[INFO] fetching crate pombase-gocam 0.77.0... [INFO] testing pombase-gocam-0.77.0 against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_with_libc_patch_0 [INFO] extracting crate pombase-gocam 0.77.0 into /workspace/builds/worker-7-tc1/source [INFO] started tweaking crates.io crate pombase-gocam 0.77.0 [INFO] finished tweaking crates.io crate pombase-gocam 0.77.0 [INFO] tweaked toml for crates.io crate pombase-gocam 0.77.0 written to /workspace/builds/worker-7-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate pombase-gocam 0.77.0 on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate pombase-gocam 0.77.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded petgraph v0.8.2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] bcb0e2e6c1dfd84f872633034dcc4c22448d0c07b774dba353b7b3c8d2d38a18 [INFO] running `Command { std: "docker" "start" "-a" "bcb0e2e6c1dfd84f872633034dcc4c22448d0c07b774dba353b7b3c8d2d38a18", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "bcb0e2e6c1dfd84f872633034dcc4c22448d0c07b774dba353b7b3c8d2d38a18", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bcb0e2e6c1dfd84f872633034dcc4c22448d0c07b774dba353b7b3c8d2d38a18", kill_on_drop: false }` [INFO] [stdout] bcb0e2e6c1dfd84f872633034dcc4c22448d0c07b774dba353b7b3c8d2d38a18 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] e29a74964ece2f1d7e7b5bdddabad9555f72c0a901c29361b6c06ef9b8e8e28e [INFO] running `Command { std: "docker" "start" "-a" "e29a74964ece2f1d7e7b5bdddabad9555f72c0a901c29361b6c06ef9b8e8e28e", kill_on_drop: false }` [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling allocator-api2 v0.2.21 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling foldhash v0.1.5 [INFO] [stderr] Compiling equivalent v1.0.2 [INFO] [stderr] Compiling siphasher v1.0.1 [INFO] [stderr] Compiling anyhow v1.0.98 [INFO] [stderr] Compiling syn v2.0.103 [INFO] [stderr] Compiling serde_json v1.0.140 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling itoa v1.0.15 [INFO] [stderr] Compiling phf_shared v0.11.3 [INFO] [stderr] Compiling ryu v1.0.20 [INFO] [stderr] Compiling unsafe-libyaml v0.2.11 [INFO] [stderr] Compiling fixedbitset v0.5.7 [INFO] [stderr] Compiling memchr v2.7.5 [INFO] [stderr] Compiling hashbrown v0.15.4 [INFO] [stderr] Compiling phf_generator v0.11.3 [INFO] [stderr] Compiling indexmap v2.9.0 [INFO] [stderr] Compiling serde_yaml v0.9.34+deprecated [INFO] [stderr] Compiling phf_macros v0.11.3 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling phf v0.11.3 [INFO] [stderr] Compiling petgraph v0.8.2 [INFO] [stderr] Compiling pombase-gocam v0.77.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/lib.rs:230:26 [INFO] [stdout] | [INFO] [stdout] 230 | pub fn node_iterator(&self) -> NodeIterator { [INFO] [stdout] | ^^^^^ ------------ the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 230 | pub fn node_iterator(&self) -> NodeIterator<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 36.31s [INFO] running `Command { std: "docker" "inspect" "e29a74964ece2f1d7e7b5bdddabad9555f72c0a901c29361b6c06ef9b8e8e28e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e29a74964ece2f1d7e7b5bdddabad9555f72c0a901c29361b6c06ef9b8e8e28e", kill_on_drop: false }` [INFO] [stdout] e29a74964ece2f1d7e7b5bdddabad9555f72c0a901c29361b6c06ef9b8e8e28e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 2c172606abf9d6da31250c7c73d311332be34c0ec60f9111765ed816a16b59f3 [INFO] running `Command { std: "docker" "start" "-a" "2c172606abf9d6da31250c7c73d311332be34c0ec60f9111765ed816a16b59f3", kill_on_drop: false }` [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/lib.rs:230:26 [INFO] [stdout] | [INFO] [stdout] 230 | pub fn node_iterator(&self) -> NodeIterator { [INFO] [stdout] | ^^^^^ ------------ the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 230 | pub fn node_iterator(&self) -> NodeIterator<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling pombase-gocam v0.77.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/lib.rs:230:26 [INFO] [stdout] | [INFO] [stdout] 230 | pub fn node_iterator(&self) -> NodeIterator { [INFO] [stdout] | ^^^^^ ------------ the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 230 | pub fn node_iterator(&self) -> NodeIterator<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 6.97s [INFO] running `Command { std: "docker" "inspect" "2c172606abf9d6da31250c7c73d311332be34c0ec60f9111765ed816a16b59f3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2c172606abf9d6da31250c7c73d311332be34c0ec60f9111765ed816a16b59f3", kill_on_drop: false }` [INFO] [stdout] 2c172606abf9d6da31250c7c73d311332be34c0ec60f9111765ed816a16b59f3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 74b18ba41bc9eb91d26ad70e0df5ba8a31a79468c4a2ccbf1e814248216fa3c7 [INFO] running `Command { std: "docker" "start" "-a" "74b18ba41bc9eb91d26ad70e0df5ba8a31a79468c4a2ccbf1e814248216fa3c7", kill_on_drop: false }` [INFO] [stderr] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stderr] --> src/lib.rs:230:26 [INFO] [stderr] | [INFO] [stderr] 230 | pub fn node_iterator(&self) -> NodeIterator { [INFO] [stderr] | ^^^^^ ------------ the lifetime gets resolved as `'_` [INFO] [stderr] | | [INFO] [stderr] | this lifetime flows to the output [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stderr] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stderr] | [INFO] [stderr] 230 | pub fn node_iterator(&self) -> NodeIterator<'_> { [INFO] [stderr] | ++++ [INFO] [stderr] [INFO] [stderr] warning: `pombase-gocam` (lib) generated 1 warning (run `cargo fix --lib -p pombase-gocam` to apply 1 suggestion) [INFO] [stderr] warning: `pombase-gocam` (lib test) generated 1 warning (1 duplicate) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.09s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/pombase_gocam-ac2eb36c0ffef04b) [INFO] [stdout] [INFO] [stdout] running 15 tests [INFO] [stdout] test graph::tests::parse_raw_test ... ok [INFO] [stdout] test raw::tests::parse_raw_test ... ok [INFO] [stdout] test tests::parse_test ... ok [INFO] [stdout] test gocam_py::tests::parse_test ... ok [INFO] [stdout] test tests::test_genes_enabling_activities ... ok [INFO] [stdout] test tests::test_genes_in_model ... ok [INFO] [stdout] test tests::remove_chemicals_test ... ok [INFO] [stdout] test tests::test_modified_genes_in_model ... ok [INFO] [stdout] test tests::test_node_rel_direction ... ok [INFO] [stdout] test tests::overlap_test ... ok [INFO] [stdout] test tests::merge_test ... ok [INFO] [stdout] test tests::find_overlaps_test ... ok [INFO] [stdout] test tests::merge_test_three_models ... ok [INFO] [stdout] test tests::merge_test_mss51 ... ok [INFO] [stdout] test tests::merge_test_mss51_remove_chemicals ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.68s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "74b18ba41bc9eb91d26ad70e0df5ba8a31a79468c4a2ccbf1e814248216fa3c7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "74b18ba41bc9eb91d26ad70e0df5ba8a31a79468c4a2ccbf1e814248216fa3c7", kill_on_drop: false }` [INFO] [stdout] 74b18ba41bc9eb91d26ad70e0df5ba8a31a79468c4a2ccbf1e814248216fa3c7