[INFO] fetching crate fmlrc 0.1.8...
[INFO] testing fmlrc-0.1.8 against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_with_libc_patch_0
[INFO] extracting crate fmlrc 0.1.8 into /workspace/builds/worker-3-tc1/source
[INFO] started tweaking crates.io crate fmlrc 0.1.8
[INFO] finished tweaking crates.io crate fmlrc 0.1.8
[INFO] tweaked toml for crates.io crate fmlrc 0.1.8 written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate fmlrc 0.1.8 on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate fmlrc 0.1.8 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded needletail v0.4.1
[INFO] [stderr]   Downloaded subprocess v0.2.8
[INFO] [stderr]   Downloaded multimap v0.6.0
[INFO] [stderr]   Downloaded libmath v0.1.4
[INFO] [stderr]   Downloaded xz2 v0.1.6
[INFO] [stderr]   Downloaded statrs v0.12.0
[INFO] [stderr]   Downloaded bio v0.31.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] f3eb4f97909978b147732770ba9d0299dee0fd55d0b86937072ce9da608a6a6c
[INFO] running `Command { std: "docker" "start" "-a" "f3eb4f97909978b147732770ba9d0299dee0fd55d0b86937072ce9da608a6a6c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f3eb4f97909978b147732770ba9d0299dee0fd55d0b86937072ce9da608a6a6c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f3eb4f97909978b147732770ba9d0299dee0fd55d0b86937072ce9da608a6a6c", kill_on_drop: false }`
[INFO] [stdout] f3eb4f97909978b147732770ba9d0299dee0fd55d0b86937072ce9da608a6a6c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] 6b56d4df95e865bc53643b02b7cf1b819e543903f0d5df341d2d56778159ba90
[INFO] running `Command { std: "docker" "start" "-a" "6b56d4df95e865bc53643b02b7cf1b819e543903f0d5df341d2d56778159ba90", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.117
[INFO] [stderr]    Compiling proc-macro2 v1.0.36
[INFO] [stderr]    Compiling unicode-xid v0.2.2
[INFO] [stderr]    Compiling syn v1.0.86
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling memchr v2.4.1
[INFO] [stderr]    Compiling serde_derive v1.0.136
[INFO] [stderr]    Compiling serde v1.0.136
[INFO] [stderr]    Compiling pkg-config v0.3.24
[INFO] [stderr]    Compiling cc v1.0.72
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]    Compiling rustversion v1.0.6
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling unicode-segmentation v1.8.0
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling regex-syntax v0.6.25
[INFO] [stderr]    Compiling crc32fast v1.3.1
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]    Compiling ppv-lite86 v0.2.16
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling adler v1.0.2
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling ryu v1.0.9
[INFO] [stderr]    Compiling regex-automata v0.1.10
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]    Compiling log v0.4.14
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling miniz_oxide v0.4.4
[INFO] [stderr]    Compiling matrixmultiply v0.2.4
[INFO] [stderr]    Compiling either v1.6.1
[INFO] [stderr]    Compiling unicode-width v0.1.9
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling fixedbitset v0.1.9
[INFO] [stderr]    Compiling bytecount v0.6.2
[INFO] [stderr]    Compiling serde_json v1.0.78
[INFO] [stderr]    Compiling byteorder v1.4.3
[INFO] [stderr]    Compiling itoa v0.4.8
[INFO] [stderr]    Compiling ordermap v0.3.5
[INFO] [stderr]    Compiling safemem v0.3.3
[INFO] [stderr]    Compiling bio v0.31.0
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling itertools v0.9.0
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling rand v0.4.6
[INFO] [stderr]    Compiling num_cpus v1.13.1
[INFO] [stderr]    Compiling buf_redux v0.8.4
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling quote v1.0.15
[INFO] [stderr]    Compiling bit-set v0.5.2
[INFO] [stderr]    Compiling petgraph v0.4.13
[INFO] [stderr]    Compiling flate2 v1.0.22
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling humantime v1.3.0
[INFO] [stderr]    Compiling strum v0.18.0
[INFO] [stderr]    Compiling fnv v1.0.7
[INFO] [stderr]    Compiling remove_dir_all v0.5.3
[INFO] [stderr]    Compiling termcolor v1.1.2
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling fastrand v1.7.0
[INFO] [stderr]    Compiling ansi_term v0.12.1
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling itoa v1.0.1
[INFO] [stderr]    Compiling threadpool v1.8.1
[INFO] [stderr]    Compiling rand v0.3.23
[INFO] [stderr]    Compiling tempfile v3.3.0
[INFO] [stderr]    Compiling libmath v0.1.4
[INFO] [stderr]    Compiling subprocess v0.2.8
[INFO] [stderr]    Compiling exitcode v1.1.2
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling ordered-float v1.1.1
[INFO] [stderr]    Compiling statrs v0.12.0
[INFO] [stderr]    Compiling env_logger v0.7.1
[INFO] [stderr]    Compiling bzip2 v0.4.3
[INFO] [stderr]    Compiling thiserror-impl v1.0.30
[INFO] [stderr]    Compiling strum_macros v0.23.1
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling snafu-derive v0.6.10
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling thiserror v1.0.30
[INFO] [stderr]    Compiling bio-types v0.12.1
[INFO] [stderr]    Compiling snafu v0.6.10
[INFO] [stderr]    Compiling xz2 v0.1.6
[INFO] [stderr]    Compiling needletail v0.4.1
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling bstr v0.2.17
[INFO] [stderr]    Compiling multimap v0.6.0
[INFO] [stderr]    Compiling clap v2.34.0
[INFO] [stderr]    Compiling csv v1.1.6
[INFO] [stderr]    Compiling fmlrc v0.1.8 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 36.65s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "6b56d4df95e865bc53643b02b7cf1b819e543903f0d5df341d2d56778159ba90", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6b56d4df95e865bc53643b02b7cf1b819e543903f0d5df341d2d56778159ba90", kill_on_drop: false }`
[INFO] [stdout] 6b56d4df95e865bc53643b02b7cf1b819e543903f0d5df341d2d56778159ba90
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] 2b5013a4d5e6ebba4843d70401385411fd0c484586b0a99873cf4a5233b0c31f
[INFO] running `Command { std: "docker" "start" "-a" "2b5013a4d5e6ebba4843d70401385411fd0c484586b0a99873cf4a5233b0c31f", kill_on_drop: false }`
[INFO] [stderr]    Compiling crossbeam-utils v0.8.6
[INFO] [stderr]    Compiling semver v1.0.4
[INFO] [stderr]    Compiling memoffset v0.6.5
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.6
[INFO] [stderr]    Compiling rayon-core v1.9.1
[INFO] [stderr]    Compiling rayon v1.5.1
[INFO] [stderr]    Compiling plotters-backend v0.3.2
[INFO] [stderr]    Compiling itertools v0.10.3
[INFO] [stderr]    Compiling half v1.8.2
[INFO] [stderr]    Compiling same-file v1.0.6
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling oorandom v11.1.3
[INFO] [stderr]    Compiling walkdir v2.3.2
[INFO] [stderr]    Compiling serde_cbor v0.11.2
[INFO] [stderr]    Compiling plotters-svg v0.3.1
[INFO] [stderr]    Compiling plotters v0.3.1
[INFO] [stderr]    Compiling rustc_version v0.4.0
[INFO] [stderr]    Compiling crossbeam-channel v0.5.2
[INFO] [stderr]    Compiling cast v0.2.7
[INFO] [stderr]    Compiling crossbeam-deque v0.8.1
[INFO] [stderr]    Compiling criterion-plot v0.4.4
[INFO] [stderr]    Compiling criterion v0.3.5
[INFO] [stderr]    Compiling fmlrc v0.1.8 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 15.13s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4, criterion v0.3.5
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2`
[INFO] running `Command { std: "docker" "inspect" "2b5013a4d5e6ebba4843d70401385411fd0c484586b0a99873cf4a5233b0c31f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2b5013a4d5e6ebba4843d70401385411fd0c484586b0a99873cf4a5233b0c31f", kill_on_drop: false }`
[INFO] [stdout] 2b5013a4d5e6ebba4843d70401385411fd0c484586b0a99873cf4a5233b0c31f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] 66e285d75c6aaf15984adbc678f4a1b3e10ec35abcbde37546a7d3cd6d2dca80
[INFO] running `Command { std: "docker" "start" "-a" "66e285d75c6aaf15984adbc678f4a1b3e10ec35abcbde37546a7d3cd6d2dca80", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.16s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4, criterion v0.3.5
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2`
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/fmlrc-8edba1ba0e257d21)
[INFO] [stdout] 
[INFO] [stdout] running 32 tests
[INFO] [stdout] test align::tests::test_wfa_ed ... ok
[INFO] [stdout] test align::tests::test_edit_distance ... ok
[INFO] [stdout] test align::tests::test_edit_distance_minimize ... ok
[INFO] [stdout] test align::tests::test_wfa_minimize ... ok
[INFO] [stdout] test indexed_bit_vec::tests::test_allocation ... ok
[INFO] [stdout] test indexed_bit_vec::tests::test_indexing ... ok
[INFO] [stdout] test bwt_converter::tests::test_newline ... ok
[INFO] [stdout] test indexed_bit_vec::tests::test_set_bit ... ok
[INFO] [stdout] test indexed_bit_vec::tests::test_rank ... ok
[INFO] [stdout] test indexed_bit_vec::tests::test_offset ... ok
[INFO] [stdout] test ordered_fasta_writer::tests::test_fasta_writing ... ok
[INFO] [stdout] test bwt_converter::tests::test_convert_to_vec ... ok
[INFO] [stdout] test bwt_converter::tests::test_save_bwt_numpy ... ok
[INFO] [stdout] test bwt_converter::tests::test_compression ... ok
[INFO] [stdout] test ropebwt2_util::tests::test_from_fastqs ... ignored
[INFO] [stdout] test ropebwt2_util::tests::test_from_strings ... ignored
[INFO] [stdout] test stats_util::tests::test_median ... ok
[INFO] [stdout] test string_util::tests::test_convert_itos ... ok
[INFO] [stdout] test string_util::tests::test_convert_stoi ... ok
[INFO] [stdout] test string_util::tests::test_reverse_complement_i ... ok
[INFO] [stdout] test string_util::tests::test_simple_index ... ok
[INFO] [stdout] test bv_bwt::tests::test_simple_pileup ... ok
[INFO] [stdout] test bv_bwt::tests::test_simple_index ... ok
[INFO] [stdout] test bv_bwt::tests::test_load_from_file has been running for over 60 seconds
[INFO] [stdout] test bwt_converter::tests::test_bwt_conversion has been running for over 60 seconds
[INFO] [stdout] test read_correction::tests::test_assemble has been running for over 60 seconds
[INFO] [stdout] test read_correction::tests::test_bridge has been running for over 60 seconds
[INFO] [stdout] test read_correction::tests::test_correction_deletion_special has been running for over 60 seconds
[INFO] [stdout] test read_correction::tests::test_correction_job has been running for over 60 seconds
[INFO] [stdout] test read_correction::tests::test_correction_pass has been running for over 60 seconds
[INFO] [stdout] test read_correction::tests::test_diploid_correction_pass has been running for over 60 seconds
[INFO] [stdout] test read_correction::tests::test_expansion_bridge has been running for over 60 seconds
[ERROR] error running command: no output for 300 seconds
[INFO] running `Command { std: "docker" "inspect" "66e285d75c6aaf15984adbc678f4a1b3e10ec35abcbde37546a7d3cd6d2dca80", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "66e285d75c6aaf15984adbc678f4a1b3e10ec35abcbde37546a7d3cd6d2dca80", kill_on_drop: false }`
[INFO] [stdout] 66e285d75c6aaf15984adbc678f4a1b3e10ec35abcbde37546a7d3cd6d2dca80