[INFO] fetching crate heme 0.3.2... [INFO] testing heme-0.3.2 against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_with_libc_patch_0 [INFO] extracting crate heme 0.3.2 into /workspace/builds/worker-6-tc1/source [INFO] started tweaking crates.io crate heme 0.3.2 [INFO] finished tweaking crates.io crate heme 0.3.2 [INFO] tweaked toml for crates.io crate heme 0.3.2 written to /workspace/builds/worker-6-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate heme 0.3.2 on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate heme 0.3.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 02ad40a2b9be161083380686fce9a5a1dc40f7414a9d19370f0faa4e1e5c0e4e [INFO] running `Command { std: "docker" "start" "-a" "02ad40a2b9be161083380686fce9a5a1dc40f7414a9d19370f0faa4e1e5c0e4e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "02ad40a2b9be161083380686fce9a5a1dc40f7414a9d19370f0faa4e1e5c0e4e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "02ad40a2b9be161083380686fce9a5a1dc40f7414a9d19370f0faa4e1e5c0e4e", kill_on_drop: false }` [INFO] [stdout] 02ad40a2b9be161083380686fce9a5a1dc40f7414a9d19370f0faa4e1e5c0e4e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 5c0e75f25019a8f515a564f1c92f07940339e7fd8732122b98db1f5e23a70bbd [INFO] running `Command { std: "docker" "start" "-a" "5c0e75f25019a8f515a564f1c92f07940339e7fd8732122b98db1f5e23a70bbd", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] [stderr] Compiling heme v0.3.2 (/opt/rustwide/workdir) [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/sampling.rs:20:29 [INFO] [stdout] | [INFO] [stdout] 20 | pub components: Vec>, [INFO] [stdout] | ^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] help: if this is a dyn-compatible trait, use `dyn` [INFO] [stdout] | [INFO] [stdout] 20 | pub components: Vec>, [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/io.rs:97:46 [INFO] [stdout] | [INFO] [stdout] 97 | pub fn run(config: Config) -> Result<(), Box> { [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: if this is a dyn-compatible trait, use `dyn` [INFO] [stdout] | [INFO] [stdout] 97 | pub fn run(config: Config) -> Result<(), Box> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `protocol_name` [INFO] [stdout] --> src/sampling.rs:4:21 [INFO] [stdout] | [INFO] [stdout] 4 | pub fn get_protocol(protocol_name: &str) -> Protocol { [INFO] [stdout] | ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_protocol_name` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pose` [INFO] [stdout] --> src/sampling.rs:50:21 [INFO] [stdout] | [INFO] [stdout] 50 | fn apply(&self, pose: &mut Pose) { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_pose` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `a1` [INFO] [stdout] --> src/scoring.rs:24:39 [INFO] [stdout] | [INFO] [stdout] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_a1` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `a2` [INFO] [stdout] --> src/scoring.rs:24:50 [INFO] [stdout] | [INFO] [stdout] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_a2` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `atoms`, `residue_name`, and `residue_index` are never read [INFO] [stdout] --> src/conformation.rs:52:5 [INFO] [stdout] | [INFO] [stdout] 51 | pub struct Residue { [INFO] [stdout] | ------- fields in this struct [INFO] [stdout] 52 | atoms: Vec, [INFO] [stdout] | ^^^^^ [INFO] [stdout] 53 | residue_name: String, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] 54 | residue_index: i32, [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 0.46s [INFO] running `Command { std: "docker" "inspect" "5c0e75f25019a8f515a564f1c92f07940339e7fd8732122b98db1f5e23a70bbd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5c0e75f25019a8f515a564f1c92f07940339e7fd8732122b98db1f5e23a70bbd", kill_on_drop: false }` [INFO] [stdout] 5c0e75f25019a8f515a564f1c92f07940339e7fd8732122b98db1f5e23a70bbd [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] ed46699e0f7cac3760d098328c353873b3ecfc8f7fe424b31d2831c72f686780 [INFO] running `Command { std: "docker" "start" "-a" "ed46699e0f7cac3760d098328c353873b3ecfc8f7fe424b31d2831c72f686780", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/sampling.rs:20:29 [INFO] [stdout] | [INFO] [stdout] 20 | pub components: Vec>, [INFO] [stdout] | ^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] help: if this is a dyn-compatible trait, use `dyn` [INFO] [stdout] | [INFO] [stdout] 20 | pub components: Vec>, [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/io.rs:97:46 [INFO] [stdout] | [INFO] [stdout] 97 | pub fn run(config: Config) -> Result<(), Box> { [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: if this is a dyn-compatible trait, use `dyn` [INFO] [stdout] | [INFO] [stdout] 97 | pub fn run(config: Config) -> Result<(), Box> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `protocol_name` [INFO] [stdout] --> src/sampling.rs:4:21 [INFO] [stdout] | [INFO] [stdout] 4 | pub fn get_protocol(protocol_name: &str) -> Protocol { [INFO] [stdout] | ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_protocol_name` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pose` [INFO] [stdout] --> src/sampling.rs:50:21 [INFO] [stdout] | [INFO] [stdout] 50 | fn apply(&self, pose: &mut Pose) { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_pose` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `a1` [INFO] [stdout] --> src/scoring.rs:24:39 [INFO] [stdout] | [INFO] [stdout] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_a1` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `a2` [INFO] [stdout] --> src/scoring.rs:24:50 [INFO] [stdout] | [INFO] [stdout] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_a2` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `atoms`, `residue_name`, and `residue_index` are never read [INFO] [stdout] --> src/conformation.rs:52:5 [INFO] [stdout] | [INFO] [stdout] 51 | pub struct Residue { [INFO] [stdout] | ------- fields in this struct [INFO] [stdout] 52 | atoms: Vec, [INFO] [stdout] | ^^^^^ [INFO] [stdout] 53 | residue_name: String, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] 54 | residue_index: i32, [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling heme v0.3.2 (/opt/rustwide/workdir) [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/sampling.rs:20:29 [INFO] [stdout] | [INFO] [stdout] 20 | pub components: Vec>, [INFO] [stdout] | ^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] help: if this is a dyn-compatible trait, use `dyn` [INFO] [stdout] | [INFO] [stdout] 20 | pub components: Vec>, [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/io.rs:97:46 [INFO] [stdout] | [INFO] [stdout] 97 | pub fn run(config: Config) -> Result<(), Box> { [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: if this is a dyn-compatible trait, use `dyn` [INFO] [stdout] | [INFO] [stdout] 97 | pub fn run(config: Config) -> Result<(), Box> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `protocol_name` [INFO] [stdout] --> src/sampling.rs:4:21 [INFO] [stdout] | [INFO] [stdout] 4 | pub fn get_protocol(protocol_name: &str) -> Protocol { [INFO] [stdout] | ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_protocol_name` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pose` [INFO] [stdout] --> src/sampling.rs:50:21 [INFO] [stdout] | [INFO] [stdout] 50 | fn apply(&self, pose: &mut Pose) { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_pose` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `a1` [INFO] [stdout] --> src/scoring.rs:24:39 [INFO] [stdout] | [INFO] [stdout] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_a1` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `a2` [INFO] [stdout] --> src/scoring.rs:24:50 [INFO] [stdout] | [INFO] [stdout] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_a2` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `atoms`, `residue_name`, and `residue_index` are never read [INFO] [stdout] --> src/conformation.rs:52:5 [INFO] [stdout] | [INFO] [stdout] 51 | pub struct Residue { [INFO] [stdout] | ------- fields in this struct [INFO] [stdout] 52 | atoms: Vec, [INFO] [stdout] | ^^^^^ [INFO] [stdout] 53 | residue_name: String, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] 54 | residue_index: i32, [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `H` should have a snake case name [INFO] [stdout] --> src/io.rs:152:12 [INFO] [stdout] | [INFO] [stdout] 152 | fn H(l: &f64) -> f64 { [INFO] [stdout] | ^ help: convert the identifier to snake case: `h` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.38s [INFO] running `Command { std: "docker" "inspect" "ed46699e0f7cac3760d098328c353873b3ecfc8f7fe424b31d2831c72f686780", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ed46699e0f7cac3760d098328c353873b3ecfc8f7fe424b31d2831c72f686780", kill_on_drop: false }` [INFO] [stdout] ed46699e0f7cac3760d098328c353873b3ecfc8f7fe424b31d2831c72f686780 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 09e46a2fe1a87104b7e654adc51d0a9fc586ff034f1daeab3434fb444bd07e6e [INFO] running `Command { std: "docker" "start" "-a" "09e46a2fe1a87104b7e654adc51d0a9fc586ff034f1daeab3434fb444bd07e6e", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/sampling.rs:20:29 [INFO] [stderr] | [INFO] [stderr] 20 | pub components: Vec>, [INFO] [stderr] | ^^^^ [INFO] [stderr] | [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] help: if this is a dyn-compatible trait, use `dyn` [INFO] [stderr] | [INFO] [stderr] 20 | pub components: Vec>, [INFO] [stderr] | +++ [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/io.rs:97:46 [INFO] [stderr] | [INFO] [stderr] 97 | pub fn run(config: Config) -> Result<(), Box> { [INFO] [stderr] | ^^^^^ [INFO] [stderr] | [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see [INFO] [stderr] help: if this is a dyn-compatible trait, use `dyn` [INFO] [stderr] | [INFO] [stderr] 97 | pub fn run(config: Config) -> Result<(), Box> { [INFO] [stderr] | +++ [INFO] [stderr] [INFO] [stderr] warning: unused variable: `protocol_name` [INFO] [stderr] --> src/sampling.rs:4:21 [INFO] [stderr] | [INFO] [stderr] 4 | pub fn get_protocol(protocol_name: &str) -> Protocol { [INFO] [stderr] | ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_protocol_name` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `pose` [INFO] [stderr] --> src/sampling.rs:50:21 [INFO] [stderr] | [INFO] [stderr] 50 | fn apply(&self, pose: &mut Pose) { [INFO] [stderr] | ^^^^ help: if this is intentional, prefix it with an underscore: `_pose` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `a1` [INFO] [stderr] --> src/scoring.rs:24:39 [INFO] [stderr] | [INFO] [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 { [INFO] [stderr] | ^^ help: if this is intentional, prefix it with an underscore: `_a1` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `a2` [INFO] [stderr] --> src/scoring.rs:24:50 [INFO] [stderr] | [INFO] [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 { [INFO] [stderr] | ^^ help: if this is intentional, prefix it with an underscore: `_a2` [INFO] [stderr] [INFO] [stderr] warning: fields `atoms`, `residue_name`, and `residue_index` are never read [INFO] [stderr] --> src/conformation.rs:52:5 [INFO] [stderr] | [INFO] [stderr] 51 | pub struct Residue { [INFO] [stderr] | ------- fields in this struct [INFO] [stderr] 52 | atoms: Vec, [INFO] [stderr] | ^^^^^ [INFO] [stderr] 53 | residue_name: String, [INFO] [stderr] | ^^^^^^^^^^^^ [INFO] [stderr] 54 | residue_index: i32, [INFO] [stderr] | ^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: `heme` (lib) generated 7 warnings (run `cargo fix --lib -p heme` to apply 2 suggestions) [INFO] [stderr] warning: function `H` should have a snake case name [INFO] [stderr] --> src/io.rs:152:12 [INFO] [stderr] | [INFO] [stderr] 152 | fn H(l: &f64) -> f64 { [INFO] [stderr] | ^ help: convert the identifier to snake case: `h` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_snake_case)]` on by default [INFO] [stderr] [INFO] [stderr] warning: `heme` (lib test) generated 8 warnings (7 duplicates) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.01s [INFO] [stdout] [INFO] [stdout] running 4 tests [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/heme-fddf5b5bf9006010) [INFO] [stdout] test io::tests::test_entropy_function ... ok [INFO] [stdout] test io::tests::test_lennard_jones_atom_loading ... ok [INFO] [stdout] test io::tests::test_new_atoms_testy ... ok [INFO] [stdout] test io::tests::test_pdb_parsing ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/heme-2ee489d9d22235d0) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "09e46a2fe1a87104b7e654adc51d0a9fc586ff034f1daeab3434fb444bd07e6e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "09e46a2fe1a87104b7e654adc51d0a9fc586ff034f1daeab3434fb444bd07e6e", kill_on_drop: false }` [INFO] [stdout] 09e46a2fe1a87104b7e654adc51d0a9fc586ff034f1daeab3434fb444bd07e6e