[INFO] fetching crate phylofold 0.1.2... [INFO] testing phylofold-0.1.2 against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_with_libc_patch_0 [INFO] extracting crate phylofold 0.1.2 into /workspace/builds/worker-6-tc1/source [INFO] started tweaking crates.io crate phylofold 0.1.2 [INFO] finished tweaking crates.io crate phylofold 0.1.2 [INFO] tweaked toml for crates.io crate phylofold 0.1.2 written to /workspace/builds/worker-6-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate phylofold 0.1.2 on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate phylofold 0.1.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded bio-seq-algos v0.1.15 [INFO] [stderr] Downloaded rawpointer v0.1.0 [INFO] [stderr] Downloaded matrixmultiply v0.1.15 [INFO] [stderr] Downloaded bv v0.7.4 [INFO] [stderr] Downloaded bit-set v0.4.0 [INFO] [stderr] Downloaded rna-algos v0.1.14 [INFO] [stderr] Downloaded rna-ss-params v0.1.16 [INFO] [stderr] Downloaded bytecount v0.3.2 [INFO] [stderr] Downloaded ucd-util v0.1.7 [INFO] [stderr] Downloaded itertools v0.6.5 [INFO] [stderr] Downloaded ndarray v0.9.1 [INFO] [stderr] Downloaded phyloprob v0.1.2 [INFO] [stderr] Downloaded bio v0.20.3 [INFO] [stderr] Downloaded bstr v0.2.11 [INFO] [stderr] Downloaded csv v1.1.3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] aa36598050c07853d005a110094d5b81ed2decfab8dc38ccfc1af6fb9b95aa45 [INFO] running `Command { std: "docker" "start" "-a" "aa36598050c07853d005a110094d5b81ed2decfab8dc38ccfc1af6fb9b95aa45", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "aa36598050c07853d005a110094d5b81ed2decfab8dc38ccfc1af6fb9b95aa45", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "aa36598050c07853d005a110094d5b81ed2decfab8dc38ccfc1af6fb9b95aa45", kill_on_drop: false }` [INFO] [stdout] aa36598050c07853d005a110094d5b81ed2decfab8dc38ccfc1af6fb9b95aa45 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] e62b79586fc03757875f4f476857829d5780b7085f2ecc6f214567af0e70cda8 [INFO] running `Command { std: "docker" "start" "-a" "e62b79586fc03757875f4f476857829d5780b7085f2ecc6f214567af0e70cda8", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] [stderr] Compiling proc-macro2 v1.0.9 [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Compiling syn v1.0.16 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling serde v1.0.104 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Compiling libc v0.2.67 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling either v1.5.3 [INFO] [stderr] Compiling ryu v1.0.2 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling num-traits v0.2.11 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling bv v0.7.4 [INFO] [stderr] Compiling ndarray v0.9.1 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling regex-automata v0.1.9 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling ucd-util v0.1.7 [INFO] [stderr] Compiling quote v1.0.3 [INFO] [stderr] Compiling void v1.0.2 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling unreachable v1.0.0 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Compiling time v0.1.42 [INFO] [stderr] Compiling itertools v0.6.5 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling bit-vec v0.4.4 [INFO] [stderr] Compiling lazy_static v0.1.16 [INFO] [stderr] Compiling itoa v0.4.5 [INFO] [stderr] Compiling utf8-ranges v1.0.4 [INFO] [stderr] Compiling bit-set v0.4.0 [INFO] [stderr] Compiling num-traits v0.1.43 [INFO] [stderr] Compiling num-complex v0.1.43 [INFO] [stderr] Compiling ordered-float v0.5.2 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling bio-seq-algos v0.1.15 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling lazy_static v0.2.11 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling unicode-width v0.1.7 [INFO] [stderr] Compiling approx v0.1.1 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling getopts v0.2.21 [INFO] [stderr] Compiling rna-ss-params v0.1.16 [INFO] [stderr] Compiling num_cpus v1.12.0 [INFO] [stderr] Compiling itertools v0.8.2 [INFO] [stderr] Compiling scoped_threadpool v0.1.9 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling serde_derive v1.0.104 [INFO] [stderr] Compiling bstr v0.2.11 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling csv v1.1.3 [INFO] [stderr] Compiling bio v0.20.3 [INFO] [stderr] Compiling rna-algos v0.1.14 [INFO] [stderr] Compiling phyloprob v0.1.2 [INFO] [stderr] Compiling phylofold v0.1.2 (/opt/rustwide/workdir) [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/main.rs:33:72 [INFO] [stdout] | [INFO] [stdout] 33 | Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] help: add a "{}" format string to `Display` the message [INFO] [stdout] | [INFO] [stdout] 33 | Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())} [INFO] [stdout] | +++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 31.92s [INFO] running `Command { std: "docker" "inspect" "e62b79586fc03757875f4f476857829d5780b7085f2ecc6f214567af0e70cda8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e62b79586fc03757875f4f476857829d5780b7085f2ecc6f214567af0e70cda8", kill_on_drop: false }` [INFO] [stdout] e62b79586fc03757875f4f476857829d5780b7085f2ecc6f214567af0e70cda8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 199f396fce48d755cf444cdb382814fdd03e53a5870ab6c10c57d15574eb913d [INFO] running `Command { std: "docker" "start" "-a" "199f396fce48d755cf444cdb382814fdd03e53a5870ab6c10c57d15574eb913d", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] [stderr] Compiling phylofold v0.1.2 (/opt/rustwide/workdir) [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/main.rs:33:72 [INFO] [stdout] | [INFO] [stdout] 33 | Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] help: add a "{}" format string to `Display` the message [INFO] [stdout] | [INFO] [stdout] 33 | Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())} [INFO] [stdout] | +++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.85s [INFO] running `Command { std: "docker" "inspect" "199f396fce48d755cf444cdb382814fdd03e53a5870ab6c10c57d15574eb913d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "199f396fce48d755cf444cdb382814fdd03e53a5870ab6c10c57d15574eb913d", kill_on_drop: false }` [INFO] [stdout] 199f396fce48d755cf444cdb382814fdd03e53a5870ab6c10c57d15574eb913d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 5cb76394de9dc1d989f516e543d7d1ba5c603a14036e3d9a0de0bcd2314f52d7 [INFO] running `Command { std: "docker" "start" "-a" "5cb76394de9dc1d989f516e543d7d1ba5c603a14036e3d9a0de0bcd2314f52d7", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] [stderr] warning: panic message is not a string literal [INFO] [stderr] --> src/main.rs:33:72 [INFO] [stderr] | [INFO] [stderr] 33 | Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())} [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021 [INFO] [stderr] = note: for more information, see [INFO] [stderr] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stderr] help: add a "{}" format string to `Display` the message [INFO] [stderr] | [INFO] [stderr] 33 | Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())} [INFO] [stderr] | +++++ [INFO] [stderr] [INFO] [stderr] warning: `phylofold` (bin "phylofold" test) generated 1 warning (run `cargo fix --bin "phylofold" --tests` to apply 1 suggestion) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.11s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/phylofold-0e492861379b882d) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/phylofold-35bfcf52fd878167) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "5cb76394de9dc1d989f516e543d7d1ba5c603a14036e3d9a0de0bcd2314f52d7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5cb76394de9dc1d989f516e543d7d1ba5c603a14036e3d9a0de0bcd2314f52d7", kill_on_drop: false }` [INFO] [stdout] 5cb76394de9dc1d989f516e543d7d1ba5c603a14036e3d9a0de0bcd2314f52d7