[INFO] fetching crate hts 0.1.18... [INFO] testing hts-0.1.18 against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_with_libc_patch_0 [INFO] extracting crate hts 0.1.18 into /workspace/builds/worker-6-tc1/source [INFO] started tweaking crates.io crate hts 0.1.18 [INFO] finished tweaking crates.io crate hts 0.1.18 [INFO] tweaked toml for crates.io crate hts 0.1.18 written to /workspace/builds/worker-6-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate hts 0.1.18 on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate hts 0.1.18 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 1c0ec8aa714761c2970d67387ca1e226a757d5a3002edf954d42feba13e8b3cd [INFO] running `Command { std: "docker" "start" "-a" "1c0ec8aa714761c2970d67387ca1e226a757d5a3002edf954d42feba13e8b3cd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1c0ec8aa714761c2970d67387ca1e226a757d5a3002edf954d42feba13e8b3cd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1c0ec8aa714761c2970d67387ca1e226a757d5a3002edf954d42feba13e8b3cd", kill_on_drop: false }` [INFO] [stdout] 1c0ec8aa714761c2970d67387ca1e226a757d5a3002edf954d42feba13e8b3cd [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 43b790e3b1781aff4803dda58403f5540d785a5aa7e62c86184d322f69210714 [INFO] running `Command { std: "docker" "start" "-a" "43b790e3b1781aff4803dda58403f5540d785a5aa7e62c86184d322f69210714", kill_on_drop: false }` [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling libc v0.2.93 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling version_check v0.9.3 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling proc-macro2 v1.0.26 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling regex-syntax v0.6.23 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling libloading v0.7.0 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling clang-sys v1.2.0 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling regex v1.4.5 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling hts v0.1.18 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `hts v0.1.18 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hts-366051f11f12a99c/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/x86_64-unknown-linux-musl/debug/build/hts-0f880300383d2716/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/x86_64-unknown-linux-musl/debug/build/hts-0f880300383d2716/out/htslib [INFO] [stderr] + git clone --recursive -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at build.rs:33:5: [INFO] [stderr] assertion failed: Command::new("bash").args(&["build_htslib.sh", [INFO] [stderr] &version]).stdout(std::process::Stdio::null()).spawn().expect("Unable to build htslib").wait().unwrap().success() [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x64e1e607f7a2 - std::backtrace_rs::backtrace::libunwind::trace::h7c95ef939f65c294 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stderr] 1: 0x64e1e607f7a2 - std::backtrace_rs::backtrace::trace_unsynchronized::h32c948083968be8c [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stderr] 2: 0x64e1e607f7a2 - std::sys::backtrace::_print_fmt::hbce1ec88d06e088c [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:66:9 [INFO] [stderr] 3: 0x64e1e607f7a2 - ::fmt::hb9fc0e74cd3e2ce7 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:39:26 [INFO] [stderr] 4: 0x64e1e60a6ae3 - core::fmt::rt::Argument::fmt::h6807405d250eb341 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/fmt/rt.rs:173:76 [INFO] [stderr] 5: 0x64e1e60a6ae3 - core::fmt::write::h44c4c28224d1d425 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/fmt/mod.rs:1460:25 [INFO] [stderr] 6: 0x64e1e607c903 - std::io::default_write_fmt::h2bbef4d99fdfa1fb [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/io/mod.rs:639:11 [INFO] [stderr] 7: 0x64e1e607c903 - std::io::Write::write_fmt::h7c137d8faa040f47 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/io/mod.rs:1954:13 [INFO] [stderr] 8: 0x64e1e607f5f2 - std::sys::backtrace::BacktraceLock::print::hdd765023e0895687 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:42:9 [INFO] [stderr] 9: 0x64e1e6080ad2 - std::panicking::default_hook::{{closure}}::h3703709d08ff9881 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:300:27 [INFO] [stderr] 10: 0x64e1e60808d5 - std::panicking::default_hook::h52db45a3301fd26f [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:327:9 [INFO] [stderr] 11: 0x64e1e60814e2 - std::panicking::rust_panic_with_hook::h6c4d7d69d053bb09 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:833:13 [INFO] [stderr] 12: 0x64e1e6081246 - std::panicking::begin_panic_handler::{{closure}}::h7b56674cf0518b4b [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:699:13 [INFO] [stderr] 13: 0x64e1e607fc99 - std::sys::backtrace::__rust_end_short_backtrace::h3266312f35a9262a [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:168:18 [INFO] [stderr] 14: 0x64e1e6080f0d - __rustc[f4ffc7196a45a630]::rust_begin_unwind [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:697:5 [INFO] [stderr] 15: 0x64e1e60a4e70 - core::panicking::panic_fmt::h42f13c80076c805d [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/panicking.rs:75:14 [INFO] [stderr] 16: 0x64e1e60a4efc - core::panicking::panic::he9e437e8f1dfca16 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/panicking.rs:145:5 [INFO] [stderr] 17: 0x64e1e5c56f1b - build_script_build::build_own_htslib::h10fafd5ec4fcc718 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:33:5 [INFO] [stderr] 18: 0x64e1e5c573dd - build_script_build::main::hfd7ab0f8daf8a367 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:65:9 [INFO] [stderr] 19: 0x64e1e5c53dab - core::ops::function::FnOnce::call_once::h2047b10451744616 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/ops/function.rs:250:5 [INFO] [stderr] 20: 0x64e1e5c539cd - std::sys::backtrace::__rust_begin_short_backtrace::h89a9b15d1ef7daec [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:152:18 [INFO] [stderr] 21: 0x64e1e5c539a1 - std::rt::lang_start::{{closure}}::h41c85b16e83e382b [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/rt.rs:206:18 [INFO] [stderr] 22: 0x64e1e6077f00 - core::ops::function::impls:: for &F>::call_once::h776d28ad5d8e3065 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/ops/function.rs:284:21 [INFO] [stderr] 23: 0x64e1e6077f00 - std::panicking::catch_unwind::do_call::hc52b7f8762002282 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:589:40 [INFO] [stderr] 24: 0x64e1e6077f00 - std::panicking::catch_unwind::h65ae6675cb87c293 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:552:19 [INFO] [stderr] 25: 0x64e1e6077f00 - std::panic::catch_unwind::h4bf88f8de30a831e [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panic.rs:359:14 [INFO] [stderr] 26: 0x64e1e6077f00 - std::rt::lang_start_internal::{{closure}}::he18cde089aa4ecf1 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/rt.rs:175:24 [INFO] [stderr] 27: 0x64e1e6077f00 - std::panicking::catch_unwind::do_call::h8d614f4790efaa4f [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:589:40 [INFO] [stderr] 28: 0x64e1e6077f00 - std::panicking::catch_unwind::he616f21a5745eff4 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:552:19 [INFO] [stderr] 29: 0x64e1e6077f00 - std::panic::catch_unwind::ha12dd71f2a653c0c [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panic.rs:359:14 [INFO] [stderr] 30: 0x64e1e6077f00 - std::rt::lang_start_internal::hacfd5a6cee565422 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/rt.rs:171:5 [INFO] [stderr] 31: 0x64e1e5c53987 - std::rt::lang_start::he4aca6bf725fbeb3 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/rt.rs:205:5 [INFO] [stderr] 32: 0x64e1e5c579ee - main [INFO] [stderr] 33: 0x7cec830f81ca - [INFO] [stderr] 34: 0x7cec830f828b - __libc_start_main [INFO] [stderr] 35: 0x64e1e5c52b25 - _start [INFO] [stderr] 36: 0x0 - [INFO] running `Command { std: "docker" "inspect" "43b790e3b1781aff4803dda58403f5540d785a5aa7e62c86184d322f69210714", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "43b790e3b1781aff4803dda58403f5540d785a5aa7e62c86184d322f69210714", kill_on_drop: false }` [INFO] [stdout] 43b790e3b1781aff4803dda58403f5540d785a5aa7e62c86184d322f69210714