[INFO] fetching crate needleman 0.2.0...
[INFO] testing needleman-0.2.0 against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_with_libc_patch_0
[INFO] extracting crate needleman 0.2.0 into /workspace/builds/worker-4-tc1/source
[INFO] started tweaking crates.io crate needleman 0.2.0
[INFO] finished tweaking crates.io crate needleman 0.2.0
[INFO] tweaked toml for crates.io crate needleman 0.2.0 written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate needleman 0.2.0 on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate needleman 0.2.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 7a6a99a7f3658829293001ee351555eea780bdad6e47e8c61cdb2630383228e7
[INFO] running `Command { std: "docker" "start" "-a" "7a6a99a7f3658829293001ee351555eea780bdad6e47e8c61cdb2630383228e7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "7a6a99a7f3658829293001ee351555eea780bdad6e47e8c61cdb2630383228e7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7a6a99a7f3658829293001ee351555eea780bdad6e47e8c61cdb2630383228e7", kill_on_drop: false }`
[INFO] [stdout] 7a6a99a7f3658829293001ee351555eea780bdad6e47e8c61cdb2630383228e7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] d896a6e59743e744f410dcc191166d853fb71c6b20bddfe55959d8e01363f724
[INFO] running `Command { std: "docker" "start" "-a" "d896a6e59743e744f410dcc191166d853fb71c6b20bddfe55959d8e01363f724", kill_on_drop: false }`
[INFO] [stderr]    Compiling needleman v0.2.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: function `preprocess_gene` is never used
[INFO] [stdout]  --> src/main.rs:7:4
[INFO] [stdout]   |
[INFO] [stdout] 7 | fn preprocess_gene(s:String) -> String{
[INFO] [stdout]   |    ^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `AlignmentResult` is never constructed
[INFO] [stdout]  --> src/needleman.rs:6:12
[INFO] [stdout]   |
[INFO] [stdout] 6 | pub struct AlignmentResult {
[INFO] [stdout]   |            ^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `AlignmentResult` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function `new` is never used
[INFO] [stdout]   --> src/needleman.rs:13:12
[INFO] [stdout]    |
[INFO] [stdout] 12 | impl AlignmentResult {
[INFO] [stdout]    | -------------------- associated function in this implementation
[INFO] [stdout] 13 |     pub fn new(score: i32, res1: String, res2: String) -> AlignmentResult {
[INFO] [stdout]    |            ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `KbandAlignmentResult` is never constructed
[INFO] [stdout]   --> src/needleman.rs:19:12
[INFO] [stdout]    |
[INFO] [stdout] 19 | pub struct KbandAlignmentResult {
[INFO] [stdout]    |            ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `KbandAlignmentResult` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function `new` is never used
[INFO] [stdout]   --> src/needleman.rs:28:12
[INFO] [stdout]    |
[INFO] [stdout] 27 | impl KbandAlignmentResult {
[INFO] [stdout]    | ------------------------- associated function in this implementation
[INFO] [stdout] 28 |     pub fn new(score: i32, res1: String, res2: String, k_band: usize) -> KbandAlignmentResult {
[INFO] [stdout]    |            ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `needleman` is never used
[INFO] [stdout]   --> src/needleman.rs:47:8
[INFO] [stdout]    |
[INFO] [stdout] 47 | pub fn needleman(s1: &str, s2: &str, match_score: i32, mismatch_score: i32, indel_score: i32, ignore_case: bool, any_char: char) -> Align...
[INFO] [stdout]    |        ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `kband_needleman` is never used
[INFO] [stdout]    --> src/needleman.rs:133:8
[INFO] [stdout]     |
[INFO] [stdout] 133 | pub fn kband_needleman(s1: &str, s2: &str, match_score: i32, mismatch_score: i32, indel_score: i32, ignore_case: bool, any_char: char) ->...
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 0.76s
[INFO] running `Command { std: "docker" "inspect" "d896a6e59743e744f410dcc191166d853fb71c6b20bddfe55959d8e01363f724", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d896a6e59743e744f410dcc191166d853fb71c6b20bddfe55959d8e01363f724", kill_on_drop: false }`
[INFO] [stdout] d896a6e59743e744f410dcc191166d853fb71c6b20bddfe55959d8e01363f724
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] afe6c6fb5781b7e42f799a8d083d89708365632c299633edf4b47a59a6d8c490
[INFO] running `Command { std: "docker" "start" "-a" "afe6c6fb5781b7e42f799a8d083d89708365632c299633edf4b47a59a6d8c490", kill_on_drop: false }`
[INFO] [stderr]    Compiling needleman v0.2.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: function `preprocess_gene` is never used
[INFO] [stdout]  --> src/main.rs:7:4
[INFO] [stdout]   |
[INFO] [stdout] 7 | fn preprocess_gene(s:String) -> String{
[INFO] [stdout]   |    ^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `AlignmentResult` is never constructed
[INFO] [stdout]  --> src/needleman.rs:6:12
[INFO] [stdout]   |
[INFO] [stdout] 6 | pub struct AlignmentResult {
[INFO] [stdout]   |            ^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `AlignmentResult` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function `new` is never used
[INFO] [stdout]   --> src/needleman.rs:13:12
[INFO] [stdout]    |
[INFO] [stdout] 12 | impl AlignmentResult {
[INFO] [stdout]    | -------------------- associated function in this implementation
[INFO] [stdout] 13 |     pub fn new(score: i32, res1: String, res2: String) -> AlignmentResult {
[INFO] [stdout]    |            ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `KbandAlignmentResult` is never constructed
[INFO] [stdout]   --> src/needleman.rs:19:12
[INFO] [stdout]    |
[INFO] [stdout] 19 | pub struct KbandAlignmentResult {
[INFO] [stdout]    |            ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `KbandAlignmentResult` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function `new` is never used
[INFO] [stdout]   --> src/needleman.rs:28:12
[INFO] [stdout]    |
[INFO] [stdout] 27 | impl KbandAlignmentResult {
[INFO] [stdout]    | ------------------------- associated function in this implementation
[INFO] [stdout] 28 |     pub fn new(score: i32, res1: String, res2: String, k_band: usize) -> KbandAlignmentResult {
[INFO] [stdout]    |            ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `needleman` is never used
[INFO] [stdout]   --> src/needleman.rs:47:8
[INFO] [stdout]    |
[INFO] [stdout] 47 | pub fn needleman(s1: &str, s2: &str, match_score: i32, mismatch_score: i32, indel_score: i32, ignore_case: bool, any_char: char) -> Align...
[INFO] [stdout]    |        ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `kband_needleman` is never used
[INFO] [stdout]    --> src/needleman.rs:133:8
[INFO] [stdout]     |
[INFO] [stdout] 133 | pub fn kband_needleman(s1: &str, s2: &str, match_score: i32, mismatch_score: i32, indel_score: i32, ignore_case: bool, any_char: char) ->...
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.65s
[INFO] running `Command { std: "docker" "inspect" "afe6c6fb5781b7e42f799a8d083d89708365632c299633edf4b47a59a6d8c490", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "afe6c6fb5781b7e42f799a8d083d89708365632c299633edf4b47a59a6d8c490", kill_on_drop: false }`
[INFO] [stdout] afe6c6fb5781b7e42f799a8d083d89708365632c299633edf4b47a59a6d8c490
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] 10e96bc288171b9cb4621dc3557aa1e8730b43d272d66c5d047e8d24f15d17eb
[INFO] running `Command { std: "docker" "start" "-a" "10e96bc288171b9cb4621dc3557aa1e8730b43d272d66c5d047e8d24f15d17eb", kill_on_drop: false }`
[INFO] [stderr] warning: function `preprocess_gene` is never used
[INFO] [stderr]  --> src/main.rs:7:4
[INFO] [stderr]   |
[INFO] [stderr] 7 | fn preprocess_gene(s:String) -> String{
[INFO] [stderr]   |    ^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: struct `AlignmentResult` is never constructed
[INFO] [stderr]  --> src/needleman.rs:6:12
[INFO] [stderr]   |
[INFO] [stderr] 6 | pub struct AlignmentResult {
[INFO] [stderr]   |            ^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `AlignmentResult` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stderr] 
[INFO] [stderr] warning: associated function `new` is never used
[INFO] [stderr]   --> src/needleman.rs:13:12
[INFO] [stderr]    |
[INFO] [stderr] 12 | impl AlignmentResult {
[INFO] [stderr]    | -------------------- associated function in this implementation
[INFO] [stderr] 13 |     pub fn new(score: i32, res1: String, res2: String) -> AlignmentResult {
[INFO] [stderr]    |            ^^^
[INFO] [stderr] 
[INFO] [stderr] warning: struct `KbandAlignmentResult` is never constructed
[INFO] [stderr]   --> src/needleman.rs:19:12
[INFO] [stderr]    |
[INFO] [stderr] 19 | pub struct KbandAlignmentResult {
[INFO] [stderr]    |            ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `KbandAlignmentResult` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stderr] 
[INFO] [stderr] warning: associated function `new` is never used
[INFO] [stderr]   --> src/needleman.rs:28:12
[INFO] [stderr]    |
[INFO] [stderr] 27 | impl KbandAlignmentResult {
[INFO] [stderr]    | ------------------------- associated function in this implementation
[INFO] [stderr] 28 |     pub fn new(score: i32, res1: String, res2: String, k_band: usize) -> KbandAlignmentResult {
[INFO] [stderr]    |            ^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function `needleman` is never used
[INFO] [stderr]   --> src/needleman.rs:47:8
[INFO] [stderr]    |
[INFO] [stderr] 47 | pub fn needleman(s1: &str, s2: &str, match_score: i32, mismatch_score: i32, indel_score: i32, ignore_case: bool, any_char: char) -> Align...
[INFO] [stderr]    |        ^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function `kband_needleman` is never used
[INFO] [stderr]    --> src/needleman.rs:133:8
[INFO] [stderr]     |
[INFO] [stderr] 133 | pub fn kband_needleman(s1: &str, s2: &str, match_score: i32, mismatch_score: i32, indel_score: i32, ignore_case: bool, any_char: char) ->...
[INFO] [stderr]     |        ^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: `needleman` (bin "needleman" test) generated 7 warnings
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.05s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/needleman-89adca37aaf79d78)
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/needleman-c18f5039c2c53f50)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "10e96bc288171b9cb4621dc3557aa1e8730b43d272d66c5d047e8d24f15d17eb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "10e96bc288171b9cb4621dc3557aa1e8730b43d272d66c5d047e8d24f15d17eb", kill_on_drop: false }`
[INFO] [stdout] 10e96bc288171b9cb4621dc3557aa1e8730b43d272d66c5d047e8d24f15d17eb