[INFO] fetching crate gchemol-readwrite 0.1.11... [INFO] testing gchemol-readwrite-0.1.11 against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_with_libc_patch_0 [INFO] extracting crate gchemol-readwrite 0.1.11 into /workspace/builds/worker-4-tc1/source [INFO] started tweaking crates.io crate gchemol-readwrite 0.1.11 [INFO] finished tweaking crates.io crate gchemol-readwrite 0.1.11 [INFO] tweaked toml for crates.io crate gchemol-readwrite 0.1.11 written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate gchemol-readwrite 0.1.11 on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Locking 228 packages to latest compatible versions [INFO] [stderr] Adding gchemol-parser v0.4.6 (available: v0.5.1) [INFO] [stderr] Adding handlebars v4.0.1 (available: v4.5.0) [INFO] [stderr] Adding indexmap v1.9.3 (available: v2.10.0) [INFO] [stderr] Adding lazy-regex v2.5.0 (available: v3.4.1) [INFO] [stderr] Adding minijinja v1.0.22 (available: v2.11.0) [INFO] [stderr] Adding roxmltree v0.18.1 (available: v0.20.0) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded lazy-regex v2.5.0 [INFO] [stderr] Downloaded str_indices v0.4.4 [INFO] [stderr] Downloaded grep v0.3.2 [INFO] [stderr] Downloaded extxyz v0.2.0 [INFO] [stderr] Downloaded grep-cli v0.1.11 [INFO] [stderr] Downloaded grep-regex v0.1.13 [INFO] [stderr] Downloaded grep-reader v0.1.3 [INFO] [stderr] Downloaded grep-printer v0.2.2 [INFO] [stderr] Downloaded handlebars v4.0.1 [INFO] [stderr] Downloaded nalgebra v0.31.4 [INFO] [stderr] Downloaded ropey v1.6.1 [INFO] [stderr] Downloaded gchemol-parser v0.4.6 [INFO] [stderr] Downloaded minijinja v1.0.22 [INFO] [stderr] Downloaded gchemol-geometry v0.1.1 [INFO] [stderr] Downloaded gchemol-core v0.1.7 [INFO] [stderr] Downloaded grep-printer v0.1.7 [INFO] [stderr] Downloaded grep-searcher v0.1.14 [INFO] [stderr] Downloaded gchemol-neighbors v0.1.3 [INFO] [stderr] Downloaded roxmltree v0.18.1 [INFO] [stderr] Downloaded gchemol-graph v0.1.6 [INFO] [stderr] Downloaded gchemol-lattice v0.1.2 [INFO] [stderr] Downloaded sigchld v0.2.3 [INFO] [stderr] Downloaded shared_child v1.1.0 [INFO] [stderr] Downloaded duct v0.13.7 [INFO] [stderr] Downloaded grep-matcher v0.1.7 [INFO] [stderr] Downloaded grep v0.2.13 [INFO] [stderr] Downloaded vecfx v0.1.6 [INFO] [stderr] Downloaded gchemol-gut v0.4.4 [INFO] [stderr] Downloaded octree v0.1.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] b8cc299af763706f10929224cd87a9f0ab20bbd75e0246d2efb7f444be7d8010 [INFO] running `Command { std: "docker" "start" "-a" "b8cc299af763706f10929224cd87a9f0ab20bbd75e0246d2efb7f444be7d8010", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "b8cc299af763706f10929224cd87a9f0ab20bbd75e0246d2efb7f444be7d8010", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b8cc299af763706f10929224cd87a9f0ab20bbd75e0246d2efb7f444be7d8010", kill_on_drop: false }` [INFO] [stdout] b8cc299af763706f10929224cd87a9f0ab20bbd75e0246d2efb7f444be7d8010 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 677eeb788ffa7d9a17b2d32a8ac0fb1ce7546f5afc1128cb05536364ff0a64df [INFO] running `Command { std: "docker" "start" "-a" "677eeb788ffa7d9a17b2d32a8ac0fb1ce7546f5afc1128cb05536364ff0a64df", kill_on_drop: false }` [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling libm v0.2.15 [INFO] [stderr] Compiling memchr v2.7.5 [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling termcolor v1.4.1 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling zerocopy v0.8.26 [INFO] [stderr] Compiling thiserror v2.0.12 [INFO] [stderr] Compiling syn v2.0.104 [INFO] [stderr] Compiling signal-hook v0.3.18 [INFO] [stderr] Compiling utf8parse v0.2.2 [INFO] [stderr] Compiling bitflags v2.9.1 [INFO] [stderr] Compiling bytemuck v1.23.1 [INFO] [stderr] Compiling os_pipe v1.2.2 [INFO] [stderr] Compiling anstyle-parse v0.2.7 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling encoding_rs v0.8.35 [INFO] [stderr] Compiling grep-matcher v0.1.7 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling anstyle-query v1.1.3 [INFO] [stderr] Compiling winnow v0.5.40 [INFO] [stderr] Compiling colorchoice v1.0.4 [INFO] [stderr] Compiling anstyle v1.0.11 [INFO] [stderr] Compiling rustix v1.0.7 [INFO] [stderr] Compiling siphasher v1.0.1 [INFO] [stderr] Compiling is_terminal_polyfill v1.70.1 [INFO] [stderr] Compiling anstream v0.6.19 [INFO] [stderr] Compiling wide v0.7.33 [INFO] [stderr] Compiling phf_shared v0.11.3 [INFO] [stderr] Compiling crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling sigchld v0.2.3 [INFO] [stderr] Compiling memmap2 v0.9.5 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Compiling clap_lex v0.7.5 [INFO] [stderr] Compiling crossbeam-deque v0.8.6 [INFO] [stderr] Compiling encoding_rs_io v0.1.7 [INFO] [stderr] Compiling clap_builder v4.5.40 [INFO] [stderr] Compiling shared_child v1.1.0 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling is-terminal v0.4.16 [INFO] [stderr] Compiling time v0.3.41 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling duct v0.13.7 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling ppv-lite86 v0.2.21 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling ucd-trie v0.1.7 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling shell-escape v0.1.5 [INFO] [stderr] Compiling tempfile v3.20.0 [INFO] [stderr] Compiling phf v0.11.3 [INFO] [stderr] Compiling indexmap v1.9.3 [INFO] [stderr] Compiling unic-char-range v0.9.0 [INFO] [stderr] Compiling unic-common v0.9.0 [INFO] [stderr] Compiling unic-ucd-version v0.9.0 [INFO] [stderr] Compiling unic-char-property v0.9.0 [INFO] [stderr] Compiling base64 v0.20.0 [INFO] [stderr] Compiling hashbrown v0.12.3 [INFO] [stderr] Compiling chrono v0.4.41 [INFO] [stderr] Compiling unic-ucd-segment v0.9.0 [INFO] [stderr] Compiling str_indices v0.4.4 [INFO] [stderr] Compiling deunicode v1.6.2 [INFO] [stderr] Compiling ropey v1.6.1 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling slug v0.1.6 [INFO] [stderr] Compiling humansize v2.1.3 [INFO] [stderr] Compiling unic-segment v0.9.0 [INFO] [stderr] Compiling quick-error v2.0.1 [INFO] [stderr] Compiling xmlparser v0.13.6 [INFO] [stderr] Compiling roxmltree v0.18.1 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling parse-zoneinfo v0.3.1 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Compiling clap_derive v4.5.40 [INFO] [stderr] Compiling bstr v1.12.0 [INFO] [stderr] Compiling lazy-regex-proc_macros v2.4.1 [INFO] [stderr] Compiling env_logger v0.10.2 [INFO] [stderr] Compiling pest v2.8.1 [INFO] [stderr] Compiling globset v0.4.16 [INFO] [stderr] Compiling grep-searcher v0.1.14 [INFO] [stderr] Compiling grep-regex v0.1.13 [INFO] [stderr] Compiling lazy-regex v2.5.0 [INFO] [stderr] Compiling clap v4.5.40 [INFO] [stderr] Compiling grep-cli v0.1.11 [INFO] [stderr] Compiling ignore v0.4.23 [INFO] [stderr] Compiling pest_meta v2.8.1 [INFO] [stderr] Compiling globwalk v0.9.1 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling pest_generator v2.8.1 [INFO] [stderr] Compiling pest_derive v2.8.1 [INFO] [stderr] Compiling serde_json v1.0.140 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling serde_spanned v0.6.9 [INFO] [stderr] Compiling toml_datetime v0.6.11 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling petgraph v0.6.5 [INFO] [stderr] Compiling bimap v0.6.3 [INFO] [stderr] Compiling envy v0.4.2 [INFO] [stderr] Compiling minijinja v1.0.22 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling toml_edit v0.19.15 [INFO] [stderr] Compiling simba v0.7.3 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling grep-printer v0.2.2 [INFO] [stderr] Compiling grep-printer v0.1.7 [INFO] [stderr] Compiling handlebars v4.0.1 [INFO] [stderr] Compiling ordered-float v3.9.2 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling grep v0.2.13 [INFO] [stderr] Compiling phf_generator v0.11.3 [INFO] [stderr] Compiling phf_codegen v0.11.3 [INFO] [stderr] Compiling chrono-tz-build v0.3.0 [INFO] [stderr] Compiling grep v0.3.2 [INFO] [stderr] Compiling grep-reader v0.1.3 [INFO] [stderr] Compiling extxyz v0.2.0 [INFO] [stderr] Compiling gchemol-graph v0.1.6 [INFO] [stderr] Compiling chrono-tz v0.9.0 [INFO] [stderr] Compiling toml v0.7.8 [INFO] [stderr] Compiling gchemol-gut v0.4.4 [INFO] [stderr] Compiling gchemol-parser v0.4.6 [INFO] [stderr] Compiling nalgebra v0.31.4 [INFO] [stderr] Compiling tera v1.20.0 [INFO] [stderr] Compiling vecfx v0.1.6 [INFO] [stderr] Compiling gchemol-lattice v0.1.2 [INFO] [stderr] Compiling octree v0.1.0 [INFO] [stderr] Compiling gchemol-geometry v0.1.1 [INFO] [stderr] Compiling gchemol-neighbors v0.1.3 [INFO] [stderr] Compiling gchemol-core v0.1.7 [INFO] [stderr] Compiling gchemol-readwrite v0.1.11 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `PathBuf` [INFO] [stdout] --> src/template/jinja.rs:3:23 [INFO] [stdout] | [INFO] [stdout] 3 | use std::path::{Path, PathBuf}; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `gchemol_core::Atom::label`: use get_label instead [INFO] [stdout] --> src/formats/mol2.rs:113:18 [INFO] [stdout] | [INFO] [stdout] 113 | name = a.label(), [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `gchemol_core::Atom::label`: use get_label instead [INFO] [stdout] --> src/formats/pdb.rs:150:16 [INFO] [stdout] | [INFO] [stdout] 150 | name=a.label(), [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `rc` [INFO] [stdout] --> src/template/hbs.rs:19:5 [INFO] [stdout] | [INFO] [stdout] 19 | rc: &mut RenderContext, [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_rc` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/template/jinja.rs:126:9 [INFO] [stdout] | [INFO] [stdout] 126 | let mut env = Environment::new(); [INFO] [stdout] | ----^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: static `GLOBAL_REX` is never used [INFO] [stdout] --> src/template/jinja.rs:11:8 [INFO] [stdout] | [INFO] [stdout] 11 | static GLOBAL_REX: Lazy = lazy_regex!("^ab+$"i); [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `render` is never used [INFO] [stdout] --> src/template/jinja.rs:125:8 [INFO] [stdout] | [INFO] [stdout] 125 | pub fn render(json_source: &str, template: &str) -> Result { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 58.91s [INFO] running `Command { std: "docker" "inspect" "677eeb788ffa7d9a17b2d32a8ac0fb1ce7546f5afc1128cb05536364ff0a64df", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "677eeb788ffa7d9a17b2d32a8ac0fb1ce7546f5afc1128cb05536364ff0a64df", kill_on_drop: false }` [INFO] [stdout] 677eeb788ffa7d9a17b2d32a8ac0fb1ce7546f5afc1128cb05536364ff0a64df [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] ae1c658f05b08e0174822cc5f34717af6732f6d4f682955204f4f27a6aa0a488 [INFO] running `Command { std: "docker" "start" "-a" "ae1c658f05b08e0174822cc5f34717af6732f6d4f682955204f4f27a6aa0a488", kill_on_drop: false }` [INFO] [stderr] Compiling gchemol-readwrite v0.1.11 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `PathBuf` [INFO] [stdout] --> src/template/jinja.rs:3:23 [INFO] [stdout] | [INFO] [stdout] 3 | use std::path::{Path, PathBuf}; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `gchemol_core::Atom::label`: use get_label instead [INFO] [stdout] --> src/formats/mol2.rs:113:18 [INFO] [stdout] | [INFO] [stdout] 113 | name = a.label(), [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `gchemol_core::Atom::label`: use get_label instead [INFO] [stdout] --> src/formats/pdb.rs:150:16 [INFO] [stdout] | [INFO] [stdout] 150 | name=a.label(), [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `rc` [INFO] [stdout] --> src/template/hbs.rs:19:5 [INFO] [stdout] | [INFO] [stdout] 19 | rc: &mut RenderContext, [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_rc` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/template/jinja.rs:126:9 [INFO] [stdout] | [INFO] [stdout] 126 | let mut env = Environment::new(); [INFO] [stdout] | ----^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: static `GLOBAL_REX` is never used [INFO] [stdout] --> src/template/jinja.rs:11:8 [INFO] [stdout] | [INFO] [stdout] 11 | static GLOBAL_REX: Lazy = lazy_regex!("^ab+$"i); [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `render` is never used [INFO] [stdout] --> src/template/jinja.rs:125:8 [INFO] [stdout] | [INFO] [stdout] 125 | pub fn render(json_source: &str, template: &str) -> Result { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `gchemol_core::Molecule` [INFO] [stdout] --> tests/gaussian.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use gchemol_core::Molecule; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `gchemol_readwrite::prelude::*` [INFO] [stdout] --> tests/gaussian.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use gchemol_readwrite::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `gchemol_readwrite::read_all` [INFO] [stdout] --> tests/xsd.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use gchemol_readwrite::read_all; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `gchemol_readwrite::prelude::*` [INFO] [stdout] --> tests/mol2.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use gchemol_readwrite::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `gchemol_readwrite::read_all` [INFO] [stdout] --> tests/template.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use gchemol_readwrite::read_all; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `gchemol_core::Molecule` [INFO] [stdout] --> tests/sdf.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use gchemol_core::Molecule; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `gchemol_readwrite::prelude::*` [INFO] [stdout] --> tests/sdf.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use gchemol_readwrite::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `gchemol_readwrite::read_all` [INFO] [stdout] --> tests/basic.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use gchemol_readwrite::read_all; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `gchemol_core::Molecule` [INFO] [stdout] --> tests/pxyz.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use gchemol_core::Molecule; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `gchemol_readwrite::read_all` [INFO] [stdout] --> tests/cml.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use gchemol_readwrite::read_all; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `gchemol_readwrite::prelude::*` [INFO] [stdout] --> tests/pxyz.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use gchemol_readwrite::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `gchemol_core::Molecule` [INFO] [stdout] --> tests/cif.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use gchemol_core::Molecule; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `gchemol_readwrite::prelude::*` [INFO] [stdout] --> tests/cif.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use gchemol_readwrite::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `gchemol_core::Molecule` [INFO] [stdout] --> tests/pdb.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use gchemol_core::Molecule; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `gchemol_readwrite::prelude::*` [INFO] [stdout] --> tests/pdb.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use gchemol_readwrite::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `gchemol_readwrite::read_all` [INFO] [stdout] --> tests/cjson.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use gchemol_readwrite::read_all; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `gchemol_core::Molecule` [INFO] [stdout] --> tests/vasp.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use gchemol_core::Molecule; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `gchemol_readwrite::prelude::*` [INFO] [stdout] --> tests/vasp.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use gchemol_readwrite::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `gut::prelude` [INFO] [stdout] --> tests/cif.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use gut::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `PathBuf` [INFO] [stdout] --> src/template/jinja.rs:3:23 [INFO] [stdout] | [INFO] [stdout] 3 | use std::path::{Path, PathBuf}; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `gchemol_core::Atom::label`: use get_label instead [INFO] [stdout] --> src/formats/mol2.rs:113:18 [INFO] [stdout] | [INFO] [stdout] 113 | name = a.label(), [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `gchemol_core::Atom::label`: use get_label instead [INFO] [stdout] --> src/formats/pdb.rs:150:16 [INFO] [stdout] | [INFO] [stdout] 150 | name=a.label(), [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `gchemol-readwrite` (test "mol2"); 1 warning emitted [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/bin/rustc --crate-name mol2 --edition=2021 tests/mol2.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --emit=dep-info,link -C embed-bitcode=no -C debuginfo=2 --test --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("adhoc"))' -C metadata=3876d142ed8a84a5 -C extra-filename=-a9439cdab848db76 --out-dir /opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps --target x86_64-unknown-linux-musl -L dependency=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern extxyz=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libextxyz-1db70b3ec8070db1.rlib --extern gchemol_core=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libgchemol_core-93b800d924cf9a94.rlib --extern gut=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libgchemol_gut-fce0ed17f552e019.rlib --extern gchemol_parser=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libgchemol_parser-204ff9ae33ba0ac7.rlib --extern gchemol_readwrite=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libgchemol_readwrite-156b8aac511d3776.rlib --extern handlebars=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libhandlebars-77b6e9c7ca092363.rlib --extern indexmap=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libindexmap-420bad1e15908d04.rlib --extern lazy_regex=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/liblazy_regex-4cb112b12b8a37e7.rlib --extern minijinja=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libminijinja-19e04c9635cffe80.rlib --extern regex=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libregex-f1a8c952e58c26b4.rlib --extern roxmltree=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libroxmltree-60cea30aa22a98e3.rlib --extern serde=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libserde-2a85ca2d38138cc9.rlib --extern serde_json=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libserde_json-d232852cb6de6df7.rlib --extern tempfile=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libtempfile-5ad95837d081aa3d.rlib --extern tera=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libtera-54d4da775b4975fa.rlib --extern vecfx=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libvecfx-4dedf437f82d1244.rlib --extern walkdir=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libwalkdir-a6384958eaeb735e.rlib --cap-lints=forbid` (signal: 9, SIGKILL: kill) [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: could not compile `gchemol-readwrite` (test "basic"); 1 warning emitted [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/bin/rustc --crate-name basic --edition=2021 tests/basic.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --emit=dep-info,link -C embed-bitcode=no -C debuginfo=2 --test --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("adhoc"))' -C metadata=c489e29bed419858 -C extra-filename=-ef30c9cbfc36430f --out-dir /opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps --target x86_64-unknown-linux-musl -L dependency=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern extxyz=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libextxyz-1db70b3ec8070db1.rlib --extern gchemol_core=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libgchemol_core-93b800d924cf9a94.rlib --extern gut=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libgchemol_gut-fce0ed17f552e019.rlib --extern gchemol_parser=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libgchemol_parser-204ff9ae33ba0ac7.rlib --extern gchemol_readwrite=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libgchemol_readwrite-156b8aac511d3776.rlib --extern handlebars=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libhandlebars-77b6e9c7ca092363.rlib --extern indexmap=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libindexmap-420bad1e15908d04.rlib --extern lazy_regex=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/liblazy_regex-4cb112b12b8a37e7.rlib --extern minijinja=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libminijinja-19e04c9635cffe80.rlib --extern regex=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libregex-f1a8c952e58c26b4.rlib --extern roxmltree=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libroxmltree-60cea30aa22a98e3.rlib --extern serde=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libserde-2a85ca2d38138cc9.rlib --extern serde_json=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libserde_json-d232852cb6de6df7.rlib --extern tempfile=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libtempfile-5ad95837d081aa3d.rlib --extern tera=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libtera-54d4da775b4975fa.rlib --extern vecfx=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libvecfx-4dedf437f82d1244.rlib --extern walkdir=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libwalkdir-a6384958eaeb735e.rlib --cap-lints=forbid` (signal: 9, SIGKILL: kill) [INFO] [stderr] error: could not compile `gchemol-readwrite` (lib test); 3 warnings emitted [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/bin/rustc --crate-name gchemol_readwrite --edition=2021 src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --emit=dep-info,link -C embed-bitcode=no -C debuginfo=2 --test --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("adhoc"))' -C metadata=b31acbe8f457912c -C extra-filename=-b8a44f6e3259ff66 --out-dir /opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps --target x86_64-unknown-linux-musl -L dependency=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern extxyz=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libextxyz-1db70b3ec8070db1.rlib --extern gchemol_core=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libgchemol_core-93b800d924cf9a94.rlib --extern gut=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libgchemol_gut-fce0ed17f552e019.rlib --extern gchemol_parser=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libgchemol_parser-204ff9ae33ba0ac7.rlib --extern handlebars=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libhandlebars-77b6e9c7ca092363.rlib --extern indexmap=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libindexmap-420bad1e15908d04.rlib --extern lazy_regex=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/liblazy_regex-4cb112b12b8a37e7.rlib --extern minijinja=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libminijinja-19e04c9635cffe80.rlib --extern regex=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libregex-f1a8c952e58c26b4.rlib --extern roxmltree=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libroxmltree-60cea30aa22a98e3.rlib --extern serde=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libserde-2a85ca2d38138cc9.rlib --extern serde_json=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libserde_json-d232852cb6de6df7.rlib --extern tempfile=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libtempfile-5ad95837d081aa3d.rlib --extern tera=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libtera-54d4da775b4975fa.rlib --extern vecfx=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libvecfx-4dedf437f82d1244.rlib --extern walkdir=/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libwalkdir-a6384958eaeb735e.rlib --cap-lints=forbid` (signal: 9, SIGKILL: kill) [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/rcrt1.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crti.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtbeginS.o" "/tmp/rustcObZ0Cd/symbols.o" "<5 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libtest-*,libgetopts-*,libunicode_width-*,librustc_std_workspace_std-*}.rlib" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/{libgchemol_readwrite-156b8aac511d3776.rlib,libtera-54d4da775b4975fa.rlib,libslug-5782727555649698.rlib,libdeunicode-10e575d217d37a7d.rlib,libglobwalk-1cc1fd5b76967449.rlib,libignore-f301b31df6dc8ca9.rlib,libpercent_encoding-4808a78ba306dff8.rlib,libunic_segment-06830b2ed2ab8a98.rlib,libunic_ucd_segment-736607a6993d4bda.rlib,libunic_ucd_version-014ef47f161018ba.rlib,libunic_common-be5fc0f13f0000c6.rlib,libunic_char_property-fd2cf69e511793c8.rlib,libunic_char_range-1020285835010649.rlib,libhumansize-f48020a35cdfc32d.rlib,liblibm-c75a9b355d312f74.rlib,libchrono_tz-019bc8fae44afd4a.rlib,libphf-1764104349cf206b.rlib,libphf_shared-1c475433e6cab9fe.rlib,libsiphasher-a16aec30ce993c09.rlib,libchrono-6ea74727d035c92d.rlib,libiana_time_zone-bcdbc0f1f6b78de9.rlib,liblazy_regex-4cb112b12b8a37e7.rlib,libminijinja-19e04c9635cffe80.rlib,libhandlebars-77b6e9c7ca092363.rlib,libpest-222bf09a96cd3f39.rlib,libucd_trie-a31d05edd9cdb7bb.rlib,libthiserror-e00313c4c27905ba.rlib,libquick_error-bd2a7215cf93a039.rlib,libwalkdir-a6384958eaeb735e.rlib,libsame_file-ebfa63be59ead6ba.rlib,libgchemol_parser-204ff9ae33ba0ac7.rlib,libropey-b08bcf2a3b7eeb9f.rlib,libstr_indices-f21216268702a6f1.rlib,libsmallvec-f31619fc744d118e.rlib,libgrep-6601b483078a7c93.rlib,libgrep_regex-05ac667c820a69d1.rlib,libgrep_printer-656fc94af67d8b97.rlib,libbase64-0d2f1ec8ddb3f3f7.rlib,libgrep_searcher-5a0c227e9bf499be.rlib,libmemmap2-6e4d96052745fed8.rlib,libencoding_rs_io-129b809b8cd0a9f1.rlib,libencoding_rs-8097bd3694a71b8a.rlib,libgrep_matcher-94ca3c34f882f978.rlib,libgrep_cli-8a8c38aaee5a4000.rlib,libglobset-901f4fcf2c24d866.rlib,libbstr-3136c71fb0a216a4.rlib,libnom-dbba1b7928beca6d.rlib,libroxmltree-60cea30aa22a98e3.rlib,libxmlparser-1fbb74b352b4390e.rlib,libgchemol_core-93b800d924cf9a94.rlib,libenvy-6a16cdf277ca197a.rlib,libgchemol_neighbors-24dcf1c7e45466ce.rlib,liboctree-70ab2ce8162e890f.rlib,libindexmap-420bad1e15908d04.rlib,libhashbrown-94464ed281767ecc.rlib,libgchemol_geometry-5fc3de8e149ec466.rlib,librand_distr-adbd4db336849c6b.rlib,libbimap-c6ddbfece654155f.rlib,libgchemol_graph-042cba46b4efc5bd.rlib,libpetgraph-464833cadc250a6a.rlib,libfixedbitset-1705868b844c01b6.rlib,libgchemol_lattice-ece9b8ca96b6e0f7.rlib,libvecfx-4dedf437f82d1244.rlib,libordered_float-30918688b4cbc3a7.rlib,librand-3e5f111977445375.rlib,librand_chacha-5c05a5a26b1b1e70.rlib,libppv_lite86-989f981f78363571.rlib,libzerocopy-cb6604b278eb5d7e.rlib,librand_core-f6b9e65875633794.rlib,libgetrandom-2154da958851ecab.rlib,libnalgebra-aeb4829ceb72e1c6.rlib,libmatrixmultiply-e79b25aad610eb01.rlib,librawpointer-ee8696fe85e6dce4.rlib,libnum_rational-ca96b21c534d9c1b.rlib,libnum_integer-4ea01382d17a6cf6.rlib,libtypenum-946f014670f06d4a.rlib,libsimba-c778a09808f86c6b.rlib,libwide-19c4f86ae5dde2a2.rlib,libsafe_arch-3a24e57fde58a11a.rlib,libbytemuck-faa4676845bde000.rlib,libnum_complex-0a4934f058e1e1d9.rlib,libapprox-c62ece22be6e946d.rlib,libnum_traits-8b7c1d57da1718a6.rlib,libgchemol_gut-fce0ed17f552e019.rlib,libenv_logger-c48bc6c8fdd67e4d.rlib,libtermcolor-d92989218eee0326.rlib,libis_terminal-4d2d8eb84412c6f1.rlib,libhumantime-efb172a074f5bc89.rlib,libregex-f1a8c952e58c26b4.rlib,libregex_automata-8233902ecbe60afb.rlib,libaho_corasick-01303506f133d477.rlib,libregex_syntax-68ebd4ae9920c658.rlib,libtoml-7bd3da3052fe6832.rlib,libtoml_edit-3a40ffa452f70ec5.rlib,libserde_spanned-acedb104fa4b9447.rlib,libindexmap-fe91f3563e4dbaa4.rlib,libequivalent-c8ca4e154c540f6d.rlib,libhashbrown-217b7fa321d8dcb2.rlib,libwinnow-dd5aee8edb345c71.rlib,libtoml_datetime-ed65ac691b6834b9.rlib,libserde_json-d232852cb6de6df7.rlib,libmemchr-1aee4b866184c097.rlib,libitoa-ffb801c715a80a64.rlib,libryu-0a228f54b75663b5.rlib,libshell_escape-9c90764a101dd1a4.rlib,librayon-ad3c253249f60ca3.rlib,librayon_core-aa1ba359694adbc7.rlib,libcrossbeam_deque-7b1467e9406bcce1.rlib,libcrossbeam_epoch-7f2a1972b1339e08.rlib,libcrossbeam_utils-fb48174d8dac237b.rlib,liblog-7ed48074b9f3458e.rlib,libserde-2a85ca2d38138cc9.rlib,libitertools-87e61bebde2c34d8.rlib,libeither-da399c10ae937dac.rlib,libtime-94a2b7885563f8c1.rlib,libtime_core-5c207284db4e644c.rlib,libnum_conv-68ee3baea9d5f7f0.rlib,libderanged-caff22297a1c1234.rlib,libpowerfmt-4284c813f4b9cffc.rlib,liblazy_static-f3dc5c13b01a78ba.rlib,libtempfile-5ad95837d081aa3d.rlib,libgetrandom-f3c9250cc9b7c22f.rlib,libcfg_if-bfc6e2941b0f95e3.rlib,libfastrand-73632d5ce9fbbad9.rlib,librustix-77182ab78b026e4d.rlib,libbitflags-a339c845664ed1d6.rlib,liblinux_raw_sys-6a5ba6409b7a32a6.rlib,libanyhow-ba8dd496d0f3cbcd.rlib,libduct-c3481acf1b47d8aa.rlib,libshared_child-3ee1047bbfe72461.rlib,libsigchld-54b0325f10fc3584.rlib,libsignal_hook-8e631ffc4290105f.rlib,libsignal_hook_registry-f9fd0c6140c684af.rlib,libos_pipe-08e9742d4180c050.rlib,libonce_cell-9f23038a26dfc6d0.rlib,liblibc-8e354d7ef70926da.rlib,libclap-d94c8956e52ef186.rlib,libclap_builder-14598cc99d36f54f.rlib,libstrsim-e5a1ceb0bdbece3f.rlib,libanstream-498c41292703e3d7.rlib,libanstyle_query-4581b2ccffd33313.rlib,libis_terminal_polyfill-67333c1fd864e7ce.rlib,libcolorchoice-ac2a630b952dcf8e.rlib,libanstyle_parse-138e9e1ea51d32a3.rlib,libutf8parse-566e819dd32c0a03.rlib,libclap_lex-f9d0b9ae25e6f22b.rlib,libanstyle-fcc5c3f0dc5a830d.rlib}.rlib" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*}.rlib" "-lunwind" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libcfg_if-*,liblibc-*}.rlib" "-lc" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-L" "/tmp/rustcObZ0Cd/raw-dylibs" "-Wl,-Bdynamic" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-nostartfiles" "-L" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained" "-L" "/lib/rustlib/x86_64-unknown-linux-musl/lib" "-o" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/vasp-4987de651fc2d027" "-Wl,--gc-sections" "-static-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtendS.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtn.o" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `gchemol-readwrite` (test "vasp") due to 1 previous error; 2 warnings emitted [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/rcrt1.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crti.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtbeginS.o" "/tmp/rustccc1KAn/symbols.o" "<3 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libtest-*,libgetopts-*,libunicode_width-*,librustc_std_workspace_std-*}.rlib" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/{libgchemol_readwrite-156b8aac511d3776.rlib,libtera-54d4da775b4975fa.rlib,libslug-5782727555649698.rlib,libdeunicode-10e575d217d37a7d.rlib,libglobwalk-1cc1fd5b76967449.rlib,libignore-f301b31df6dc8ca9.rlib,libpercent_encoding-4808a78ba306dff8.rlib,libunic_segment-06830b2ed2ab8a98.rlib,libunic_ucd_segment-736607a6993d4bda.rlib,libunic_ucd_version-014ef47f161018ba.rlib,libunic_common-be5fc0f13f0000c6.rlib,libunic_char_property-fd2cf69e511793c8.rlib,libunic_char_range-1020285835010649.rlib,libhumansize-f48020a35cdfc32d.rlib,liblibm-c75a9b355d312f74.rlib,libchrono_tz-019bc8fae44afd4a.rlib,libphf-1764104349cf206b.rlib,libphf_shared-1c475433e6cab9fe.rlib,libsiphasher-a16aec30ce993c09.rlib,libchrono-6ea74727d035c92d.rlib,libiana_time_zone-bcdbc0f1f6b78de9.rlib,liblazy_regex-4cb112b12b8a37e7.rlib,libminijinja-19e04c9635cffe80.rlib,libhandlebars-77b6e9c7ca092363.rlib,libpest-222bf09a96cd3f39.rlib,libucd_trie-a31d05edd9cdb7bb.rlib,libthiserror-e00313c4c27905ba.rlib,libquick_error-bd2a7215cf93a039.rlib,libwalkdir-a6384958eaeb735e.rlib,libsame_file-ebfa63be59ead6ba.rlib,libgchemol_parser-204ff9ae33ba0ac7.rlib,libropey-b08bcf2a3b7eeb9f.rlib,libstr_indices-f21216268702a6f1.rlib,libsmallvec-f31619fc744d118e.rlib,libgrep-6601b483078a7c93.rlib,libgrep_regex-05ac667c820a69d1.rlib,libgrep_printer-656fc94af67d8b97.rlib,libbase64-0d2f1ec8ddb3f3f7.rlib,libgrep_searcher-5a0c227e9bf499be.rlib,libmemmap2-6e4d96052745fed8.rlib,libencoding_rs_io-129b809b8cd0a9f1.rlib,libencoding_rs-8097bd3694a71b8a.rlib,libgrep_matcher-94ca3c34f882f978.rlib,libgrep_cli-8a8c38aaee5a4000.rlib,libglobset-901f4fcf2c24d866.rlib,libbstr-3136c71fb0a216a4.rlib,libnom-dbba1b7928beca6d.rlib,libroxmltree-60cea30aa22a98e3.rlib,libxmlparser-1fbb74b352b4390e.rlib,libgchemol_core-93b800d924cf9a94.rlib,libenvy-6a16cdf277ca197a.rlib,libgchemol_neighbors-24dcf1c7e45466ce.rlib,liboctree-70ab2ce8162e890f.rlib,libindexmap-420bad1e15908d04.rlib,libhashbrown-94464ed281767ecc.rlib,libgchemol_geometry-5fc3de8e149ec466.rlib,librand_distr-adbd4db336849c6b.rlib,libbimap-c6ddbfece654155f.rlib,libgchemol_graph-042cba46b4efc5bd.rlib,libpetgraph-464833cadc250a6a.rlib,libfixedbitset-1705868b844c01b6.rlib,libgchemol_lattice-ece9b8ca96b6e0f7.rlib,libvecfx-4dedf437f82d1244.rlib,libordered_float-30918688b4cbc3a7.rlib,librand-3e5f111977445375.rlib,librand_chacha-5c05a5a26b1b1e70.rlib,libppv_lite86-989f981f78363571.rlib,libzerocopy-cb6604b278eb5d7e.rlib,librand_core-f6b9e65875633794.rlib,libgetrandom-2154da958851ecab.rlib,libnalgebra-aeb4829ceb72e1c6.rlib,libmatrixmultiply-e79b25aad610eb01.rlib,librawpointer-ee8696fe85e6dce4.rlib,libnum_rational-ca96b21c534d9c1b.rlib,libnum_integer-4ea01382d17a6cf6.rlib,libtypenum-946f014670f06d4a.rlib,libsimba-c778a09808f86c6b.rlib,libwide-19c4f86ae5dde2a2.rlib,libsafe_arch-3a24e57fde58a11a.rlib,libbytemuck-faa4676845bde000.rlib,libnum_complex-0a4934f058e1e1d9.rlib,libapprox-c62ece22be6e946d.rlib,libnum_traits-8b7c1d57da1718a6.rlib,libgchemol_gut-fce0ed17f552e019.rlib,libenv_logger-c48bc6c8fdd67e4d.rlib,libtermcolor-d92989218eee0326.rlib,libis_terminal-4d2d8eb84412c6f1.rlib,libhumantime-efb172a074f5bc89.rlib,libregex-f1a8c952e58c26b4.rlib,libregex_automata-8233902ecbe60afb.rlib,libaho_corasick-01303506f133d477.rlib,libregex_syntax-68ebd4ae9920c658.rlib,libtoml-7bd3da3052fe6832.rlib,libtoml_edit-3a40ffa452f70ec5.rlib,libserde_spanned-acedb104fa4b9447.rlib,libindexmap-fe91f3563e4dbaa4.rlib,libequivalent-c8ca4e154c540f6d.rlib,libhashbrown-217b7fa321d8dcb2.rlib,libwinnow-dd5aee8edb345c71.rlib,libtoml_datetime-ed65ac691b6834b9.rlib,libserde_json-d232852cb6de6df7.rlib,libmemchr-1aee4b866184c097.rlib,libitoa-ffb801c715a80a64.rlib,libryu-0a228f54b75663b5.rlib,libshell_escape-9c90764a101dd1a4.rlib,librayon-ad3c253249f60ca3.rlib,librayon_core-aa1ba359694adbc7.rlib,libcrossbeam_deque-7b1467e9406bcce1.rlib,libcrossbeam_epoch-7f2a1972b1339e08.rlib,libcrossbeam_utils-fb48174d8dac237b.rlib,liblog-7ed48074b9f3458e.rlib,libserde-2a85ca2d38138cc9.rlib,libitertools-87e61bebde2c34d8.rlib,libeither-da399c10ae937dac.rlib,libtime-94a2b7885563f8c1.rlib,libtime_core-5c207284db4e644c.rlib,libnum_conv-68ee3baea9d5f7f0.rlib,libderanged-caff22297a1c1234.rlib,libpowerfmt-4284c813f4b9cffc.rlib,liblazy_static-f3dc5c13b01a78ba.rlib,libtempfile-5ad95837d081aa3d.rlib,libgetrandom-f3c9250cc9b7c22f.rlib,libcfg_if-bfc6e2941b0f95e3.rlib,libfastrand-73632d5ce9fbbad9.rlib,librustix-77182ab78b026e4d.rlib,libbitflags-a339c845664ed1d6.rlib,liblinux_raw_sys-6a5ba6409b7a32a6.rlib,libanyhow-ba8dd496d0f3cbcd.rlib,libduct-c3481acf1b47d8aa.rlib,libshared_child-3ee1047bbfe72461.rlib,libsigchld-54b0325f10fc3584.rlib,libsignal_hook-8e631ffc4290105f.rlib,libsignal_hook_registry-f9fd0c6140c684af.rlib,libos_pipe-08e9742d4180c050.rlib,libonce_cell-9f23038a26dfc6d0.rlib,liblibc-8e354d7ef70926da.rlib,libclap-d94c8956e52ef186.rlib,libclap_builder-14598cc99d36f54f.rlib,libstrsim-e5a1ceb0bdbece3f.rlib,libanstream-498c41292703e3d7.rlib,libanstyle_query-4581b2ccffd33313.rlib,libis_terminal_polyfill-67333c1fd864e7ce.rlib,libcolorchoice-ac2a630b952dcf8e.rlib,libanstyle_parse-138e9e1ea51d32a3.rlib,libutf8parse-566e819dd32c0a03.rlib,libclap_lex-f9d0b9ae25e6f22b.rlib,libanstyle-fcc5c3f0dc5a830d.rlib}.rlib" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*}.rlib" "-lunwind" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libcfg_if-*,liblibc-*}.rlib" "-lc" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-L" "/tmp/rustccc1KAn/raw-dylibs" "-Wl,-Bdynamic" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-nostartfiles" "-L" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained" "-L" "/lib/rustlib/x86_64-unknown-linux-musl/lib" "-o" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/cml-b9d83832c92291ac" "-Wl,--gc-sections" "-static-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtendS.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtn.o" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `gchemol-readwrite` (test "cml") due to 1 previous error; 1 warning emitted [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/rcrt1.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crti.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtbeginS.o" "/tmp/rustcFknv1H/symbols.o" "<7 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libtest-*,libgetopts-*,libunicode_width-*,librustc_std_workspace_std-*}.rlib" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/{libgchemol_readwrite-156b8aac511d3776.rlib,libtera-54d4da775b4975fa.rlib,libslug-5782727555649698.rlib,libdeunicode-10e575d217d37a7d.rlib,libglobwalk-1cc1fd5b76967449.rlib,libignore-f301b31df6dc8ca9.rlib,libpercent_encoding-4808a78ba306dff8.rlib,libunic_segment-06830b2ed2ab8a98.rlib,libunic_ucd_segment-736607a6993d4bda.rlib,libunic_ucd_version-014ef47f161018ba.rlib,libunic_common-be5fc0f13f0000c6.rlib,libunic_char_property-fd2cf69e511793c8.rlib,libunic_char_range-1020285835010649.rlib,libhumansize-f48020a35cdfc32d.rlib,liblibm-c75a9b355d312f74.rlib,libchrono_tz-019bc8fae44afd4a.rlib,libphf-1764104349cf206b.rlib,libphf_shared-1c475433e6cab9fe.rlib,libsiphasher-a16aec30ce993c09.rlib,libchrono-6ea74727d035c92d.rlib,libiana_time_zone-bcdbc0f1f6b78de9.rlib,liblazy_regex-4cb112b12b8a37e7.rlib,libminijinja-19e04c9635cffe80.rlib,libhandlebars-77b6e9c7ca092363.rlib,libpest-222bf09a96cd3f39.rlib,libucd_trie-a31d05edd9cdb7bb.rlib,libthiserror-e00313c4c27905ba.rlib,libquick_error-bd2a7215cf93a039.rlib,libwalkdir-a6384958eaeb735e.rlib,libsame_file-ebfa63be59ead6ba.rlib,libgchemol_parser-204ff9ae33ba0ac7.rlib,libropey-b08bcf2a3b7eeb9f.rlib,libstr_indices-f21216268702a6f1.rlib,libsmallvec-f31619fc744d118e.rlib,libgrep-6601b483078a7c93.rlib,libgrep_regex-05ac667c820a69d1.rlib,libgrep_printer-656fc94af67d8b97.rlib,libbase64-0d2f1ec8ddb3f3f7.rlib,libgrep_searcher-5a0c227e9bf499be.rlib,libmemmap2-6e4d96052745fed8.rlib,libencoding_rs_io-129b809b8cd0a9f1.rlib,libencoding_rs-8097bd3694a71b8a.rlib,libgrep_matcher-94ca3c34f882f978.rlib,libgrep_cli-8a8c38aaee5a4000.rlib,libglobset-901f4fcf2c24d866.rlib,libbstr-3136c71fb0a216a4.rlib,libnom-dbba1b7928beca6d.rlib,libroxmltree-60cea30aa22a98e3.rlib,libxmlparser-1fbb74b352b4390e.rlib,libgchemol_core-93b800d924cf9a94.rlib,libenvy-6a16cdf277ca197a.rlib,libgchemol_neighbors-24dcf1c7e45466ce.rlib,liboctree-70ab2ce8162e890f.rlib,libindexmap-420bad1e15908d04.rlib,libhashbrown-94464ed281767ecc.rlib,libgchemol_geometry-5fc3de8e149ec466.rlib,librand_distr-adbd4db336849c6b.rlib,libbimap-c6ddbfece654155f.rlib,libgchemol_graph-042cba46b4efc5bd.rlib,libpetgraph-464833cadc250a6a.rlib,libfixedbitset-1705868b844c01b6.rlib,libgchemol_lattice-ece9b8ca96b6e0f7.rlib,libvecfx-4dedf437f82d1244.rlib,libordered_float-30918688b4cbc3a7.rlib,librand-3e5f111977445375.rlib,librand_chacha-5c05a5a26b1b1e70.rlib,libppv_lite86-989f981f78363571.rlib,libzerocopy-cb6604b278eb5d7e.rlib,librand_core-f6b9e65875633794.rlib,libgetrandom-2154da958851ecab.rlib,libnalgebra-aeb4829ceb72e1c6.rlib,libmatrixmultiply-e79b25aad610eb01.rlib,librawpointer-ee8696fe85e6dce4.rlib,libnum_rational-ca96b21c534d9c1b.rlib,libnum_integer-4ea01382d17a6cf6.rlib,libtypenum-946f014670f06d4a.rlib,libsimba-c778a09808f86c6b.rlib,libwide-19c4f86ae5dde2a2.rlib,libsafe_arch-3a24e57fde58a11a.rlib,libbytemuck-faa4676845bde000.rlib,libnum_complex-0a4934f058e1e1d9.rlib,libapprox-c62ece22be6e946d.rlib,libnum_traits-8b7c1d57da1718a6.rlib,libgchemol_gut-fce0ed17f552e019.rlib,libenv_logger-c48bc6c8fdd67e4d.rlib,libtermcolor-d92989218eee0326.rlib,libis_terminal-4d2d8eb84412c6f1.rlib,libhumantime-efb172a074f5bc89.rlib,libregex-f1a8c952e58c26b4.rlib,libregex_automata-8233902ecbe60afb.rlib,libaho_corasick-01303506f133d477.rlib,libregex_syntax-68ebd4ae9920c658.rlib,libtoml-7bd3da3052fe6832.rlib,libtoml_edit-3a40ffa452f70ec5.rlib,libserde_spanned-acedb104fa4b9447.rlib,libindexmap-fe91f3563e4dbaa4.rlib,libequivalent-c8ca4e154c540f6d.rlib,libhashbrown-217b7fa321d8dcb2.rlib,libwinnow-dd5aee8edb345c71.rlib,libtoml_datetime-ed65ac691b6834b9.rlib,libserde_json-d232852cb6de6df7.rlib,libmemchr-1aee4b866184c097.rlib,libitoa-ffb801c715a80a64.rlib,libryu-0a228f54b75663b5.rlib,libshell_escape-9c90764a101dd1a4.rlib,librayon-ad3c253249f60ca3.rlib,librayon_core-aa1ba359694adbc7.rlib,libcrossbeam_deque-7b1467e9406bcce1.rlib,libcrossbeam_epoch-7f2a1972b1339e08.rlib,libcrossbeam_utils-fb48174d8dac237b.rlib,liblog-7ed48074b9f3458e.rlib,libserde-2a85ca2d38138cc9.rlib,libitertools-87e61bebde2c34d8.rlib,libeither-da399c10ae937dac.rlib,libtime-94a2b7885563f8c1.rlib,libtime_core-5c207284db4e644c.rlib,libnum_conv-68ee3baea9d5f7f0.rlib,libderanged-caff22297a1c1234.rlib,libpowerfmt-4284c813f4b9cffc.rlib,liblazy_static-f3dc5c13b01a78ba.rlib,libtempfile-5ad95837d081aa3d.rlib,libgetrandom-f3c9250cc9b7c22f.rlib,libcfg_if-bfc6e2941b0f95e3.rlib,libfastrand-73632d5ce9fbbad9.rlib,librustix-77182ab78b026e4d.rlib,libbitflags-a339c845664ed1d6.rlib,liblinux_raw_sys-6a5ba6409b7a32a6.rlib,libanyhow-ba8dd496d0f3cbcd.rlib,libduct-c3481acf1b47d8aa.rlib,libshared_child-3ee1047bbfe72461.rlib,libsigchld-54b0325f10fc3584.rlib,libsignal_hook-8e631ffc4290105f.rlib,libsignal_hook_registry-f9fd0c6140c684af.rlib,libos_pipe-08e9742d4180c050.rlib,libonce_cell-9f23038a26dfc6d0.rlib,liblibc-8e354d7ef70926da.rlib,libclap-d94c8956e52ef186.rlib,libclap_builder-14598cc99d36f54f.rlib,libstrsim-e5a1ceb0bdbece3f.rlib,libanstream-498c41292703e3d7.rlib,libanstyle_query-4581b2ccffd33313.rlib,libis_terminal_polyfill-67333c1fd864e7ce.rlib,libcolorchoice-ac2a630b952dcf8e.rlib,libanstyle_parse-138e9e1ea51d32a3.rlib,libutf8parse-566e819dd32c0a03.rlib,libclap_lex-f9d0b9ae25e6f22b.rlib,libanstyle-fcc5c3f0dc5a830d.rlib}.rlib" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*}.rlib" "-lunwind" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libcfg_if-*,liblibc-*}.rlib" "-lc" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-L" "/tmp/rustcFknv1H/raw-dylibs" "-Wl,-Bdynamic" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-nostartfiles" "-L" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained" "-L" "/lib/rustlib/x86_64-unknown-linux-musl/lib" "-o" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/template-e156b0da06238ed3" "-Wl,--gc-sections" "-static-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtendS.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtn.o" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `gchemol-readwrite` (test "template") due to 1 previous error; 1 warning emitted [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/rcrt1.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crti.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtbeginS.o" "/tmp/rustczMeddP/symbols.o" "<5 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libtest-*,libgetopts-*,libunicode_width-*,librustc_std_workspace_std-*}.rlib" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/{libgchemol_readwrite-156b8aac511d3776.rlib,libtera-54d4da775b4975fa.rlib,libslug-5782727555649698.rlib,libdeunicode-10e575d217d37a7d.rlib,libglobwalk-1cc1fd5b76967449.rlib,libignore-f301b31df6dc8ca9.rlib,libpercent_encoding-4808a78ba306dff8.rlib,libunic_segment-06830b2ed2ab8a98.rlib,libunic_ucd_segment-736607a6993d4bda.rlib,libunic_ucd_version-014ef47f161018ba.rlib,libunic_common-be5fc0f13f0000c6.rlib,libunic_char_property-fd2cf69e511793c8.rlib,libunic_char_range-1020285835010649.rlib,libhumansize-f48020a35cdfc32d.rlib,liblibm-c75a9b355d312f74.rlib,libchrono_tz-019bc8fae44afd4a.rlib,libphf-1764104349cf206b.rlib,libphf_shared-1c475433e6cab9fe.rlib,libsiphasher-a16aec30ce993c09.rlib,libchrono-6ea74727d035c92d.rlib,libiana_time_zone-bcdbc0f1f6b78de9.rlib,liblazy_regex-4cb112b12b8a37e7.rlib,libminijinja-19e04c9635cffe80.rlib,libhandlebars-77b6e9c7ca092363.rlib,libpest-222bf09a96cd3f39.rlib,libucd_trie-a31d05edd9cdb7bb.rlib,libthiserror-e00313c4c27905ba.rlib,libquick_error-bd2a7215cf93a039.rlib,libwalkdir-a6384958eaeb735e.rlib,libsame_file-ebfa63be59ead6ba.rlib,libgchemol_parser-204ff9ae33ba0ac7.rlib,libropey-b08bcf2a3b7eeb9f.rlib,libstr_indices-f21216268702a6f1.rlib,libsmallvec-f31619fc744d118e.rlib,libgrep-6601b483078a7c93.rlib,libgrep_regex-05ac667c820a69d1.rlib,libgrep_printer-656fc94af67d8b97.rlib,libbase64-0d2f1ec8ddb3f3f7.rlib,libgrep_searcher-5a0c227e9bf499be.rlib,libmemmap2-6e4d96052745fed8.rlib,libencoding_rs_io-129b809b8cd0a9f1.rlib,libencoding_rs-8097bd3694a71b8a.rlib,libgrep_matcher-94ca3c34f882f978.rlib,libgrep_cli-8a8c38aaee5a4000.rlib,libglobset-901f4fcf2c24d866.rlib,libbstr-3136c71fb0a216a4.rlib,libnom-dbba1b7928beca6d.rlib,libroxmltree-60cea30aa22a98e3.rlib,libxmlparser-1fbb74b352b4390e.rlib,libgchemol_core-93b800d924cf9a94.rlib,libenvy-6a16cdf277ca197a.rlib,libgchemol_neighbors-24dcf1c7e45466ce.rlib,liboctree-70ab2ce8162e890f.rlib,libindexmap-420bad1e15908d04.rlib,libhashbrown-94464ed281767ecc.rlib,libgchemol_geometry-5fc3de8e149ec466.rlib,librand_distr-adbd4db336849c6b.rlib,libbimap-c6ddbfece654155f.rlib,libgchemol_graph-042cba46b4efc5bd.rlib,libpetgraph-464833cadc250a6a.rlib,libfixedbitset-1705868b844c01b6.rlib,libgchemol_lattice-ece9b8ca96b6e0f7.rlib,libvecfx-4dedf437f82d1244.rlib,libordered_float-30918688b4cbc3a7.rlib,librand-3e5f111977445375.rlib,librand_chacha-5c05a5a26b1b1e70.rlib,libppv_lite86-989f981f78363571.rlib,libzerocopy-cb6604b278eb5d7e.rlib,librand_core-f6b9e65875633794.rlib,libgetrandom-2154da958851ecab.rlib,libnalgebra-aeb4829ceb72e1c6.rlib,libmatrixmultiply-e79b25aad610eb01.rlib,librawpointer-ee8696fe85e6dce4.rlib,libnum_rational-ca96b21c534d9c1b.rlib,libnum_integer-4ea01382d17a6cf6.rlib,libtypenum-946f014670f06d4a.rlib,libsimba-c778a09808f86c6b.rlib,libwide-19c4f86ae5dde2a2.rlib,libsafe_arch-3a24e57fde58a11a.rlib,libbytemuck-faa4676845bde000.rlib,libnum_complex-0a4934f058e1e1d9.rlib,libapprox-c62ece22be6e946d.rlib,libnum_traits-8b7c1d57da1718a6.rlib,libgchemol_gut-fce0ed17f552e019.rlib,libenv_logger-c48bc6c8fdd67e4d.rlib,libtermcolor-d92989218eee0326.rlib,libis_terminal-4d2d8eb84412c6f1.rlib,libhumantime-efb172a074f5bc89.rlib,libregex-f1a8c952e58c26b4.rlib,libregex_automata-8233902ecbe60afb.rlib,libaho_corasick-01303506f133d477.rlib,libregex_syntax-68ebd4ae9920c658.rlib,libtoml-7bd3da3052fe6832.rlib,libtoml_edit-3a40ffa452f70ec5.rlib,libserde_spanned-acedb104fa4b9447.rlib,libindexmap-fe91f3563e4dbaa4.rlib,libequivalent-c8ca4e154c540f6d.rlib,libhashbrown-217b7fa321d8dcb2.rlib,libwinnow-dd5aee8edb345c71.rlib,libtoml_datetime-ed65ac691b6834b9.rlib,libserde_json-d232852cb6de6df7.rlib,libmemchr-1aee4b866184c097.rlib,libitoa-ffb801c715a80a64.rlib,libryu-0a228f54b75663b5.rlib,libshell_escape-9c90764a101dd1a4.rlib,librayon-ad3c253249f60ca3.rlib,librayon_core-aa1ba359694adbc7.rlib,libcrossbeam_deque-7b1467e9406bcce1.rlib,libcrossbeam_epoch-7f2a1972b1339e08.rlib,libcrossbeam_utils-fb48174d8dac237b.rlib,liblog-7ed48074b9f3458e.rlib,libserde-2a85ca2d38138cc9.rlib,libitertools-87e61bebde2c34d8.rlib,libeither-da399c10ae937dac.rlib,libtime-94a2b7885563f8c1.rlib,libtime_core-5c207284db4e644c.rlib,libnum_conv-68ee3baea9d5f7f0.rlib,libderanged-caff22297a1c1234.rlib,libpowerfmt-4284c813f4b9cffc.rlib,liblazy_static-f3dc5c13b01a78ba.rlib,libtempfile-5ad95837d081aa3d.rlib,libgetrandom-f3c9250cc9b7c22f.rlib,libcfg_if-bfc6e2941b0f95e3.rlib,libfastrand-73632d5ce9fbbad9.rlib,librustix-77182ab78b026e4d.rlib,libbitflags-a339c845664ed1d6.rlib,liblinux_raw_sys-6a5ba6409b7a32a6.rlib,libanyhow-ba8dd496d0f3cbcd.rlib,libduct-c3481acf1b47d8aa.rlib,libshared_child-3ee1047bbfe72461.rlib,libsigchld-54b0325f10fc3584.rlib,libsignal_hook-8e631ffc4290105f.rlib,libsignal_hook_registry-f9fd0c6140c684af.rlib,libos_pipe-08e9742d4180c050.rlib,libonce_cell-9f23038a26dfc6d0.rlib,liblibc-8e354d7ef70926da.rlib,libclap-d94c8956e52ef186.rlib,libclap_builder-14598cc99d36f54f.rlib,libstrsim-e5a1ceb0bdbece3f.rlib,libanstream-498c41292703e3d7.rlib,libanstyle_query-4581b2ccffd33313.rlib,libis_terminal_polyfill-67333c1fd864e7ce.rlib,libcolorchoice-ac2a630b952dcf8e.rlib,libanstyle_parse-138e9e1ea51d32a3.rlib,libutf8parse-566e819dd32c0a03.rlib,libclap_lex-f9d0b9ae25e6f22b.rlib,libanstyle-fcc5c3f0dc5a830d.rlib}.rlib" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*}.rlib" "-lunwind" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libcfg_if-*,liblibc-*}.rlib" "-lc" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-L" "/tmp/rustczMeddP/raw-dylibs" "-Wl,-Bdynamic" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-nostartfiles" "-L" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained" "-L" "/lib/rustlib/x86_64-unknown-linux-musl/lib" "-o" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/gaussian-cea40c9cf1ad650d" "-Wl,--gc-sections" "-static-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtendS.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtn.o" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `gchemol-readwrite` (test "gaussian") due to 1 previous error; 2 warnings emitted [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/rcrt1.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crti.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtbeginS.o" "/tmp/rustcqUiw7D/symbols.o" "<3 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libtest-*,libgetopts-*,libunicode_width-*,librustc_std_workspace_std-*}.rlib" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/{libgchemol_readwrite-156b8aac511d3776.rlib,libtera-54d4da775b4975fa.rlib,libslug-5782727555649698.rlib,libdeunicode-10e575d217d37a7d.rlib,libglobwalk-1cc1fd5b76967449.rlib,libignore-f301b31df6dc8ca9.rlib,libpercent_encoding-4808a78ba306dff8.rlib,libunic_segment-06830b2ed2ab8a98.rlib,libunic_ucd_segment-736607a6993d4bda.rlib,libunic_ucd_version-014ef47f161018ba.rlib,libunic_common-be5fc0f13f0000c6.rlib,libunic_char_property-fd2cf69e511793c8.rlib,libunic_char_range-1020285835010649.rlib,libhumansize-f48020a35cdfc32d.rlib,liblibm-c75a9b355d312f74.rlib,libchrono_tz-019bc8fae44afd4a.rlib,libphf-1764104349cf206b.rlib,libphf_shared-1c475433e6cab9fe.rlib,libsiphasher-a16aec30ce993c09.rlib,libchrono-6ea74727d035c92d.rlib,libiana_time_zone-bcdbc0f1f6b78de9.rlib,liblazy_regex-4cb112b12b8a37e7.rlib,libminijinja-19e04c9635cffe80.rlib,libhandlebars-77b6e9c7ca092363.rlib,libpest-222bf09a96cd3f39.rlib,libucd_trie-a31d05edd9cdb7bb.rlib,libthiserror-e00313c4c27905ba.rlib,libquick_error-bd2a7215cf93a039.rlib,libwalkdir-a6384958eaeb735e.rlib,libsame_file-ebfa63be59ead6ba.rlib,libgchemol_parser-204ff9ae33ba0ac7.rlib,libropey-b08bcf2a3b7eeb9f.rlib,libstr_indices-f21216268702a6f1.rlib,libsmallvec-f31619fc744d118e.rlib,libgrep-6601b483078a7c93.rlib,libgrep_regex-05ac667c820a69d1.rlib,libgrep_printer-656fc94af67d8b97.rlib,libbase64-0d2f1ec8ddb3f3f7.rlib,libgrep_searcher-5a0c227e9bf499be.rlib,libmemmap2-6e4d96052745fed8.rlib,libencoding_rs_io-129b809b8cd0a9f1.rlib,libencoding_rs-8097bd3694a71b8a.rlib,libgrep_matcher-94ca3c34f882f978.rlib,libgrep_cli-8a8c38aaee5a4000.rlib,libglobset-901f4fcf2c24d866.rlib,libbstr-3136c71fb0a216a4.rlib,libnom-dbba1b7928beca6d.rlib,libroxmltree-60cea30aa22a98e3.rlib,libxmlparser-1fbb74b352b4390e.rlib,libgchemol_core-93b800d924cf9a94.rlib,libenvy-6a16cdf277ca197a.rlib,libgchemol_neighbors-24dcf1c7e45466ce.rlib,liboctree-70ab2ce8162e890f.rlib,libindexmap-420bad1e15908d04.rlib,libhashbrown-94464ed281767ecc.rlib,libgchemol_geometry-5fc3de8e149ec466.rlib,librand_distr-adbd4db336849c6b.rlib,libbimap-c6ddbfece654155f.rlib,libgchemol_graph-042cba46b4efc5bd.rlib,libpetgraph-464833cadc250a6a.rlib,libfixedbitset-1705868b844c01b6.rlib,libgchemol_lattice-ece9b8ca96b6e0f7.rlib,libvecfx-4dedf437f82d1244.rlib,libordered_float-30918688b4cbc3a7.rlib,librand-3e5f111977445375.rlib,librand_chacha-5c05a5a26b1b1e70.rlib,libppv_lite86-989f981f78363571.rlib,libzerocopy-cb6604b278eb5d7e.rlib,librand_core-f6b9e65875633794.rlib,libgetrandom-2154da958851ecab.rlib,libnalgebra-aeb4829ceb72e1c6.rlib,libmatrixmultiply-e79b25aad610eb01.rlib,librawpointer-ee8696fe85e6dce4.rlib,libnum_rational-ca96b21c534d9c1b.rlib,libnum_integer-4ea01382d17a6cf6.rlib,libtypenum-946f014670f06d4a.rlib,libsimba-c778a09808f86c6b.rlib,libwide-19c4f86ae5dde2a2.rlib,libsafe_arch-3a24e57fde58a11a.rlib,libbytemuck-faa4676845bde000.rlib,libnum_complex-0a4934f058e1e1d9.rlib,libapprox-c62ece22be6e946d.rlib,libnum_traits-8b7c1d57da1718a6.rlib,libgchemol_gut-fce0ed17f552e019.rlib,libenv_logger-c48bc6c8fdd67e4d.rlib,libtermcolor-d92989218eee0326.rlib,libis_terminal-4d2d8eb84412c6f1.rlib,libhumantime-efb172a074f5bc89.rlib,libregex-f1a8c952e58c26b4.rlib,libregex_automata-8233902ecbe60afb.rlib,libaho_corasick-01303506f133d477.rlib,libregex_syntax-68ebd4ae9920c658.rlib,libtoml-7bd3da3052fe6832.rlib,libtoml_edit-3a40ffa452f70ec5.rlib,libserde_spanned-acedb104fa4b9447.rlib,libindexmap-fe91f3563e4dbaa4.rlib,libequivalent-c8ca4e154c540f6d.rlib,libhashbrown-217b7fa321d8dcb2.rlib,libwinnow-dd5aee8edb345c71.rlib,libtoml_datetime-ed65ac691b6834b9.rlib,libserde_json-d232852cb6de6df7.rlib,libmemchr-1aee4b866184c097.rlib,libitoa-ffb801c715a80a64.rlib,libryu-0a228f54b75663b5.rlib,libshell_escape-9c90764a101dd1a4.rlib,librayon-ad3c253249f60ca3.rlib,librayon_core-aa1ba359694adbc7.rlib,libcrossbeam_deque-7b1467e9406bcce1.rlib,libcrossbeam_epoch-7f2a1972b1339e08.rlib,libcrossbeam_utils-fb48174d8dac237b.rlib,liblog-7ed48074b9f3458e.rlib,libserde-2a85ca2d38138cc9.rlib,libitertools-87e61bebde2c34d8.rlib,libeither-da399c10ae937dac.rlib,libtime-94a2b7885563f8c1.rlib,libtime_core-5c207284db4e644c.rlib,libnum_conv-68ee3baea9d5f7f0.rlib,libderanged-caff22297a1c1234.rlib,libpowerfmt-4284c813f4b9cffc.rlib,liblazy_static-f3dc5c13b01a78ba.rlib,libtempfile-5ad95837d081aa3d.rlib,libgetrandom-f3c9250cc9b7c22f.rlib,libcfg_if-bfc6e2941b0f95e3.rlib,libfastrand-73632d5ce9fbbad9.rlib,librustix-77182ab78b026e4d.rlib,libbitflags-a339c845664ed1d6.rlib,liblinux_raw_sys-6a5ba6409b7a32a6.rlib,libanyhow-ba8dd496d0f3cbcd.rlib,libduct-c3481acf1b47d8aa.rlib,libshared_child-3ee1047bbfe72461.rlib,libsigchld-54b0325f10fc3584.rlib,libsignal_hook-8e631ffc4290105f.rlib,libsignal_hook_registry-f9fd0c6140c684af.rlib,libos_pipe-08e9742d4180c050.rlib,libonce_cell-9f23038a26dfc6d0.rlib,liblibc-8e354d7ef70926da.rlib,libclap-d94c8956e52ef186.rlib,libclap_builder-14598cc99d36f54f.rlib,libstrsim-e5a1ceb0bdbece3f.rlib,libanstream-498c41292703e3d7.rlib,libanstyle_query-4581b2ccffd33313.rlib,libis_terminal_polyfill-67333c1fd864e7ce.rlib,libcolorchoice-ac2a630b952dcf8e.rlib,libanstyle_parse-138e9e1ea51d32a3.rlib,libutf8parse-566e819dd32c0a03.rlib,libclap_lex-f9d0b9ae25e6f22b.rlib,libanstyle-fcc5c3f0dc5a830d.rlib}.rlib" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*}.rlib" "-lunwind" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libcfg_if-*,liblibc-*}.rlib" "-lc" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-L" "/tmp/rustcqUiw7D/raw-dylibs" "-Wl,-Bdynamic" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-nostartfiles" "-L" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained" "-L" "/lib/rustlib/x86_64-unknown-linux-musl/lib" "-o" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/xsd-2744a5cd83d10f8f" "-Wl,--gc-sections" "-static-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtendS.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtn.o" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `gchemol-readwrite` (test "xsd") due to 1 previous error; 1 warning emitted [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/rcrt1.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crti.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtbeginS.o" "/tmp/rustcAA7d4X/symbols.o" "<5 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libtest-*,libgetopts-*,libunicode_width-*,librustc_std_workspace_std-*}.rlib" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/{libgchemol_readwrite-156b8aac511d3776.rlib,libtera-54d4da775b4975fa.rlib,libslug-5782727555649698.rlib,libdeunicode-10e575d217d37a7d.rlib,libglobwalk-1cc1fd5b76967449.rlib,libignore-f301b31df6dc8ca9.rlib,libpercent_encoding-4808a78ba306dff8.rlib,libunic_segment-06830b2ed2ab8a98.rlib,libunic_ucd_segment-736607a6993d4bda.rlib,libunic_ucd_version-014ef47f161018ba.rlib,libunic_common-be5fc0f13f0000c6.rlib,libunic_char_property-fd2cf69e511793c8.rlib,libunic_char_range-1020285835010649.rlib,libhumansize-f48020a35cdfc32d.rlib,liblibm-c75a9b355d312f74.rlib,libchrono_tz-019bc8fae44afd4a.rlib,libphf-1764104349cf206b.rlib,libphf_shared-1c475433e6cab9fe.rlib,libsiphasher-a16aec30ce993c09.rlib,libchrono-6ea74727d035c92d.rlib,libiana_time_zone-bcdbc0f1f6b78de9.rlib,liblazy_regex-4cb112b12b8a37e7.rlib,libminijinja-19e04c9635cffe80.rlib,libhandlebars-77b6e9c7ca092363.rlib,libpest-222bf09a96cd3f39.rlib,libucd_trie-a31d05edd9cdb7bb.rlib,libthiserror-e00313c4c27905ba.rlib,libquick_error-bd2a7215cf93a039.rlib,libwalkdir-a6384958eaeb735e.rlib,libsame_file-ebfa63be59ead6ba.rlib,libgchemol_parser-204ff9ae33ba0ac7.rlib,libropey-b08bcf2a3b7eeb9f.rlib,libstr_indices-f21216268702a6f1.rlib,libsmallvec-f31619fc744d118e.rlib,libgrep-6601b483078a7c93.rlib,libgrep_regex-05ac667c820a69d1.rlib,libgrep_printer-656fc94af67d8b97.rlib,libbase64-0d2f1ec8ddb3f3f7.rlib,libgrep_searcher-5a0c227e9bf499be.rlib,libmemmap2-6e4d96052745fed8.rlib,libencoding_rs_io-129b809b8cd0a9f1.rlib,libencoding_rs-8097bd3694a71b8a.rlib,libgrep_matcher-94ca3c34f882f978.rlib,libgrep_cli-8a8c38aaee5a4000.rlib,libglobset-901f4fcf2c24d866.rlib,libbstr-3136c71fb0a216a4.rlib,libnom-dbba1b7928beca6d.rlib,libroxmltree-60cea30aa22a98e3.rlib,libxmlparser-1fbb74b352b4390e.rlib,libgchemol_core-93b800d924cf9a94.rlib,libenvy-6a16cdf277ca197a.rlib,libgchemol_neighbors-24dcf1c7e45466ce.rlib,liboctree-70ab2ce8162e890f.rlib,libindexmap-420bad1e15908d04.rlib,libhashbrown-94464ed281767ecc.rlib,libgchemol_geometry-5fc3de8e149ec466.rlib,librand_distr-adbd4db336849c6b.rlib,libbimap-c6ddbfece654155f.rlib,libgchemol_graph-042cba46b4efc5bd.rlib,libpetgraph-464833cadc250a6a.rlib,libfixedbitset-1705868b844c01b6.rlib,libgchemol_lattice-ece9b8ca96b6e0f7.rlib,libvecfx-4dedf437f82d1244.rlib,libordered_float-30918688b4cbc3a7.rlib,librand-3e5f111977445375.rlib,librand_chacha-5c05a5a26b1b1e70.rlib,libppv_lite86-989f981f78363571.rlib,libzerocopy-cb6604b278eb5d7e.rlib,librand_core-f6b9e65875633794.rlib,libgetrandom-2154da958851ecab.rlib,libnalgebra-aeb4829ceb72e1c6.rlib,libmatrixmultiply-e79b25aad610eb01.rlib,librawpointer-ee8696fe85e6dce4.rlib,libnum_rational-ca96b21c534d9c1b.rlib,libnum_integer-4ea01382d17a6cf6.rlib,libtypenum-946f014670f06d4a.rlib,libsimba-c778a09808f86c6b.rlib,libwide-19c4f86ae5dde2a2.rlib,libsafe_arch-3a24e57fde58a11a.rlib,libbytemuck-faa4676845bde000.rlib,libnum_complex-0a4934f058e1e1d9.rlib,libapprox-c62ece22be6e946d.rlib,libnum_traits-8b7c1d57da1718a6.rlib,libgchemol_gut-fce0ed17f552e019.rlib,libenv_logger-c48bc6c8fdd67e4d.rlib,libtermcolor-d92989218eee0326.rlib,libis_terminal-4d2d8eb84412c6f1.rlib,libhumantime-efb172a074f5bc89.rlib,libregex-f1a8c952e58c26b4.rlib,libregex_automata-8233902ecbe60afb.rlib,libaho_corasick-01303506f133d477.rlib,libregex_syntax-68ebd4ae9920c658.rlib,libtoml-7bd3da3052fe6832.rlib,libtoml_edit-3a40ffa452f70ec5.rlib,libserde_spanned-acedb104fa4b9447.rlib,libindexmap-fe91f3563e4dbaa4.rlib,libequivalent-c8ca4e154c540f6d.rlib,libhashbrown-217b7fa321d8dcb2.rlib,libwinnow-dd5aee8edb345c71.rlib,libtoml_datetime-ed65ac691b6834b9.rlib,libserde_json-d232852cb6de6df7.rlib,libmemchr-1aee4b866184c097.rlib,libitoa-ffb801c715a80a64.rlib,libryu-0a228f54b75663b5.rlib,libshell_escape-9c90764a101dd1a4.rlib,librayon-ad3c253249f60ca3.rlib,librayon_core-aa1ba359694adbc7.rlib,libcrossbeam_deque-7b1467e9406bcce1.rlib,libcrossbeam_epoch-7f2a1972b1339e08.rlib,libcrossbeam_utils-fb48174d8dac237b.rlib,liblog-7ed48074b9f3458e.rlib,libserde-2a85ca2d38138cc9.rlib,libitertools-87e61bebde2c34d8.rlib,libeither-da399c10ae937dac.rlib,libtime-94a2b7885563f8c1.rlib,libtime_core-5c207284db4e644c.rlib,libnum_conv-68ee3baea9d5f7f0.rlib,libderanged-caff22297a1c1234.rlib,libpowerfmt-4284c813f4b9cffc.rlib,liblazy_static-f3dc5c13b01a78ba.rlib,libtempfile-5ad95837d081aa3d.rlib,libgetrandom-f3c9250cc9b7c22f.rlib,libcfg_if-bfc6e2941b0f95e3.rlib,libfastrand-73632d5ce9fbbad9.rlib,librustix-77182ab78b026e4d.rlib,libbitflags-a339c845664ed1d6.rlib,liblinux_raw_sys-6a5ba6409b7a32a6.rlib,libanyhow-ba8dd496d0f3cbcd.rlib,libduct-c3481acf1b47d8aa.rlib,libshared_child-3ee1047bbfe72461.rlib,libsigchld-54b0325f10fc3584.rlib,libsignal_hook-8e631ffc4290105f.rlib,libsignal_hook_registry-f9fd0c6140c684af.rlib,libos_pipe-08e9742d4180c050.rlib,libonce_cell-9f23038a26dfc6d0.rlib,liblibc-8e354d7ef70926da.rlib,libclap-d94c8956e52ef186.rlib,libclap_builder-14598cc99d36f54f.rlib,libstrsim-e5a1ceb0bdbece3f.rlib,libanstream-498c41292703e3d7.rlib,libanstyle_query-4581b2ccffd33313.rlib,libis_terminal_polyfill-67333c1fd864e7ce.rlib,libcolorchoice-ac2a630b952dcf8e.rlib,libanstyle_parse-138e9e1ea51d32a3.rlib,libutf8parse-566e819dd32c0a03.rlib,libclap_lex-f9d0b9ae25e6f22b.rlib,libanstyle-fcc5c3f0dc5a830d.rlib}.rlib" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*}.rlib" "-lunwind" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libcfg_if-*,liblibc-*}.rlib" "-lc" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-L" "/tmp/rustcAA7d4X/raw-dylibs" "-Wl,-Bdynamic" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-nostartfiles" "-L" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained" "-L" "/lib/rustlib/x86_64-unknown-linux-musl/lib" "-o" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/cif-6e5d066665c50c61" "-Wl,--gc-sections" "-static-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtendS.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtn.o" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `gchemol-readwrite` (test "cif") due to 1 previous error; 3 warnings emitted [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/rcrt1.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crti.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtbeginS.o" "/tmp/rustcqbyL6v/symbols.o" "<5 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libtest-*,libgetopts-*,libunicode_width-*,librustc_std_workspace_std-*}.rlib" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/{libgchemol_readwrite-156b8aac511d3776.rlib,libtera-54d4da775b4975fa.rlib,libslug-5782727555649698.rlib,libdeunicode-10e575d217d37a7d.rlib,libglobwalk-1cc1fd5b76967449.rlib,libignore-f301b31df6dc8ca9.rlib,libpercent_encoding-4808a78ba306dff8.rlib,libunic_segment-06830b2ed2ab8a98.rlib,libunic_ucd_segment-736607a6993d4bda.rlib,libunic_ucd_version-014ef47f161018ba.rlib,libunic_common-be5fc0f13f0000c6.rlib,libunic_char_property-fd2cf69e511793c8.rlib,libunic_char_range-1020285835010649.rlib,libhumansize-f48020a35cdfc32d.rlib,liblibm-c75a9b355d312f74.rlib,libchrono_tz-019bc8fae44afd4a.rlib,libphf-1764104349cf206b.rlib,libphf_shared-1c475433e6cab9fe.rlib,libsiphasher-a16aec30ce993c09.rlib,libchrono-6ea74727d035c92d.rlib,libiana_time_zone-bcdbc0f1f6b78de9.rlib,liblazy_regex-4cb112b12b8a37e7.rlib,libminijinja-19e04c9635cffe80.rlib,libhandlebars-77b6e9c7ca092363.rlib,libpest-222bf09a96cd3f39.rlib,libucd_trie-a31d05edd9cdb7bb.rlib,libthiserror-e00313c4c27905ba.rlib,libquick_error-bd2a7215cf93a039.rlib,libwalkdir-a6384958eaeb735e.rlib,libsame_file-ebfa63be59ead6ba.rlib,libgchemol_parser-204ff9ae33ba0ac7.rlib,libropey-b08bcf2a3b7eeb9f.rlib,libstr_indices-f21216268702a6f1.rlib,libsmallvec-f31619fc744d118e.rlib,libgrep-6601b483078a7c93.rlib,libgrep_regex-05ac667c820a69d1.rlib,libgrep_printer-656fc94af67d8b97.rlib,libbase64-0d2f1ec8ddb3f3f7.rlib,libgrep_searcher-5a0c227e9bf499be.rlib,libmemmap2-6e4d96052745fed8.rlib,libencoding_rs_io-129b809b8cd0a9f1.rlib,libencoding_rs-8097bd3694a71b8a.rlib,libgrep_matcher-94ca3c34f882f978.rlib,libgrep_cli-8a8c38aaee5a4000.rlib,libglobset-901f4fcf2c24d866.rlib,libbstr-3136c71fb0a216a4.rlib,libnom-dbba1b7928beca6d.rlib,libroxmltree-60cea30aa22a98e3.rlib,libxmlparser-1fbb74b352b4390e.rlib,libgchemol_core-93b800d924cf9a94.rlib,libenvy-6a16cdf277ca197a.rlib,libgchemol_neighbors-24dcf1c7e45466ce.rlib,liboctree-70ab2ce8162e890f.rlib,libindexmap-420bad1e15908d04.rlib,libhashbrown-94464ed281767ecc.rlib,libgchemol_geometry-5fc3de8e149ec466.rlib,librand_distr-adbd4db336849c6b.rlib,libbimap-c6ddbfece654155f.rlib,libgchemol_graph-042cba46b4efc5bd.rlib,libpetgraph-464833cadc250a6a.rlib,libfixedbitset-1705868b844c01b6.rlib,libgchemol_lattice-ece9b8ca96b6e0f7.rlib,libvecfx-4dedf437f82d1244.rlib,libordered_float-30918688b4cbc3a7.rlib,librand-3e5f111977445375.rlib,librand_chacha-5c05a5a26b1b1e70.rlib,libppv_lite86-989f981f78363571.rlib,libzerocopy-cb6604b278eb5d7e.rlib,librand_core-f6b9e65875633794.rlib,libgetrandom-2154da958851ecab.rlib,libnalgebra-aeb4829ceb72e1c6.rlib,libmatrixmultiply-e79b25aad610eb01.rlib,librawpointer-ee8696fe85e6dce4.rlib,libnum_rational-ca96b21c534d9c1b.rlib,libnum_integer-4ea01382d17a6cf6.rlib,libtypenum-946f014670f06d4a.rlib,libsimba-c778a09808f86c6b.rlib,libwide-19c4f86ae5dde2a2.rlib,libsafe_arch-3a24e57fde58a11a.rlib,libbytemuck-faa4676845bde000.rlib,libnum_complex-0a4934f058e1e1d9.rlib,libapprox-c62ece22be6e946d.rlib,libnum_traits-8b7c1d57da1718a6.rlib,libgchemol_gut-fce0ed17f552e019.rlib,libenv_logger-c48bc6c8fdd67e4d.rlib,libtermcolor-d92989218eee0326.rlib,libis_terminal-4d2d8eb84412c6f1.rlib,libhumantime-efb172a074f5bc89.rlib,libregex-f1a8c952e58c26b4.rlib,libregex_automata-8233902ecbe60afb.rlib,libaho_corasick-01303506f133d477.rlib,libregex_syntax-68ebd4ae9920c658.rlib,libtoml-7bd3da3052fe6832.rlib,libtoml_edit-3a40ffa452f70ec5.rlib,libserde_spanned-acedb104fa4b9447.rlib,libindexmap-fe91f3563e4dbaa4.rlib,libequivalent-c8ca4e154c540f6d.rlib,libhashbrown-217b7fa321d8dcb2.rlib,libwinnow-dd5aee8edb345c71.rlib,libtoml_datetime-ed65ac691b6834b9.rlib,libserde_json-d232852cb6de6df7.rlib,libmemchr-1aee4b866184c097.rlib,libitoa-ffb801c715a80a64.rlib,libryu-0a228f54b75663b5.rlib,libshell_escape-9c90764a101dd1a4.rlib,librayon-ad3c253249f60ca3.rlib,librayon_core-aa1ba359694adbc7.rlib,libcrossbeam_deque-7b1467e9406bcce1.rlib,libcrossbeam_epoch-7f2a1972b1339e08.rlib,libcrossbeam_utils-fb48174d8dac237b.rlib,liblog-7ed48074b9f3458e.rlib,libserde-2a85ca2d38138cc9.rlib,libitertools-87e61bebde2c34d8.rlib,libeither-da399c10ae937dac.rlib,libtime-94a2b7885563f8c1.rlib,libtime_core-5c207284db4e644c.rlib,libnum_conv-68ee3baea9d5f7f0.rlib,libderanged-caff22297a1c1234.rlib,libpowerfmt-4284c813f4b9cffc.rlib,liblazy_static-f3dc5c13b01a78ba.rlib,libtempfile-5ad95837d081aa3d.rlib,libgetrandom-f3c9250cc9b7c22f.rlib,libcfg_if-bfc6e2941b0f95e3.rlib,libfastrand-73632d5ce9fbbad9.rlib,librustix-77182ab78b026e4d.rlib,libbitflags-a339c845664ed1d6.rlib,liblinux_raw_sys-6a5ba6409b7a32a6.rlib,libanyhow-ba8dd496d0f3cbcd.rlib,libduct-c3481acf1b47d8aa.rlib,libshared_child-3ee1047bbfe72461.rlib,libsigchld-54b0325f10fc3584.rlib,libsignal_hook-8e631ffc4290105f.rlib,libsignal_hook_registry-f9fd0c6140c684af.rlib,libos_pipe-08e9742d4180c050.rlib,libonce_cell-9f23038a26dfc6d0.rlib,liblibc-8e354d7ef70926da.rlib,libclap-d94c8956e52ef186.rlib,libclap_builder-14598cc99d36f54f.rlib,libstrsim-e5a1ceb0bdbece3f.rlib,libanstream-498c41292703e3d7.rlib,libanstyle_query-4581b2ccffd33313.rlib,libis_terminal_polyfill-67333c1fd864e7ce.rlib,libcolorchoice-ac2a630b952dcf8e.rlib,libanstyle_parse-138e9e1ea51d32a3.rlib,libutf8parse-566e819dd32c0a03.rlib,libclap_lex-f9d0b9ae25e6f22b.rlib,libanstyle-fcc5c3f0dc5a830d.rlib}.rlib" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*}.rlib" "-lunwind" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libcfg_if-*,liblibc-*}.rlib" "-lc" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-L" "/tmp/rustcqbyL6v/raw-dylibs" "-Wl,-Bdynamic" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-nostartfiles" "-L" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained" "-L" "/lib/rustlib/x86_64-unknown-linux-musl/lib" "-o" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/sdf-4cad96c53f86f6de" "-Wl,--gc-sections" "-static-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtendS.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtn.o" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `gchemol-readwrite` (test "sdf") due to 1 previous error; 2 warnings emitted [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/rcrt1.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crti.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtbeginS.o" "/tmp/rustclni9bc/symbols.o" "<5 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libtest-*,libgetopts-*,libunicode_width-*,librustc_std_workspace_std-*}.rlib" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/{libgchemol_readwrite-156b8aac511d3776.rlib,libtera-54d4da775b4975fa.rlib,libslug-5782727555649698.rlib,libdeunicode-10e575d217d37a7d.rlib,libglobwalk-1cc1fd5b76967449.rlib,libignore-f301b31df6dc8ca9.rlib,libpercent_encoding-4808a78ba306dff8.rlib,libunic_segment-06830b2ed2ab8a98.rlib,libunic_ucd_segment-736607a6993d4bda.rlib,libunic_ucd_version-014ef47f161018ba.rlib,libunic_common-be5fc0f13f0000c6.rlib,libunic_char_property-fd2cf69e511793c8.rlib,libunic_char_range-1020285835010649.rlib,libhumansize-f48020a35cdfc32d.rlib,liblibm-c75a9b355d312f74.rlib,libchrono_tz-019bc8fae44afd4a.rlib,libphf-1764104349cf206b.rlib,libphf_shared-1c475433e6cab9fe.rlib,libsiphasher-a16aec30ce993c09.rlib,libchrono-6ea74727d035c92d.rlib,libiana_time_zone-bcdbc0f1f6b78de9.rlib,liblazy_regex-4cb112b12b8a37e7.rlib,libminijinja-19e04c9635cffe80.rlib,libhandlebars-77b6e9c7ca092363.rlib,libpest-222bf09a96cd3f39.rlib,libucd_trie-a31d05edd9cdb7bb.rlib,libthiserror-e00313c4c27905ba.rlib,libquick_error-bd2a7215cf93a039.rlib,libwalkdir-a6384958eaeb735e.rlib,libsame_file-ebfa63be59ead6ba.rlib,libgchemol_parser-204ff9ae33ba0ac7.rlib,libropey-b08bcf2a3b7eeb9f.rlib,libstr_indices-f21216268702a6f1.rlib,libsmallvec-f31619fc744d118e.rlib,libgrep-6601b483078a7c93.rlib,libgrep_regex-05ac667c820a69d1.rlib,libgrep_printer-656fc94af67d8b97.rlib,libbase64-0d2f1ec8ddb3f3f7.rlib,libgrep_searcher-5a0c227e9bf499be.rlib,libmemmap2-6e4d96052745fed8.rlib,libencoding_rs_io-129b809b8cd0a9f1.rlib,libencoding_rs-8097bd3694a71b8a.rlib,libgrep_matcher-94ca3c34f882f978.rlib,libgrep_cli-8a8c38aaee5a4000.rlib,libglobset-901f4fcf2c24d866.rlib,libbstr-3136c71fb0a216a4.rlib,libnom-dbba1b7928beca6d.rlib,libroxmltree-60cea30aa22a98e3.rlib,libxmlparser-1fbb74b352b4390e.rlib,libgchemol_core-93b800d924cf9a94.rlib,libenvy-6a16cdf277ca197a.rlib,libgchemol_neighbors-24dcf1c7e45466ce.rlib,liboctree-70ab2ce8162e890f.rlib,libindexmap-420bad1e15908d04.rlib,libhashbrown-94464ed281767ecc.rlib,libgchemol_geometry-5fc3de8e149ec466.rlib,librand_distr-adbd4db336849c6b.rlib,libbimap-c6ddbfece654155f.rlib,libgchemol_graph-042cba46b4efc5bd.rlib,libpetgraph-464833cadc250a6a.rlib,libfixedbitset-1705868b844c01b6.rlib,libgchemol_lattice-ece9b8ca96b6e0f7.rlib,libvecfx-4dedf437f82d1244.rlib,libordered_float-30918688b4cbc3a7.rlib,librand-3e5f111977445375.rlib,librand_chacha-5c05a5a26b1b1e70.rlib,libppv_lite86-989f981f78363571.rlib,libzerocopy-cb6604b278eb5d7e.rlib,librand_core-f6b9e65875633794.rlib,libgetrandom-2154da958851ecab.rlib,libnalgebra-aeb4829ceb72e1c6.rlib,libmatrixmultiply-e79b25aad610eb01.rlib,librawpointer-ee8696fe85e6dce4.rlib,libnum_rational-ca96b21c534d9c1b.rlib,libnum_integer-4ea01382d17a6cf6.rlib,libtypenum-946f014670f06d4a.rlib,libsimba-c778a09808f86c6b.rlib,libwide-19c4f86ae5dde2a2.rlib,libsafe_arch-3a24e57fde58a11a.rlib,libbytemuck-faa4676845bde000.rlib,libnum_complex-0a4934f058e1e1d9.rlib,libapprox-c62ece22be6e946d.rlib,libnum_traits-8b7c1d57da1718a6.rlib,libgchemol_gut-fce0ed17f552e019.rlib,libenv_logger-c48bc6c8fdd67e4d.rlib,libtermcolor-d92989218eee0326.rlib,libis_terminal-4d2d8eb84412c6f1.rlib,libhumantime-efb172a074f5bc89.rlib,libregex-f1a8c952e58c26b4.rlib,libregex_automata-8233902ecbe60afb.rlib,libaho_corasick-01303506f133d477.rlib,libregex_syntax-68ebd4ae9920c658.rlib,libtoml-7bd3da3052fe6832.rlib,libtoml_edit-3a40ffa452f70ec5.rlib,libserde_spanned-acedb104fa4b9447.rlib,libindexmap-fe91f3563e4dbaa4.rlib,libequivalent-c8ca4e154c540f6d.rlib,libhashbrown-217b7fa321d8dcb2.rlib,libwinnow-dd5aee8edb345c71.rlib,libtoml_datetime-ed65ac691b6834b9.rlib,libserde_json-d232852cb6de6df7.rlib,libmemchr-1aee4b866184c097.rlib,libitoa-ffb801c715a80a64.rlib,libryu-0a228f54b75663b5.rlib,libshell_escape-9c90764a101dd1a4.rlib,librayon-ad3c253249f60ca3.rlib,librayon_core-aa1ba359694adbc7.rlib,libcrossbeam_deque-7b1467e9406bcce1.rlib,libcrossbeam_epoch-7f2a1972b1339e08.rlib,libcrossbeam_utils-fb48174d8dac237b.rlib,liblog-7ed48074b9f3458e.rlib,libserde-2a85ca2d38138cc9.rlib,libitertools-87e61bebde2c34d8.rlib,libeither-da399c10ae937dac.rlib,libtime-94a2b7885563f8c1.rlib,libtime_core-5c207284db4e644c.rlib,libnum_conv-68ee3baea9d5f7f0.rlib,libderanged-caff22297a1c1234.rlib,libpowerfmt-4284c813f4b9cffc.rlib,liblazy_static-f3dc5c13b01a78ba.rlib,libtempfile-5ad95837d081aa3d.rlib,libgetrandom-f3c9250cc9b7c22f.rlib,libcfg_if-bfc6e2941b0f95e3.rlib,libfastrand-73632d5ce9fbbad9.rlib,librustix-77182ab78b026e4d.rlib,libbitflags-a339c845664ed1d6.rlib,liblinux_raw_sys-6a5ba6409b7a32a6.rlib,libanyhow-ba8dd496d0f3cbcd.rlib,libduct-c3481acf1b47d8aa.rlib,libshared_child-3ee1047bbfe72461.rlib,libsigchld-54b0325f10fc3584.rlib,libsignal_hook-8e631ffc4290105f.rlib,libsignal_hook_registry-f9fd0c6140c684af.rlib,libos_pipe-08e9742d4180c050.rlib,libonce_cell-9f23038a26dfc6d0.rlib,liblibc-8e354d7ef70926da.rlib,libclap-d94c8956e52ef186.rlib,libclap_builder-14598cc99d36f54f.rlib,libstrsim-e5a1ceb0bdbece3f.rlib,libanstream-498c41292703e3d7.rlib,libanstyle_query-4581b2ccffd33313.rlib,libis_terminal_polyfill-67333c1fd864e7ce.rlib,libcolorchoice-ac2a630b952dcf8e.rlib,libanstyle_parse-138e9e1ea51d32a3.rlib,libutf8parse-566e819dd32c0a03.rlib,libclap_lex-f9d0b9ae25e6f22b.rlib,libanstyle-fcc5c3f0dc5a830d.rlib}.rlib" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*}.rlib" "-lunwind" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libcfg_if-*,liblibc-*}.rlib" "-lc" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-L" "/tmp/rustclni9bc/raw-dylibs" "-Wl,-Bdynamic" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-nostartfiles" "-L" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained" "-L" "/lib/rustlib/x86_64-unknown-linux-musl/lib" "-o" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/pdb-ed150d5e23296b71" "-Wl,--gc-sections" "-static-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtendS.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtn.o" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `gchemol-readwrite` (test "pdb") due to 1 previous error; 2 warnings emitted [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/rcrt1.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crti.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtbeginS.o" "/tmp/rustc6aNPIA/symbols.o" "<5 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libtest-*,libgetopts-*,libunicode_width-*,librustc_std_workspace_std-*}.rlib" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/{libgchemol_readwrite-156b8aac511d3776.rlib,libtera-54d4da775b4975fa.rlib,libslug-5782727555649698.rlib,libdeunicode-10e575d217d37a7d.rlib,libglobwalk-1cc1fd5b76967449.rlib,libignore-f301b31df6dc8ca9.rlib,libpercent_encoding-4808a78ba306dff8.rlib,libunic_segment-06830b2ed2ab8a98.rlib,libunic_ucd_segment-736607a6993d4bda.rlib,libunic_ucd_version-014ef47f161018ba.rlib,libunic_common-be5fc0f13f0000c6.rlib,libunic_char_property-fd2cf69e511793c8.rlib,libunic_char_range-1020285835010649.rlib,libhumansize-f48020a35cdfc32d.rlib,liblibm-c75a9b355d312f74.rlib,libchrono_tz-019bc8fae44afd4a.rlib,libphf-1764104349cf206b.rlib,libphf_shared-1c475433e6cab9fe.rlib,libsiphasher-a16aec30ce993c09.rlib,libchrono-6ea74727d035c92d.rlib,libiana_time_zone-bcdbc0f1f6b78de9.rlib,liblazy_regex-4cb112b12b8a37e7.rlib,libminijinja-19e04c9635cffe80.rlib,libhandlebars-77b6e9c7ca092363.rlib,libpest-222bf09a96cd3f39.rlib,libucd_trie-a31d05edd9cdb7bb.rlib,libthiserror-e00313c4c27905ba.rlib,libquick_error-bd2a7215cf93a039.rlib,libwalkdir-a6384958eaeb735e.rlib,libsame_file-ebfa63be59ead6ba.rlib,libgchemol_parser-204ff9ae33ba0ac7.rlib,libropey-b08bcf2a3b7eeb9f.rlib,libstr_indices-f21216268702a6f1.rlib,libsmallvec-f31619fc744d118e.rlib,libgrep-6601b483078a7c93.rlib,libgrep_regex-05ac667c820a69d1.rlib,libgrep_printer-656fc94af67d8b97.rlib,libbase64-0d2f1ec8ddb3f3f7.rlib,libgrep_searcher-5a0c227e9bf499be.rlib,libmemmap2-6e4d96052745fed8.rlib,libencoding_rs_io-129b809b8cd0a9f1.rlib,libencoding_rs-8097bd3694a71b8a.rlib,libgrep_matcher-94ca3c34f882f978.rlib,libgrep_cli-8a8c38aaee5a4000.rlib,libglobset-901f4fcf2c24d866.rlib,libbstr-3136c71fb0a216a4.rlib,libnom-dbba1b7928beca6d.rlib,libroxmltree-60cea30aa22a98e3.rlib,libxmlparser-1fbb74b352b4390e.rlib,libgchemol_core-93b800d924cf9a94.rlib,libenvy-6a16cdf277ca197a.rlib,libgchemol_neighbors-24dcf1c7e45466ce.rlib,liboctree-70ab2ce8162e890f.rlib,libindexmap-420bad1e15908d04.rlib,libhashbrown-94464ed281767ecc.rlib,libgchemol_geometry-5fc3de8e149ec466.rlib,librand_distr-adbd4db336849c6b.rlib,libbimap-c6ddbfece654155f.rlib,libgchemol_graph-042cba46b4efc5bd.rlib,libpetgraph-464833cadc250a6a.rlib,libfixedbitset-1705868b844c01b6.rlib,libgchemol_lattice-ece9b8ca96b6e0f7.rlib,libvecfx-4dedf437f82d1244.rlib,libordered_float-30918688b4cbc3a7.rlib,librand-3e5f111977445375.rlib,librand_chacha-5c05a5a26b1b1e70.rlib,libppv_lite86-989f981f78363571.rlib,libzerocopy-cb6604b278eb5d7e.rlib,librand_core-f6b9e65875633794.rlib,libgetrandom-2154da958851ecab.rlib,libnalgebra-aeb4829ceb72e1c6.rlib,libmatrixmultiply-e79b25aad610eb01.rlib,librawpointer-ee8696fe85e6dce4.rlib,libnum_rational-ca96b21c534d9c1b.rlib,libnum_integer-4ea01382d17a6cf6.rlib,libtypenum-946f014670f06d4a.rlib,libsimba-c778a09808f86c6b.rlib,libwide-19c4f86ae5dde2a2.rlib,libsafe_arch-3a24e57fde58a11a.rlib,libbytemuck-faa4676845bde000.rlib,libnum_complex-0a4934f058e1e1d9.rlib,libapprox-c62ece22be6e946d.rlib,libnum_traits-8b7c1d57da1718a6.rlib,libgchemol_gut-fce0ed17f552e019.rlib,libenv_logger-c48bc6c8fdd67e4d.rlib,libtermcolor-d92989218eee0326.rlib,libis_terminal-4d2d8eb84412c6f1.rlib,libhumantime-efb172a074f5bc89.rlib,libregex-f1a8c952e58c26b4.rlib,libregex_automata-8233902ecbe60afb.rlib,libaho_corasick-01303506f133d477.rlib,libregex_syntax-68ebd4ae9920c658.rlib,libtoml-7bd3da3052fe6832.rlib,libtoml_edit-3a40ffa452f70ec5.rlib,libserde_spanned-acedb104fa4b9447.rlib,libindexmap-fe91f3563e4dbaa4.rlib,libequivalent-c8ca4e154c540f6d.rlib,libhashbrown-217b7fa321d8dcb2.rlib,libwinnow-dd5aee8edb345c71.rlib,libtoml_datetime-ed65ac691b6834b9.rlib,libserde_json-d232852cb6de6df7.rlib,libmemchr-1aee4b866184c097.rlib,libitoa-ffb801c715a80a64.rlib,libryu-0a228f54b75663b5.rlib,libshell_escape-9c90764a101dd1a4.rlib,librayon-ad3c253249f60ca3.rlib,librayon_core-aa1ba359694adbc7.rlib,libcrossbeam_deque-7b1467e9406bcce1.rlib,libcrossbeam_epoch-7f2a1972b1339e08.rlib,libcrossbeam_utils-fb48174d8dac237b.rlib,liblog-7ed48074b9f3458e.rlib,libserde-2a85ca2d38138cc9.rlib,libitertools-87e61bebde2c34d8.rlib,libeither-da399c10ae937dac.rlib,libtime-94a2b7885563f8c1.rlib,libtime_core-5c207284db4e644c.rlib,libnum_conv-68ee3baea9d5f7f0.rlib,libderanged-caff22297a1c1234.rlib,libpowerfmt-4284c813f4b9cffc.rlib,liblazy_static-f3dc5c13b01a78ba.rlib,libtempfile-5ad95837d081aa3d.rlib,libgetrandom-f3c9250cc9b7c22f.rlib,libcfg_if-bfc6e2941b0f95e3.rlib,libfastrand-73632d5ce9fbbad9.rlib,librustix-77182ab78b026e4d.rlib,libbitflags-a339c845664ed1d6.rlib,liblinux_raw_sys-6a5ba6409b7a32a6.rlib,libanyhow-ba8dd496d0f3cbcd.rlib,libduct-c3481acf1b47d8aa.rlib,libshared_child-3ee1047bbfe72461.rlib,libsigchld-54b0325f10fc3584.rlib,libsignal_hook-8e631ffc4290105f.rlib,libsignal_hook_registry-f9fd0c6140c684af.rlib,libos_pipe-08e9742d4180c050.rlib,libonce_cell-9f23038a26dfc6d0.rlib,liblibc-8e354d7ef70926da.rlib,libclap-d94c8956e52ef186.rlib,libclap_builder-14598cc99d36f54f.rlib,libstrsim-e5a1ceb0bdbece3f.rlib,libanstream-498c41292703e3d7.rlib,libanstyle_query-4581b2ccffd33313.rlib,libis_terminal_polyfill-67333c1fd864e7ce.rlib,libcolorchoice-ac2a630b952dcf8e.rlib,libanstyle_parse-138e9e1ea51d32a3.rlib,libutf8parse-566e819dd32c0a03.rlib,libclap_lex-f9d0b9ae25e6f22b.rlib,libanstyle-fcc5c3f0dc5a830d.rlib}.rlib" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*}.rlib" "-lunwind" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libcfg_if-*,liblibc-*}.rlib" "-lc" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-L" "/tmp/rustc6aNPIA/raw-dylibs" "-Wl,-Bdynamic" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-nostartfiles" "-L" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained" "-L" "/lib/rustlib/x86_64-unknown-linux-musl/lib" "-o" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/pxyz-234555ceab10bd9e" "-Wl,--gc-sections" "-static-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtendS.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtn.o" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `gchemol-readwrite` (test "pxyz") due to 1 previous error; 2 warnings emitted [INFO] running `Command { std: "docker" "inspect" "ae1c658f05b08e0174822cc5f34717af6732f6d4f682955204f4f27a6aa0a488", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ae1c658f05b08e0174822cc5f34717af6732f6d4f682955204f4f27a6aa0a488", kill_on_drop: false }` [INFO] [stdout] ae1c658f05b08e0174822cc5f34717af6732f6d4f682955204f4f27a6aa0a488