[INFO] fetching crate pyanndata 0.5.1... [INFO] testing pyanndata-0.5.1 against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_with_libc_patch_0 [INFO] extracting crate pyanndata 0.5.1 into /workspace/builds/worker-2-tc1/source [INFO] started tweaking crates.io crate pyanndata 0.5.1 [INFO] finished tweaking crates.io crate pyanndata 0.5.1 [INFO] tweaked toml for crates.io crate pyanndata 0.5.1 written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate pyanndata 0.5.1 on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 359 packages to latest compatible versions [INFO] [stderr] Adding downcast-rs v1.2.1 (available: v2.0.1) [INFO] [stderr] Adding hdf5-metno v0.9.2 (available: v0.9.4) [INFO] [stderr] Adding numpy v0.22.1 (available: v0.25.0) [INFO] [stderr] Adding polars v0.45.1 (available: v0.49.1) [INFO] [stderr] Adding pyo3 v0.22.6 (available: v0.25.1) [INFO] [stderr] Adding pyo3-polars v0.19.0 (available: v0.22.0) [INFO] [stderr] Adding rand v0.8.5 (available: v0.9.1) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded unindent v0.2.4 [INFO] [stderr] Downloaded pyo3-macros v0.22.6 [INFO] [stderr] Downloaded pyo3-polars v0.19.0 [INFO] [stderr] Downloaded pyo3-build-config v0.22.6 [INFO] [stderr] Downloaded polars-utils v0.45.1 [INFO] [stderr] Downloaded pyo3-ffi v0.22.6 [INFO] [stderr] Downloaded generator v0.8.5 [INFO] [stderr] Downloaded unsafe_cell_slice v0.2.2 [INFO] [stderr] Downloaded anndata-hdf5 v0.5.0 [INFO] [stderr] Downloaded zarrs_metadata v0.2.0 [INFO] [stderr] Downloaded blosc-src v0.3.6 [INFO] [stderr] Downloaded polars-parquet-format v0.1.0 [INFO] [stderr] Downloaded anndata v0.6.1 [INFO] [stderr] Downloaded polars-stream v0.45.1 [INFO] [stderr] Downloaded snappy_src v0.2.5+snappy.1.2.2 [INFO] [stderr] Downloaded polars-parquet v0.45.1 [INFO] [stderr] Downloaded polars-arrow v0.45.1 [INFO] [stderr] Downloaded numpy v0.22.1 [INFO] [stderr] Downloaded hdf5-metno v0.9.2 [INFO] [stderr] Downloaded polars-expr v0.45.1 [INFO] [stderr] Downloaded polars-lazy v0.45.1 [INFO] [stderr] Downloaded simd-json v0.14.3 [INFO] [stderr] Downloaded polars-io v0.45.1 [INFO] [stderr] Downloaded sqlparser v0.52.0 [INFO] [stderr] Downloaded polars-sql v0.45.1 [INFO] [stderr] Downloaded argminmax v0.6.3 [INFO] [stderr] Downloaded polars-ops v0.45.1 [INFO] [stderr] Downloaded zarrs v0.18.3 [INFO] [stderr] Downloaded nalgebra-sparse v0.10.0 [INFO] [stderr] Downloaded polars-pipe v0.45.1 [INFO] [stderr] Downloaded libz-ng-sys v1.1.22 [INFO] [stderr] Downloaded polars-plan v0.45.1 [INFO] [stderr] Downloaded polars v0.45.1 [INFO] [stderr] Downloaded polars-row v0.45.1 [INFO] [stderr] Downloaded hdf5-metno-sys v0.9.1 [INFO] [stderr] Downloaded hdf5-metno-types v0.9.0 [INFO] [stderr] Downloaded value-trait v0.10.1 [INFO] [stderr] Downloaded polars-json v0.45.1 [INFO] [stderr] Downloaded debug_unsafe v0.1.3 [INFO] [stderr] Downloaded atoi_simd v0.16.1 [INFO] [stderr] Downloaded polars-compute v0.45.1 [INFO] [stderr] Downloaded polars-error v0.45.1 [INFO] [stderr] Downloaded permutation v0.4.1 [INFO] [stderr] Downloaded crc32c v0.6.8 [INFO] [stderr] Downloaded rayon_iter_concurrent_limit v0.2.0 [INFO] [stderr] Downloaded zarrs_filesystem v0.2.3 [INFO] [stderr] Downloaded zarrs_storage v0.3.4 [INFO] [stderr] Downloaded anndata-zarr v0.1.0 [INFO] [stderr] Downloaded polars-time v0.45.1 [INFO] [stderr] Downloaded polars-schema v0.45.1 [INFO] [stderr] Downloaded hdf5-metno-derive v0.9.2 [INFO] [stderr] Downloaded polars-mem-engine v0.45.1 [INFO] [stderr] Downloaded fast-float2 v0.2.3 [INFO] [stderr] Downloaded polars-core v0.45.1 [INFO] [stderr] Downloaded pyo3 v0.22.6 [INFO] [stderr] Downloaded pyo3-macros-backend v0.22.6 [INFO] [stderr] Downloaded hdf5-metno-src v0.9.4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 81352c6c6b0a70689a5e2fdcdc552d07ac0131925f43bfc43899d7f4cbb62bf4 [INFO] running `Command { std: "docker" "start" "-a" "81352c6c6b0a70689a5e2fdcdc552d07ac0131925f43bfc43899d7f4cbb62bf4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "81352c6c6b0a70689a5e2fdcdc552d07ac0131925f43bfc43899d7f4cbb62bf4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "81352c6c6b0a70689a5e2fdcdc552d07ac0131925f43bfc43899d7f4cbb62bf4", kill_on_drop: false }` [INFO] [stdout] 81352c6c6b0a70689a5e2fdcdc552d07ac0131925f43bfc43899d7f4cbb62bf4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 1ce84d32a18e10e1ebfd899dcd577095437de671e0522bab967780a1506a5d03 [INFO] running `Command { std: "docker" "start" "-a" "1ce84d32a18e10e1ebfd899dcd577095437de671e0522bab967780a1506a5d03", kill_on_drop: false }` [INFO] [stderr] Compiling syn v2.0.104 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Compiling jobserver v0.1.33 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Compiling pkg-config v0.3.32 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling smallvec v1.15.1 [INFO] [stderr] Compiling foldhash v0.1.5 [INFO] [stderr] Compiling cc v1.2.27 [INFO] [stderr] Compiling parking_lot_core v0.9.11 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling siphasher v1.0.1 [INFO] [stderr] Compiling parking_lot v0.12.4 [INFO] [stderr] Compiling bitflags v2.9.1 [INFO] [stderr] Compiling phf_shared v0.11.3 [INFO] [stderr] Compiling crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling target-features v0.1.6 [INFO] [stderr] Compiling array-init-cursor v0.2.1 [INFO] [stderr] Compiling planus v0.3.1 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling parse-zoneinfo v0.3.1 [INFO] [stderr] Compiling crossbeam-deque v0.8.6 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling phf_generator v0.11.3 [INFO] [stderr] Compiling castaway v0.2.3 [INFO] [stderr] Compiling cmake v0.1.54 [INFO] [stderr] Compiling phf_codegen v0.11.3 [INFO] [stderr] Compiling chrono-tz-build v0.4.1 [INFO] [stderr] Compiling polars-utils v0.45.1 [INFO] [stderr] Compiling iana-time-zone v0.1.63 [INFO] [stderr] Compiling simdutf8 v0.1.5 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling chrono v0.4.41 [INFO] [stderr] Compiling chrono-tz v0.10.3 [INFO] [stderr] Compiling raw-cpuid v11.5.0 [INFO] [stderr] Compiling polars-schema v0.45.1 [INFO] [stderr] Compiling memmap2 v0.9.5 [INFO] [stderr] Compiling phf v0.11.3 [INFO] [stderr] Compiling polars-arrow v0.45.1 [INFO] [stderr] Compiling psm v0.1.26 [INFO] [stderr] Compiling stacker v0.1.21 [INFO] [stderr] Compiling zstd-sys v2.0.15+zstd.1.5.7 [INFO] [stderr] Compiling atoi v2.0.0 [INFO] [stderr] Compiling polars-compute v0.45.1 [INFO] [stderr] Compiling ethnum v1.5.2 [INFO] [stderr] Compiling target-lexicon v0.12.16 [INFO] [stderr] Compiling itoap v1.0.1 [INFO] [stderr] Compiling rustix v0.38.44 [INFO] [stderr] Compiling debug_unsafe v0.1.3 [INFO] [stderr] Compiling streaming-iterator v0.1.9 [INFO] [stderr] Compiling strength_reduce v0.2.4 [INFO] [stderr] Compiling vcpkg v0.2.15 [INFO] [stderr] Compiling atoi_simd v0.16.1 [INFO] [stderr] Compiling fast-float2 v0.2.3 [INFO] [stderr] Compiling linux-raw-sys v0.4.15 [INFO] [stderr] Compiling libz-ng-sys v1.1.22 [INFO] [stderr] Compiling polars-core v0.45.1 [INFO] [stderr] Compiling zstd-safe v7.2.4 [INFO] [stderr] Compiling pyo3-build-config v0.22.6 [INFO] [stderr] Compiling unicode-segmentation v1.12.0 [INFO] [stderr] Compiling unicode-width v0.2.1 [INFO] [stderr] Compiling crossterm v0.28.1 [INFO] [stderr] Compiling libz-sys v1.1.22 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling comfy-table v7.1.4 [INFO] [stderr] Compiling polars-ops v0.45.1 [INFO] [stderr] Compiling xxhash-rust v0.8.15 [INFO] [stderr] Compiling miniz_oxide v0.8.9 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling bytemuck_derive v1.9.3 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling bytemuck v1.23.1 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling argminmax v0.6.3 [INFO] [stderr] Compiling crc32fast v1.4.2 [INFO] [stderr] Compiling multiversion-macros v0.7.4 [INFO] [stderr] Compiling thiserror v2.0.12 [INFO] [stderr] Compiling now v0.1.3 [INFO] [stderr] Compiling recursive-proc-macro-impl v0.1.1 [INFO] [stderr] Compiling polars-plan v0.45.1 [INFO] [stderr] Compiling percent-encoding v2.3.1 [INFO] [stderr] Compiling glob v0.3.2 [INFO] [stderr] Compiling home v0.5.11 [INFO] [stderr] Compiling recursive v0.1.1 [INFO] [stderr] Compiling hdf5-metno-src v0.9.4 [INFO] [stderr] Compiling link-cplusplus v1.0.10 [INFO] [stderr] Compiling num-bigint v0.4.6 [INFO] [stderr] Compiling libloading v0.8.8 [INFO] [stderr] warning: link-cplusplus@1.0.10: Compiler family detection failed due to error: ToolNotFound: failed to find tool "x86_64-linux-musl-g++": No such file or directory (os error 2) [INFO] [stderr] error: failed to run custom build command for `link-cplusplus v1.0.10` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/link-cplusplus-aaebb2f31307b3e0/build-script-build` (exit status: 1) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rerun-if-changed=build.rs [INFO] [stderr] OUT_DIR = Some(/opt/rustwide/target/x86_64-unknown-linux-musl/debug/build/link-cplusplus-d8067ee179392e59/out) [INFO] [stderr] OPT_LEVEL = Some(0) [INFO] [stderr] TARGET = Some(x86_64-unknown-linux-musl) [INFO] [stderr] HOST = Some(x86_64-unknown-linux-gnu) [INFO] [stderr] cargo:rerun-if-env-changed=CXX_x86_64-unknown-linux-musl [INFO] [stderr] CXX_x86_64-unknown-linux-musl = None [INFO] [stderr] cargo:rerun-if-env-changed=CXX_x86_64_unknown_linux_musl [INFO] [stderr] CXX_x86_64_unknown_linux_musl = None [INFO] [stderr] cargo:rerun-if-env-changed=TARGET_CXX [INFO] [stderr] TARGET_CXX = None [INFO] [stderr] cargo:rerun-if-env-changed=CXX [INFO] [stderr] CXX = None [INFO] [stderr] cargo:rerun-if-env-changed=CROSS_COMPILE [INFO] [stderr] CROSS_COMPILE = None [INFO] [stderr] RUSTC_LINKER = None [INFO] [stderr] PATH = Some(/opt/rustwide/cargo-home/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin) [INFO] [stderr] cargo:rerun-if-env-changed=CC_ENABLE_DEBUG_OUTPUT [INFO] [stderr] cargo:warning=Compiler family detection failed due to error: ToolNotFound: failed to find tool "x86_64-linux-musl-g++": No such file or directory (os error 2) [INFO] [stderr] RUSTC_WRAPPER = None [INFO] [stderr] cargo:rerun-if-env-changed=CRATE_CC_NO_DEFAULTS [INFO] [stderr] CRATE_CC_NO_DEFAULTS = None [INFO] [stderr] DEBUG = Some(true) [INFO] [stderr] CARGO_CFG_TARGET_FEATURE = Some(fxsr,sse,sse2,x87) [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS [INFO] [stderr] CXXFLAGS = None [INFO] [stderr] cargo:rerun-if-env-changed=TARGET_CXXFLAGS [INFO] [stderr] TARGET_CXXFLAGS = None [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS_x86_64_unknown_linux_musl [INFO] [stderr] CXXFLAGS_x86_64_unknown_linux_musl = None [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS_x86_64-unknown-linux-musl [INFO] [stderr] CXXFLAGS_x86_64-unknown-linux-musl = None [INFO] [stderr] CARGO_ENCODED_RUSTFLAGS = Some(--cap-lints=forbid) [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] error occurred in cc-rs: failed to find tool "x86_64-linux-musl-g++": No such file or directory (os error 2) [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "1ce84d32a18e10e1ebfd899dcd577095437de671e0522bab967780a1506a5d03", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1ce84d32a18e10e1ebfd899dcd577095437de671e0522bab967780a1506a5d03", kill_on_drop: false }` [INFO] [stdout] 1ce84d32a18e10e1ebfd899dcd577095437de671e0522bab967780a1506a5d03