[INFO] fetching crate deepbiop-utils 0.1.15... [INFO] testing deepbiop-utils-0.1.15 against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_with_libc_patch_0 [INFO] extracting crate deepbiop-utils 0.1.15 into /workspace/builds/worker-4-tc1/source [INFO] started tweaking crates.io crate deepbiop-utils 0.1.15 [INFO] finished tweaking crates.io crate deepbiop-utils 0.1.15 [INFO] tweaked toml for crates.io crate deepbiop-utils 0.1.15 written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate deepbiop-utils 0.1.15 on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate deepbiop-utils 0.1.15 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded pyo3-stub-gen-derive v0.6.2 [INFO] [stderr] Downloaded pyo3-macros v0.23.4 [INFO] [stderr] Downloaded pyo3-stub-gen v0.6.2 [INFO] [stderr] Downloaded pyo3-macros-backend v0.23.4 [INFO] [stderr] Downloaded noodles-core v0.15.0 [INFO] [stderr] Downloaded pyo3-build-config v0.23.4 [INFO] [stderr] Downloaded liblzma v0.3.5 [INFO] [stderr] Downloaded arrow-arith v54.0.0 [INFO] [stderr] Downloaded arrow-json v54.0.0 [INFO] [stderr] Downloaded arrow v54.0.0 [INFO] [stderr] Downloaded arrow-cast v54.0.0 [INFO] [stderr] Downloaded noodles-sam v0.68.0 [INFO] [stderr] Downloaded arrow-ipc v54.0.0 [INFO] [stderr] Downloaded arrow-buffer v54.0.0 [INFO] [stderr] Downloaded arrow-data v54.0.0 [INFO] [stderr] Downloaded numpy v0.23.0 [INFO] [stderr] Downloaded pyo3-ffi v0.23.4 [INFO] [stderr] Downloaded arrow-array v54.0.0 [INFO] [stderr] Downloaded noodles-bam v0.72.0 [INFO] [stderr] Downloaded noodles-bgzf v0.34.0 [INFO] [stderr] Downloaded noodles-csi v0.41.0 [INFO] [stderr] Downloaded arrow-schema v54.0.0 [INFO] [stderr] Downloaded arrow-select v54.0.0 [INFO] [stderr] Downloaded arrow-csv v54.0.0 [INFO] [stderr] Downloaded arrow-ord v54.0.0 [INFO] [stderr] Downloaded arrow-row v54.0.0 [INFO] [stderr] Downloaded arrow-string v54.0.0 [INFO] [stderr] Downloaded noodles-fasta v0.46.0 [INFO] [stderr] Downloaded needletail v0.6.1 [INFO] [stderr] Downloaded noodles-fastq v0.16.0 [INFO] [stderr] Downloaded noodles v0.87.0 [INFO] [stderr] Downloaded libz-ng-sys v1.1.21 [INFO] [stderr] Downloaded parquet v54.0.0 [INFO] [stderr] Downloaded pyo3 v0.23.4 [INFO] [stderr] Downloaded liblzma-sys v0.3.11 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 18713e9f6f588dbcdf7327b8188c31a43679bf4c1cdd4adda24ad8ad1f7d7ed7 [INFO] running `Command { std: "docker" "start" "-a" "18713e9f6f588dbcdf7327b8188c31a43679bf4c1cdd4adda24ad8ad1f7d7ed7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "18713e9f6f588dbcdf7327b8188c31a43679bf4c1cdd4adda24ad8ad1f7d7ed7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "18713e9f6f588dbcdf7327b8188c31a43679bf4c1cdd4adda24ad8ad1f7d7ed7", kill_on_drop: false }` [INFO] [stdout] 18713e9f6f588dbcdf7327b8188c31a43679bf4c1cdd4adda24ad8ad1f7d7ed7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 50aea92a85b5826abc481d9ebbf92babf6e762986ad2b30f57b47e63171c58e7 [INFO] running `Command { std: "docker" "start" "-a" "50aea92a85b5826abc481d9ebbf92babf6e762986ad2b30f57b47e63171c58e7", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.169 [INFO] [stderr] Compiling unicode-ident v1.0.14 [INFO] [stderr] Compiling bytes v1.9.0 [INFO] [stderr] Compiling target-lexicon v0.12.16 [INFO] [stderr] Compiling once_cell v1.20.2 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling ahash v0.8.11 [INFO] [stderr] Compiling lexical-util v1.0.6 [INFO] [stderr] Compiling iana-time-zone v0.1.61 [INFO] [stderr] Compiling arrow-schema v54.0.0 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling miniz_oxide v0.8.3 [INFO] [stderr] Compiling semver v1.0.25 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling crossbeam-channel v0.5.14 [INFO] [stderr] Compiling proc-macro2 v1.0.93 [INFO] [stderr] Compiling memoffset v0.9.1 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling zstd-safe v7.2.1 [INFO] [stderr] Compiling serde_json v1.0.137 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling alloc-no-stdlib v2.0.4 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling alloc-stdlib v0.2.2 [INFO] [stderr] Compiling lexical-write-integer v1.0.5 [INFO] [stderr] Compiling quote v1.0.38 [INFO] [stderr] Compiling lexical-parse-integer v1.0.5 [INFO] [stderr] Compiling anyhow v1.0.95 [INFO] [stderr] Compiling indoc v2.0.5 [INFO] [stderr] Compiling unindent v0.2.3 [INFO] [stderr] Compiling lexical-parse-float v1.0.5 [INFO] [stderr] Compiling winnow v0.6.24 [INFO] [stderr] Compiling syn v2.0.96 [INFO] [stderr] Compiling jobserver v0.1.32 [INFO] [stderr] Compiling lexical-write-float v1.0.5 [INFO] [stderr] Compiling rustc_version v0.4.1 [INFO] [stderr] Compiling snap v1.1.1 [INFO] [stderr] Compiling brotli-decompressor v4.0.2 [INFO] [stderr] Compiling twox-hash v1.6.3 [INFO] [stderr] Compiling integer-encoding v3.0.4 [INFO] [stderr] Compiling rustc-hash v2.1.0 [INFO] [stderr] Compiling pyo3-build-config v0.23.4 [INFO] [stderr] Compiling cc v1.2.10 [INFO] [stderr] Compiling itertools v0.13.0 [INFO] [stderr] Compiling lexical-core v1.0.5 [INFO] [stderr] Compiling buffer-redux v1.0.2 [INFO] [stderr] Compiling maplit v1.0.2 [INFO] [stderr] Compiling lz4_flex v0.11.3 [INFO] [stderr] Compiling flatbuffers v24.12.23 [INFO] [stderr] Compiling seq-macro v0.3.5 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling half v2.4.1 [INFO] [stderr] Compiling chrono v0.4.39 [INFO] [stderr] Compiling atoi v2.0.0 [INFO] [stderr] Compiling ordered-float v2.10.1 [INFO] [stderr] Compiling log v0.4.25 [INFO] [stderr] Compiling bytecount v0.6.8 [INFO] [stderr] Compiling unicode-linebreak v0.1.5 [INFO] [stderr] Compiling inventory v0.3.17 [INFO] [stderr] Compiling num-bigint v0.4.6 [INFO] [stderr] Compiling num-iter v0.1.45 [INFO] [stderr] Compiling thrift v0.17.0 [INFO] [stderr] Compiling smawk v0.3.2 [INFO] [stderr] Compiling tempfile v3.15.0 [INFO] [stderr] Compiling ndarray v0.16.1 [INFO] [stderr] Compiling lexical v7.0.4 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling colored v3.0.0 [INFO] [stderr] Compiling brotli v7.0.0 [INFO] [stderr] Compiling cmake v0.1.52 [INFO] [stderr] Compiling textwrap v0.16.1 [INFO] [stderr] Compiling bstr v1.11.3 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling libz-ng-sys v1.1.21 [INFO] [stderr] Compiling zstd-sys v2.0.13+zstd.1.5.6 [INFO] [stderr] Compiling liblzma-sys v0.3.11 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling pyo3-ffi v0.23.4 [INFO] [stderr] Compiling pyo3-macros-backend v0.23.4 [INFO] [stderr] Compiling pyo3 v0.23.4 [INFO] [stderr] Compiling noodles-core v0.15.0 [INFO] [stderr] Compiling noodles-fastq v0.16.0 [INFO] [stderr] Compiling num v0.4.3 [INFO] [stderr] Compiling arrow-buffer v54.0.0 [INFO] [stderr] Compiling arrow-data v54.0.0 [INFO] [stderr] Compiling bzip2 v0.4.4 [INFO] [stderr] Compiling darling_core v0.20.10 [INFO] [stderr] Compiling arrow-array v54.0.0 [INFO] [stderr] Compiling liblzma v0.3.5 [INFO] [stderr] Compiling serde_derive v1.0.217 [INFO] [stderr] Compiling pyo3-stub-gen-derive v0.6.2 [INFO] [stderr] Compiling darling_macro v0.20.10 [INFO] [stderr] Compiling arrow-select v54.0.0 [INFO] [stderr] Compiling arrow-ipc v54.0.0 [INFO] [stderr] Compiling arrow-row v54.0.0 [INFO] [stderr] Compiling arrow-arith v54.0.0 [INFO] [stderr] Compiling darling v0.20.10 [INFO] [stderr] Compiling derive_builder_core v0.20.2 [INFO] [stderr] Compiling arrow-cast v54.0.0 [INFO] [stderr] Compiling arrow-string v54.0.0 [INFO] [stderr] Compiling arrow-ord v54.0.0 [INFO] [stderr] Compiling zstd v0.13.2 [INFO] [stderr] Compiling derive_builder_macro v0.20.2 [INFO] [stderr] Compiling pyo3-macros v0.23.4 [INFO] [stderr] Compiling derive_builder v0.20.2 [INFO] [stderr] Compiling serde v1.0.217 [INFO] [stderr] Compiling numpy v0.23.0 [INFO] [stderr] Compiling toml_datetime v0.6.8 [INFO] [stderr] Compiling serde_spanned v0.6.8 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling toml_edit v0.22.22 [INFO] [stderr] Compiling arrow-csv v54.0.0 [INFO] [stderr] Compiling flate2 v1.0.35 [INFO] [stderr] Compiling noodles-bgzf v0.34.0 [INFO] [stderr] Compiling parquet v54.0.0 [INFO] [stderr] Compiling arrow-json v54.0.0 [INFO] [stderr] Compiling needletail v0.6.1 [INFO] [stderr] Compiling noodles-csi v0.41.0 [INFO] [stderr] Compiling noodles-fasta v0.46.0 [INFO] [stderr] Compiling arrow v54.0.0 [INFO] [stderr] Compiling noodles-sam v0.68.0 [INFO] [stderr] Compiling toml v0.8.19 [INFO] [stderr] Compiling pyo3-stub-gen v0.6.2 [INFO] [stderr] Compiling noodles-bam v0.72.0 [INFO] [stderr] Compiling noodles v0.87.0 [INFO] [stderr] Compiling deepbiop-utils v0.1.15 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 07s [INFO] running `Command { std: "docker" "inspect" "50aea92a85b5826abc481d9ebbf92babf6e762986ad2b30f57b47e63171c58e7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "50aea92a85b5826abc481d9ebbf92babf6e762986ad2b30f57b47e63171c58e7", kill_on_drop: false }` [INFO] [stdout] 50aea92a85b5826abc481d9ebbf92babf6e762986ad2b30f57b47e63171c58e7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 33cf379875e0fde3ef750ac6a22138e28ab68ec9eaff334a9096c1c0fc78b39d [INFO] running `Command { std: "docker" "start" "-a" "33cf379875e0fde3ef750ac6a22138e28ab68ec9eaff334a9096c1c0fc78b39d", kill_on_drop: false }` [INFO] [stderr] Compiling deepbiop-utils v0.1.15 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 8.55s [INFO] running `Command { std: "docker" "inspect" "33cf379875e0fde3ef750ac6a22138e28ab68ec9eaff334a9096c1c0fc78b39d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "33cf379875e0fde3ef750ac6a22138e28ab68ec9eaff334a9096c1c0fc78b39d", kill_on_drop: false }` [INFO] [stdout] 33cf379875e0fde3ef750ac6a22138e28ab68ec9eaff334a9096c1c0fc78b39d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 591e9a4cd3871a11223a822ea1cc00aded67e05bab7eb4e626a640f6545d81b2 [INFO] running `Command { std: "docker" "start" "-a" "591e9a4cd3871a11223a822ea1cc00aded67e05bab7eb4e626a640f6545d81b2", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.26s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/deepbiop_utils-5d66a59165f2886f) [INFO] [stdout] [INFO] [stdout] running 17 tests [INFO] [stdout] test interval::genomics::tests::test_segment ... ok [INFO] [stdout] test interval::op::tests::test_generate_unmaped_intervals ... ok [INFO] [stdout] test interval::traits::tests::test_overlap_for_range ... ok [INFO] [stdout] test io::tests::test_real_example ... ok [INFO] [stdout] test blat::tests::test_parse_psl ... ok [INFO] [stdout] test io::tests::test_is_compressed ... ok [INFO] [stdout] test sv::tests::test_structural_variant_from_str ... ok [INFO] [stdout] test sv::tests::test_structural_variant_builder ... ok [INFO] [stdout] test sv::tests::test_structural_variant_type_from_str ... ok [INFO] [stdout] test io::tests::test_check_file_type ... ok [INFO] [stdout] test tests::test_highlight ... ok [INFO] [stdout] test sv::tests::test_structural_variant_from_str_invalid_format ... ok [INFO] [stdout] test strategy::tests::test_majority_voting_empty_labels ... ok [INFO] [stdout] test strategy::tests::test_majority_voting_small_window ... ok [INFO] [stdout] test strategy::tests::test_majority_voting2 ... ok [INFO] [stdout] test interval::op::tests::test_remove_intervals_and_keep_left ... ok [INFO] [stdout] test strategy::tests::test_majority_voting ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 17 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "591e9a4cd3871a11223a822ea1cc00aded67e05bab7eb4e626a640f6545d81b2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "591e9a4cd3871a11223a822ea1cc00aded67e05bab7eb4e626a640f6545d81b2", kill_on_drop: false }` [INFO] [stdout] 591e9a4cd3871a11223a822ea1cc00aded67e05bab7eb4e626a640f6545d81b2