[INFO] fetching crate pairsnp-rs 0.2.1...
[INFO] testing pairsnp-rs-0.2.1 against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_with_libc_patch_0
[INFO] extracting crate pairsnp-rs 0.2.1 into /workspace/builds/worker-4-tc1/source
[INFO] started tweaking crates.io crate pairsnp-rs 0.2.1
[INFO] finished tweaking crates.io crate pairsnp-rs 0.2.1
[INFO] tweaked toml for crates.io crate pairsnp-rs 0.2.1 written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate pairsnp-rs 0.2.1 on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate pairsnp-rs 0.2.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded liblzma v0.3.6
[INFO] [stderr]   Downloaded needletail v0.6.3
[INFO] [stderr]   Downloaded liblzma-sys v0.3.13
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] aa79dbd948a9319299facfca18a0a653be50803ab0795eb9c9a909c3442d2956
[INFO] running `Command { std: "docker" "start" "-a" "aa79dbd948a9319299facfca18a0a653be50803ab0795eb9c9a909c3442d2956", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "aa79dbd948a9319299facfca18a0a653be50803ab0795eb9c9a909c3442d2956", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "aa79dbd948a9319299facfca18a0a653be50803ab0795eb9c9a909c3442d2956", kill_on_drop: false }`
[INFO] [stdout] aa79dbd948a9319299facfca18a0a653be50803ab0795eb9c9a909c3442d2956
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] 114a4475041eef4ce956ae514233724491436dd4d4f1e3100093b68cc522451a
[INFO] running `Command { std: "docker" "start" "-a" "114a4475041eef4ce956ae514233724491436dd4d4f1e3100093b68cc522451a", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.172
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]    Compiling utf8parse v0.2.2
[INFO] [stderr]    Compiling adler2 v2.0.0
[INFO] [stderr]    Compiling colorchoice v1.0.3
[INFO] [stderr]    Compiling is_terminal_polyfill v1.70.1
[INFO] [stderr]    Compiling anstyle-query v1.1.2
[INFO] [stderr]    Compiling anstyle v1.0.10
[INFO] [stderr]    Compiling memchr v2.7.4
[INFO] [stderr]    Compiling crc32fast v1.4.2
[INFO] [stderr]    Compiling strsim v0.11.1
[INFO] [stderr]    Compiling clap_lex v0.7.4
[INFO] [stderr]    Compiling bytemuck v1.23.0
[INFO] [stderr]    Compiling syn v2.0.101
[INFO] [stderr]    Compiling bytecount v0.6.8
[INFO] [stderr]    Compiling anstyle-parse v0.2.6
[INFO] [stderr]    Compiling miniz_oxide v0.8.8
[INFO] [stderr]    Compiling roaring v0.10.12
[INFO] [stderr]    Compiling anstream v0.6.18
[INFO] [stderr]    Compiling clap_builder v4.5.37
[INFO] [stderr]    Compiling buffer-redux v1.0.2
[INFO] [stderr]    Compiling flate2 v1.1.1
[INFO] [stderr]    Compiling jobserver v0.1.33
[INFO] [stderr]    Compiling cc v1.2.22
[INFO] [stderr]    Compiling zstd-sys v2.0.15+zstd.1.5.7
[INFO] [stderr]    Compiling liblzma-sys v0.3.13
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling bzip2 v0.4.4
[INFO] [stderr]    Compiling clap_derive v4.5.32
[INFO] [stderr]    Compiling liblzma v0.3.6
[INFO] [stderr]    Compiling clap v4.5.37
[INFO] [stderr]    Compiling zstd v0.13.3
[INFO] [stderr]    Compiling needletail v0.6.3
[INFO] [stderr]    Compiling pairsnp-rs v0.2.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 26.43s
[INFO] running `Command { std: "docker" "inspect" "114a4475041eef4ce956ae514233724491436dd4d4f1e3100093b68cc522451a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "114a4475041eef4ce956ae514233724491436dd4d4f1e3100093b68cc522451a", kill_on_drop: false }`
[INFO] [stdout] 114a4475041eef4ce956ae514233724491436dd4d4f1e3100093b68cc522451a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] ee9a0e9814ec749f75415b5ef6924ca665c5d42d9872843b02bb780d63dc3ed8
[INFO] running `Command { std: "docker" "start" "-a" "ee9a0e9814ec749f75415b5ef6924ca665c5d42d9872843b02bb780d63dc3ed8", kill_on_drop: false }`
[INFO] [stderr]    Compiling pairsnp-rs v0.2.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1.33s
[INFO] running `Command { std: "docker" "inspect" "ee9a0e9814ec749f75415b5ef6924ca665c5d42d9872843b02bb780d63dc3ed8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ee9a0e9814ec749f75415b5ef6924ca665c5d42d9872843b02bb780d63dc3ed8", kill_on_drop: false }`
[INFO] [stdout] ee9a0e9814ec749f75415b5ef6924ca665c5d42d9872843b02bb780d63dc3ed8
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] 1547a22aa650ecf030f5c9c768a34f872c74408bac4bcbf5c2065970cfd5e86b
[INFO] running `Command { std: "docker" "start" "-a" "1547a22aa650ecf030f5c9c768a34f872c74408bac4bcbf5c2065970cfd5e86b", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.09s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/pairsnp_rs-4615b2edddb30afc)
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stdout] test tests::test_parallel_build_nucleotide_bitmaps ... ignored
[INFO] [stdout] test tests::test_write_matrix_with_indices ... ok
[INFO] [stdout] test tests::test_write_matrix_dense ... ok
[INFO] [stdout] test tests::test_calculate_pairwise_snp_distances ... ok
[INFO] [stdout] test tests::test_write_matrix_sparse ... ok
[INFO] [stdout] test tests::test_build_nucleotide_bitmaps ... ok
[INFO] [stdout] test tests::test_build_nucleotide_bitmaps_invalid_char - should panic ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 6 passed; 0 failed; 1 ignored; 0 measured; 0 filtered out; finished in 0.14s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "1547a22aa650ecf030f5c9c768a34f872c74408bac4bcbf5c2065970cfd5e86b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1547a22aa650ecf030f5c9c768a34f872c74408bac4bcbf5c2065970cfd5e86b", kill_on_drop: false }`
[INFO] [stdout] 1547a22aa650ecf030f5c9c768a34f872c74408bac4bcbf5c2065970cfd5e86b