[INFO] fetching crate grumpy 1.0.1...
[INFO] testing grumpy-1.0.1 against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_with_libc_patch_0
[INFO] extracting crate grumpy 1.0.1 into /workspace/builds/worker-5-tc1/source
[INFO] started tweaking crates.io crate grumpy 1.0.1
[INFO] finished tweaking crates.io crate grumpy 1.0.1
[INFO] tweaked toml for crates.io crate grumpy 1.0.1 written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate grumpy 1.0.1 on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate grumpy 1.0.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded pyo3-build-config v0.25.1
[INFO] [stderr]   Downloaded pyo3-macros v0.25.1
[INFO] [stderr]   Downloaded vcf v0.6.1
[INFO] [stderr]   Downloaded pyo3-ffi v0.25.1
[INFO] [stderr]   Downloaded pyo3-macros-backend v0.25.1
[INFO] [stderr]   Downloaded pyo3 v0.25.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] d19daa7137703dd6d9852e01a9b93dd2e79907d58d413350817a1c595a197c33
[INFO] running `Command { std: "docker" "start" "-a" "d19daa7137703dd6d9852e01a9b93dd2e79907d58d413350817a1c595a197c33", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "d19daa7137703dd6d9852e01a9b93dd2e79907d58d413350817a1c595a197c33", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d19daa7137703dd6d9852e01a9b93dd2e79907d58d413350817a1c595a197c33", kill_on_drop: false }`
[INFO] [stdout] d19daa7137703dd6d9852e01a9b93dd2e79907d58d413350817a1c595a197c33
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] 786a01b3eae48162f830a27ca52912ce793b521f881424355a2b83f30e64df56
[INFO] running `Command { std: "docker" "start" "-a" "786a01b3eae48162f830a27ca52912ce793b521f881424355a2b83f30e64df56", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.95
[INFO] [stderr]    Compiling unicode-ident v1.0.18
[INFO] [stderr]    Compiling target-lexicon v0.13.2
[INFO] [stderr]    Compiling autocfg v1.4.0
[INFO] [stderr]    Compiling once_cell v1.21.3
[INFO] [stderr]    Compiling version_check v0.9.5
[INFO] [stderr]    Compiling libc v0.2.173
[INFO] [stderr]    Compiling rustversion v1.0.21
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling siphasher v1.0.1
[INFO] [stderr]    Compiling crossbeam-utils v0.8.21
[INFO] [stderr]    Compiling parking_lot_core v0.9.11
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]    Compiling cfg-if v1.0.1
[INFO] [stderr]    Compiling memchr v2.7.5
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling scopeguard v1.2.0
[INFO] [stderr]    Compiling phf_shared v0.11.3
[INFO] [stderr]    Compiling version_check v0.1.5
[INFO] [stderr]    Compiling smallvec v1.15.1
[INFO] [stderr]    Compiling utf8parse v0.2.2
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling anstyle-parse v0.2.7
[INFO] [stderr]    Compiling is_terminal_polyfill v1.70.1
[INFO] [stderr]    Compiling anstyle v1.0.11
[INFO] [stderr]    Compiling anstyle-query v1.1.3
[INFO] [stderr]    Compiling unicode-xid v0.2.6
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]    Compiling nom v4.2.3
[INFO] [stderr]    Compiling phf_generator v0.11.3
[INFO] [stderr]    Compiling quote v1.0.40
[INFO] [stderr]    Compiling colorchoice v1.0.4
[INFO] [stderr]    Compiling clap_lex v0.7.5
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling anstream v0.6.19
[INFO] [stderr]    Compiling lock_api v0.4.13
[INFO] [stderr]    Compiling memoffset v0.9.1
[INFO] [stderr]    Compiling syn v2.0.103
[INFO] [stderr]    Compiling string_cache_codegen v0.5.4
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling precomputed-hash v0.1.1
[INFO] [stderr]    Compiling pyo3-build-config v0.25.1
[INFO] [stderr]    Compiling err-derive v0.3.1
[INFO] [stderr]    Compiling new_debug_unreachable v1.0.6
[INFO] [stderr]    Compiling strsim v0.11.1
[INFO] [stderr]    Compiling crossbeam-deque v0.8.6
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling clap_builder v4.5.40
[INFO] [stderr]    Compiling itertools v0.10.5
[INFO] [stderr]    Compiling unindent v0.2.4
[INFO] [stderr]    Compiling gb-io v0.7.1
[INFO] [stderr]    Compiling parking_lot v0.12.4
[INFO] [stderr]    Compiling yansi v1.0.1
[INFO] [stderr]    Compiling diff v0.1.13
[INFO] [stderr]    Compiling indoc v2.0.6
[INFO] [stderr]    Compiling circular v0.3.0
[INFO] [stderr]    Compiling log v0.4.27
[INFO] [stderr]    Compiling rayon v1.10.0
[INFO] [stderr]    Compiling ordered-float v4.6.0
[INFO] [stderr]    Compiling pretty_assertions v1.4.1
[INFO] [stderr]    Compiling synstructure v0.12.6
[INFO] [stderr]    Compiling pyo3-macros-backend v0.25.1
[INFO] [stderr]    Compiling pyo3-ffi v0.25.1
[INFO] [stderr]    Compiling pyo3 v0.25.1
[INFO] [stderr]    Compiling serde_derive v1.0.219
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling clap_derive v4.5.40
[INFO] [stderr]    Compiling vcf v0.6.1
[INFO] [stderr]    Compiling clap v4.5.40
[INFO] [stderr]    Compiling pyo3-macros v0.25.1
[INFO] [stderr]    Compiling string_cache v0.8.9
[INFO] [stderr]    Compiling serde_bytes v0.11.17
[INFO] [stderr]    Compiling grumpy v1.0.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: dropping unsupported crate type `cdylib` for target `x86_64-unknown-linux-musl`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [optimized + debuginfo] target(s) in 1m 10s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nom v4.2.3
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "786a01b3eae48162f830a27ca52912ce793b521f881424355a2b83f30e64df56", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "786a01b3eae48162f830a27ca52912ce793b521f881424355a2b83f30e64df56", kill_on_drop: false }`
[INFO] [stdout] 786a01b3eae48162f830a27ca52912ce793b521f881424355a2b83f30e64df56
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] fce2ada200d976d7e91fdc722cf896a1c5a6c9b002bdf0fe0b2f190f7dd8ea08
[INFO] running `Command { std: "docker" "start" "-a" "fce2ada200d976d7e91fdc722cf896a1c5a6c9b002bdf0fe0b2f190f7dd8ea08", kill_on_drop: false }`
[INFO] [stderr]    Compiling grumpy v1.0.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: dropping unsupported crate type `cdylib` for target `x86_64-unknown-linux-musl`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [optimized + debuginfo] target(s) in 53.66s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nom v4.2.3
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "fce2ada200d976d7e91fdc722cf896a1c5a6c9b002bdf0fe0b2f190f7dd8ea08", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fce2ada200d976d7e91fdc722cf896a1c5a6c9b002bdf0fe0b2f190f7dd8ea08", kill_on_drop: false }`
[INFO] [stdout] fce2ada200d976d7e91fdc722cf896a1c5a6c9b002bdf0fe0b2f190f7dd8ea08
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] 01589827c9ff88975008f5ff88bd717ce35e7c638a12fda3dcb8ad4e46aa8e27
[INFO] running `Command { std: "docker" "start" "-a" "01589827c9ff88975008f5ff88bd717ce35e7c638a12fda3dcb8ad4e46aa8e27", kill_on_drop: false }`
[INFO] [stderr] warning: dropping unsupported crate type `cdylib` for target `x86_64-unknown-linux-musl`
[INFO] [stderr] 
[INFO] [stderr] warning: `grumpy` (lib) generated 1 warning
[INFO] [stderr]     Finished `test` profile [optimized + debuginfo] target(s) in 0.29s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nom v4.2.3
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/grumpy-52ae1fafb9ef7462)
[INFO] [stdout] 
[INFO] [stdout] running 21 tests
[INFO] [stdout] test genome::tests::test_dna_genome ... ok
[INFO] [stdout] test genome::tests::test_dna_genes ... ok
[INFO] [stdout] test vcf::tests::test_instanciate_vcffile ... ok
[INFO] [stdout] test vcf::tests::test_parse_record_for_calls ... ok
[INFO] [stdout] test vcf::tests::test_complex_is_detected ... ok
[INFO] [stdout] test vcf::tests::test_simplify_call ... ok
[INFO] [stdout] test genome::tests::test_large_deletions ... ok
[INFO] [stdout] test genome::tests::test_large_deletions_minor ... ok
[INFO] [stdout] test genome::tests::test_mutate_test_dna ... ok
[INFO] [stdout] test genome::tests::test_invalid_args ... ok
[INFO] [stdout] test vcf::tests::test_snp_dist ... ok
[INFO] [stdout] test genome::tests::test_misc_indel ... ok
[INFO] [stdout] test genome::tests::test_misc ... ok
[INFO] [stdout] test genome::tests::test_covid_genome ... ok
[INFO] [stderr] error: test failed, to rerun pass `--lib`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/grumpy-52ae1fafb9ef7462` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "01589827c9ff88975008f5ff88bd717ce35e7c638a12fda3dcb8ad4e46aa8e27", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "01589827c9ff88975008f5ff88bd717ce35e7c638a12fda3dcb8ad4e46aa8e27", kill_on_drop: false }`
[INFO] [stdout] 01589827c9ff88975008f5ff88bd717ce35e7c638a12fda3dcb8ad4e46aa8e27