[INFO] fetching crate genovo 0.3.2... [INFO] testing genovo-0.3.2 against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_with_libc_patch_0 [INFO] extracting crate genovo 0.3.2 into /workspace/builds/worker-4-tc1/source [INFO] started tweaking crates.io crate genovo 0.3.2 [INFO] finished tweaking crates.io crate genovo 0.3.2 [INFO] tweaked toml for crates.io crate genovo 0.3.2 written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate genovo 0.3.2 on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate genovo 0.3.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded twobit v0.1.1 [INFO] [stderr] Downloaded pattern_partition_prediction v0.1.4 [INFO] [stderr] Downloaded bigdecimal v0.2.2 [INFO] [stderr] Downloaded tabfile v0.2.1 [INFO] [stderr] Downloaded mutexpect v0.2.7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 912b2d451a3dd9b8834c7f6835575d16f2ccb8292c991c838b430ce37220fd76 [INFO] running `Command { std: "docker" "start" "-a" "912b2d451a3dd9b8834c7f6835575d16f2ccb8292c991c838b430ce37220fd76", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "912b2d451a3dd9b8834c7f6835575d16f2ccb8292c991c838b430ce37220fd76", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "912b2d451a3dd9b8834c7f6835575d16f2ccb8292c991c838b430ce37220fd76", kill_on_drop: false }` [INFO] [stdout] 912b2d451a3dd9b8834c7f6835575d16f2ccb8292c991c838b430ce37220fd76 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] c375aab3f0fe0ebc3d6174f3ad0133c34a0dccb950fafe320a74c93911a4505d [INFO] running `Command { std: "docker" "start" "-a" "c375aab3f0fe0ebc3d6174f3ad0133c34a0dccb950fafe320a74c93911a4505d", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.43 [INFO] [stderr] Compiling unicode-ident v1.0.4 [INFO] [stderr] Compiling quote v1.0.21 [INFO] [stderr] Compiling autocfg v1.1.0 [INFO] [stderr] Compiling syn v1.0.99 [INFO] [stderr] Compiling libc v0.2.132 [INFO] [stderr] Compiling serde_derive v1.0.144 [INFO] [stderr] Compiling serde v1.0.144 [INFO] [stderr] Compiling memchr v2.5.0 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling thiserror v1.0.35 [INFO] [stderr] Compiling crc32fast v1.3.2 [INFO] [stderr] Compiling unicode-width v0.1.10 [INFO] [stderr] Compiling anyhow v1.0.65 [INFO] [stderr] Compiling tabfile v0.2.1 [INFO] [stderr] Compiling ppv-lite86 v0.2.16 [INFO] [stderr] Compiling regex-automata v0.1.10 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling miniz_oxide v0.5.4 [INFO] [stderr] Compiling pattern_partition_prediction v0.1.4 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling ryu v1.0.11 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling twobit v0.1.1 [INFO] [stderr] Compiling itoa v0.4.8 [INFO] [stderr] Compiling num-traits v0.2.15 [INFO] [stderr] Compiling num-integer v0.1.45 [INFO] [stderr] Compiling num-bigint v0.3.3 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling flate2 v1.0.24 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling clap v2.34.0 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling bigdecimal v0.2.2 [INFO] [stderr] Compiling thiserror-impl v1.0.35 [INFO] [stderr] Compiling serde_repr v0.1.9 [INFO] [stderr] Compiling bstr v0.2.17 [INFO] [stderr] Compiling mutexpect v0.2.7 [INFO] [stderr] Compiling csv v1.1.6 [INFO] [stderr] Compiling genovo v0.3.2 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 25.12s [INFO] running `Command { std: "docker" "inspect" "c375aab3f0fe0ebc3d6174f3ad0133c34a0dccb950fafe320a74c93911a4505d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c375aab3f0fe0ebc3d6174f3ad0133c34a0dccb950fafe320a74c93911a4505d", kill_on_drop: false }` [INFO] [stdout] c375aab3f0fe0ebc3d6174f3ad0133c34a0dccb950fafe320a74c93911a4505d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] aceaa442e834f55ac36c89fe9ea60380bc39d4b861b888258732c038afa7c832 [INFO] running `Command { std: "docker" "start" "-a" "aceaa442e834f55ac36c89fe9ea60380bc39d4b861b888258732c038afa7c832", kill_on_drop: false }` [INFO] [stderr] Compiling genovo v0.3.2 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 2.33s [INFO] running `Command { std: "docker" "inspect" "aceaa442e834f55ac36c89fe9ea60380bc39d4b861b888258732c038afa7c832", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "aceaa442e834f55ac36c89fe9ea60380bc39d4b861b888258732c038afa7c832", kill_on_drop: false }` [INFO] [stdout] aceaa442e834f55ac36c89fe9ea60380bc39d4b861b888258732c038afa7c832 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 60525408e2fe7ac95d9eba44d65fdbdd9eda5806270e56393af492068fa7408f [INFO] running `Command { std: "docker" "start" "-a" "60525408e2fe7ac95d9eba44d65fdbdd9eda5806270e56393af492068fa7408f", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.04s [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/genovo-8321740b3ff448c7) [INFO] [stdout] [INFO] [stdout] running 8 tests [INFO] [stdout] test counts::tests::test_conf_interval ... ok [INFO] [stdout] test counts::tests::test_p_values ... ok [INFO] [stdout] test transform::tests::test_region_file_io ... ok [INFO] [stdout] test transform::tests::test_gff3_io ... ok [INFO] [stdout] test expect::tests::test_expected_mutations_io ... ok [INFO] [stdout] test enumerate::tests::test_possible_mutations_io ... ok [INFO] [stdout] test sample::tests::test_sampled_mutations_io ... ok [INFO] [stdout] test observed::tests::test_observed_mutations_io ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "60525408e2fe7ac95d9eba44d65fdbdd9eda5806270e56393af492068fa7408f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "60525408e2fe7ac95d9eba44d65fdbdd9eda5806270e56393af492068fa7408f", kill_on_drop: false }` [INFO] [stdout] 60525408e2fe7ac95d9eba44d65fdbdd9eda5806270e56393af492068fa7408f