rustix v0.38.34 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling anstyle-parse v0.2.4 [INFO] [stderr] Compiling thiserror v1.0.63 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling unicode-normalization v0.1.23 [INFO] [stderr] Compiling regex-automata v0.4.7 [INFO] [stderr] Compiling simba v0.8.1 [INFO] [stderr] Compiling openssl-sys v0.9.103 [INFO] [stderr] Compiling libz-sys v1.1.20 [INFO] [stderr] Compiling typenum v1.17.0 [INFO] [stderr] Compiling hashbrown v0.14.5 [INFO] [stderr] Compiling itoa v1.0.11 [INFO] [stderr] Compiling is_terminal_polyfill v1.70.0 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling anstyle v1.0.7 [INFO] [stderr] Compiling colorchoice v1.0.1 [INFO] [stderr] Compiling anstyle-query v1.0.3 [INFO] [stderr] Compiling unicode-bidi v0.3.15 [INFO] [stderr] Compiling equivalent v1.0.1 [INFO] [stderr] Compiling anstream v0.6.14 [INFO] [stderr] Compiling terminal_size v0.3.0 [INFO] [stderr] Compiling idna v0.5.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling csv-core v0.1.11 [INFO] [stderr] Compiling fixedbitset v0.4.2 [INFO] [stderr] Compiling clap_lex v0.7.0 [INFO] [stderr] Compiling curl-sys v0.4.74+curl-8.9.0 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling smallvec v1.13.2 [INFO] [stderr] Compiling ryu v1.0.18 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling strsim v0.11.1 [INFO] [stderr] Compiling bit-set v0.8.0 [INFO] [stderr] Compiling lock_api v0.4.12 [INFO] [stderr] Compiling parking_lot_core v0.9.10 [INFO] [stderr] Compiling indexmap v2.2.6 [INFO] [stderr] Compiling clap_builder v4.5.2 [INFO] [stderr] Compiling console v0.15.8 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling url v2.5.2 [INFO] [stderr] Compiling hts-sys v2.1.4 [INFO] [stderr] Compiling regex v1.10.6 [INFO] [stderr] Compiling petgraph v0.6.5 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling tikv-jemalloc-sys v0.5.4+5.3.0-patched [INFO] [stderr] Compiling bio-types v1.0.2 [INFO] [stderr] Compiling portable-atomic v1.9.0 [INFO] [stderr] Compiling anyhow v1.0.95 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling multimap v0.10.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling ndarray v0.16.1 [INFO] [stderr] Compiling ordered-float v4.6.0 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling thread-id v3.3.0 [INFO] [stderr] Compiling crossbeam-channel v0.5.13 [INFO] [stderr] Compiling crossbeam-queue v0.3.11 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling bytecount v0.6.8 [INFO] [stderr] Compiling log v0.4.25 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling number_prefix v0.4.0 [INFO] [stderr] Compiling strum v0.26.3 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling rust-htslib v0.47.0 [INFO] [stderr] Compiling clap v4.5.4 [INFO] [stderr] Compiling num-format v0.4.4 [INFO] [stderr] Compiling indicatif v0.17.8 [INFO] [stderr] Compiling simple-logging v2.0.2 [INFO] [stderr] Compiling crossbeam v0.8.4 [INFO] [stderr] Compiling tikv-jemallocator v0.5.4 [INFO] [stderr] Compiling parking_lot v0.12.2 [INFO] [stderr] Compiling nalgebra v0.32.6 [INFO] [stderr] Compiling num_cpus v1.16.0 [INFO] [stderr] Compiling colored v2.1.0 [INFO] [stderr] Compiling statrs v0.17.1 [INFO] [stderr] Compiling bio v2.0.3 [INFO] [stderr] Compiling rumina v0.9.7 (/opt/rustwide/workdir) [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/grouper.rs:126:10 [INFO] [stdout] | [INFO] [stdout] 126 | &'c self, [INFO] [stdout] | ^^ these lifetimes flow to the output [INFO] [stdout] 127 | substring_map: IndexMap<(usize, usize), IndexMap<&'c str, Vec<&'c str>>>, [INFO] [stdout] | ^^ ^^ these lifetimes flow to the output [INFO] [stdout] | | [INFO] [stdout] | these lifetimes flow to the output [INFO] [stdout] 128 | ) -> impl Iterator)> { [INFO] [stdout] | ---- ---- the lifetimes get resolved as `'c` [INFO] [stdout] | | [INFO] [stdout] | the lifetimes get resolved as `'c` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: one option is to consistently use `'c` [INFO] [stdout] | [INFO] [stdout] 128 | ) -> impl Iterator)> { [INFO] [stdout] | ++ ++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/grouper.rs:217:10 [INFO] [stdout] | [INFO] [stdout] 217 | &'e self, [INFO] [stdout] | ^^ these lifetimes flow to the output [INFO] [stdout] 218 | adj_list: IndexMap<&'e str, Vec<&'e str>>, [INFO] [stdout] | ^^ ^^ these lifetimes flow to the output [INFO] [stdout] | | [INFO] [stdout] | these lifetimes flow to the output [INFO] [stdout] 219 | ) -> Option>> { [INFO] [stdout] | ---- the lifetime gets resolved as `'e` [INFO] [stdout] | [INFO] [stdout] help: one option is to consistently use `'e` [INFO] [stdout] | [INFO] [stdout] 219 | ) -> Option>> { [INFO] [stdout] | ++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/grouper.rs:241:9 [INFO] [stdout] | [INFO] [stdout] 241 | &self, [INFO] [stdout] | ^^^^^ this lifetime flows to the output [INFO] [stdout] 242 | counts: HashMap<&'b str, i32>, [INFO] [stdout] 243 | ) -> (HashMap<&str, i32>, GroupIterator) { [INFO] [stdout] | ---- ------------- the lifetimes get resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | the lifetimes get resolved as `'_` [INFO] [stdout] | [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 243 | ) -> (HashMap<&str, i32>, GroupIterator<'_>) { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/grouper.rs:260:9 [INFO] [stdout] | [INFO] [stdout] 260 | &self, [INFO] [stdout] | ^^^^^ this lifetime flows to the output [INFO] [stdout] ... [INFO] [stdout] 263 | ) -> (HashMap<&str, i32>, Option) { [INFO] [stdout] | ---- ------------- the lifetimes get resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | the lifetimes get resolved as `'_` [INFO] [stdout] | [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 263 | ) -> (HashMap<&str, i32>, Option>) { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 1m 23s [INFO] running `Command { std: "docker" "inspect" "27a06c315dfec30548cb77f4d8b4d0989f727ab25f6d8cfc91ee609356a06b84", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "27a06c315dfec30548cb77f4d8b4d0989f727ab25f6d8cfc91ee609356a06b84", kill_on_drop: false }` [INFO] [stdout] 27a06c315dfec30548cb77f4d8b4d0989f727ab25f6d8cfc91ee609356a06b84 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 33479b2bf43cd5d358f402a89bb429de3dae4812de2a69dc7ec8cbc43b080115 [INFO] running `Command { std: "docker" "start" "-a" "33479b2bf43cd5d358f402a89bb429de3dae4812de2a69dc7ec8cbc43b080115", kill_on_drop: false }` [INFO] [stderr] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stderr] --> src/grouper.rs:126:10 [INFO] [stderr] | [INFO] [stderr] 126 | &'c self, [INFO] [stderr] | ^^ these lifetimes flow to the output [INFO] [stderr] 127 | substring_map: IndexMap<(usize, usize), IndexMap<&'c str, Vec<&'c str>>>, [INFO] [stderr] | ^^ ^^ these lifetimes flow to the output [INFO] [stderr] | | [INFO] [stderr] | these lifetimes flow to the output [INFO] [stderr] 128 | ) -> impl Iterator)> { [INFO] [stderr] | ---- ---- the lifetimes get resolved as `'c` [INFO] [stderr] | | [INFO] [stderr] | the lifetimes get resolved as `'c` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stderr] help: one option is to consistently use `'c` [INFO] [stderr] | [INFO] [stderr] 128 | ) -> impl Iterator)> { [INFO] [stderr] | ++ ++ [INFO] [stderr] [INFO] [stderr] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stderr] --> src/grouper.rs:217:10 [INFO] [stderr] | [INFO] [stderr] 217 | &'e self, [INFO] [stderr] | ^^ these lifetimes flow to the output [INFO] [stderr] 218 | adj_list: IndexMap<&'e str, Vec<&'e str>>, [INFO] [stderr] | ^^ ^^ these lifetimes flow to the output [INFO] [stderr] | | [INFO] [stderr] | these lifetimes flow to the output [INFO] [stderr] 219 | ) -> Option>> { [INFO] [stderr] | ---- the lifetime gets resolved as `'e` [INFO] [stderr] | [INFO] [stderr] help: one option is to consistently use `'e` [INFO] [stderr] | [INFO] [stderr] 219 | ) -> Option>> { [INFO] [stderr] | ++ [INFO] [stderr] [INFO] [stderr] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stderr] --> src/grouper.rs:241:9 [INFO] [stderr] | [INFO] [stderr] 241 | &self, [INFO] [stderr] | ^^^^^ this lifetime flows to the output [INFO] [stderr] 242 | counts: HashMap<&'b str, i32>, [INFO] [stderr] 243 | ) -> (HashMap<&str, i32>, GroupIterator) { [INFO] [stderr] | ---- ------------- the lifetimes get resolved as `'_` [INFO] [stderr] | | [INFO] [stderr] | the lifetimes get resolved as `'_` [INFO] [stderr] | [INFO] [stderr] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stderr] | [INFO] [stderr] 243 | ) -> (HashMap<&str, i32>, GroupIterator<'_>) { [INFO] [stderr] | ++++ [INFO] [stderr] [INFO] [stderr] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stderr] --> src/grouper.rs:260:9 [INFO] [stderr] | [INFO] [stderr] 260 | &self, [INFO] [stderr] | ^^^^^ this lifetime flows to the output [INFO] [stderr] ... [INFO] [stderr] 263 | ) -> (HashMap<&str, i32>, Option) { [INFO] [stderr] | ---- ------------- the lifetimes get resolved as `'_` [INFO] [stderr] | | [INFO] [stderr] | the lifetimes get resolved as `'_` [INFO] [stderr] | [INFO] [stderr] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stderr] | [INFO] [stderr] 263 | ) -> (HashMap<&str, i32>, Option>) { [INFO] [stderr] | ++++ [INFO] [stderr] [INFO] [stderr] warning: `rumina` (bin "rumina" test) generated 4 warnings (run `cargo fix --bin "rumina" --tests` to apply 4 suggestions) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.40s [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/rumina-808db9e9f333df64) [INFO] [stdout] [INFO] [stdout] running 17 tests [INFO] [stdout] test grouper::tests::test_edit_distance ... ok [INFO] [stdout] test grouper::tests::test_add_edge_directional ... ok [INFO] [stdout] test grouper::tests::test_cluster_directional ... ok [INFO] [stdout] test merge::tests::test_construct_sequence ... ok [INFO] [stdout] test grouper::tests::test_get_adj_list_directional ... ok [INFO] [stdout] test grouper::tests::test_get_substring_map ... ok [INFO] [stdout] test merge::tests::test_is_opp_orientation ... ok [INFO] [stdout] test grouper::tests::test_get_umi_groups ... ok [INFO] [stdout] test merge::tests::test_is_overlap ... ok [INFO] [stdout] test read_picker::tests::test_correct_errors_multiple_reads ... ok [INFO] [stdout] test read_picker::tests::test_correct_errors_single_read ... ok [INFO] [stdout] test read_picker::tests::test_get_best_phred_multiple_groups ... ok [INFO] [stdout] test grouper::tests::test_no_clustering ... ok [INFO] [stdout] test read_picker::tests::test_correction_tied_for_majority ... ok [INFO] [stdout] test read_picker::tests::test_get_best_phred_single_group ... ok [INFO] [stdout] test merge::tests::test_handle_dupes ... ok [INFO] [stdout] test read_picker::tests::test_get_counts ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 17 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "33479b2bf43cd5d358f402a89bb429de3dae4812de2a69dc7ec8cbc43b080115", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "33479b2bf43cd5d358f402a89bb429de3dae4812de2a69dc7ec8cbc43b080115", kill_on_drop: false }` [INFO] [stdout] 33479b2bf43cd5d358f402a89bb429de3dae4812de2a69dc7ec8cbc43b080115