[INFO] fetching crate chainfile 0.3.0...
[INFO] testing chainfile-0.3.0 against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_with_libc_patch_0
[INFO] extracting crate chainfile 0.3.0 into /workspace/builds/worker-3-tc1/source
[INFO] started tweaking crates.io crate chainfile 0.3.0
[INFO] removed 0 missing examples
[INFO] finished tweaking crates.io crate chainfile 0.3.0
[INFO] tweaked toml for crates.io crate chainfile 0.3.0 written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate chainfile 0.3.0 on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate chainfile 0.3.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded wasm-bindgen-macro v0.2.94
[INFO] [stderr]   Downloaded wasm-bindgen-macro-support v0.2.94
[INFO] [stderr]   Downloaded tabled_derive v0.8.0
[INFO] [stderr]   Downloaded noodles-core v0.15.0
[INFO] [stderr]   Downloaded omics v0.2.0
[INFO] [stderr]   Downloaded wasm-bindgen-shared v0.2.94
[INFO] [stderr]   Downloaded omics-core v0.1.0
[INFO] [stderr]   Downloaded thiserror-impl v2.0.9
[INFO] [stderr]   Downloaded wasm-bindgen-futures v0.4.44
[INFO] [stderr]   Downloaded clap-verbosity-flag v2.2.2
[INFO] [stderr]   Downloaded noodles-bgzf v0.34.0
[INFO] [stderr]   Downloaded omics-coordinate v0.2.0
[INFO] [stderr]   Downloaded js-sys v0.3.71
[INFO] [stderr]   Downloaded cc v1.1.28
[INFO] [stderr]   Downloaded schannel v0.1.26
[INFO] [stderr]   Downloaded wasm-bindgen-backend v0.2.94
[INFO] [stderr]   Downloaded papergrid v0.12.0
[INFO] [stderr]   Downloaded tabled v0.16.0
[INFO] [stderr]   Downloaded rust-lapper v1.1.0
[INFO] [stderr]   Downloaded h2 v0.4.6
[INFO] [stderr]   Downloaded noodles-fasta v0.46.0
[INFO] [stderr]   Downloaded noodles v0.87.0
[INFO] [stderr]   Downloaded thiserror v2.0.9
[INFO] [stderr]   Downloaded nonempty v0.9.0
[INFO] [stderr]   Downloaded wasm-bindgen v0.2.94
[INFO] [stderr]   Downloaded weighted_rand v0.4.2
[INFO] [stderr]   Downloaded rustls v0.23.14
[INFO] [stderr]   Downloaded bstr v1.11.3
[INFO] [stderr]   Downloaded web-sys v0.3.71
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 9d1b09a02d3e717add0b1f84b801c5e6d6b6061f5a5aa8b199457a4e59394db9
[INFO] running `Command { std: "docker" "start" "-a" "9d1b09a02d3e717add0b1f84b801c5e6d6b6061f5a5aa8b199457a4e59394db9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "9d1b09a02d3e717add0b1f84b801c5e6d6b6061f5a5aa8b199457a4e59394db9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9d1b09a02d3e717add0b1f84b801c5e6d6b6061f5a5aa8b199457a4e59394db9", kill_on_drop: false }`
[INFO] [stdout] 9d1b09a02d3e717add0b1f84b801c5e6d6b6061f5a5aa8b199457a4e59394db9
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] fcb3e41529b8c71580147f5d737efc709125e9d5a893dec709c70010f90f0966
[INFO] running `Command { std: "docker" "start" "-a" "fcb3e41529b8c71580147f5d737efc709125e9d5a893dec709c70010f90f0966", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.92
[INFO] [stderr]    Compiling unicode-ident v1.0.13
[INFO] [stderr]    Compiling thiserror v2.0.9
[INFO] [stderr]    Compiling adler2 v2.0.0
[INFO] [stderr]    Compiling once_cell v1.20.2
[INFO] [stderr]    Compiling omics-core v0.1.0
[INFO] [stderr]    Compiling log v0.4.22
[INFO] [stderr]    Compiling nonempty v0.9.0
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling crc32fast v1.4.2
[INFO] [stderr]    Compiling miniz_oxide v0.8.0
[INFO] [stderr]    Compiling tracing-core v0.1.32
[INFO] [stderr]    Compiling flate2 v1.0.34
[INFO] [stderr]    Compiling quote v1.0.37
[INFO] [stderr]    Compiling syn v2.0.94
[INFO] [stderr]    Compiling tracing-log v0.2.0
[INFO] [stderr]    Compiling rust-lapper v1.1.0
[INFO] [stderr]    Compiling thiserror-impl v2.0.9
[INFO] [stderr]    Compiling omics-coordinate v0.2.0
[INFO] [stderr]    Compiling omics v0.2.0
[INFO] [stderr]    Compiling chainfile v0.3.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 7.51s
[INFO] running `Command { std: "docker" "inspect" "fcb3e41529b8c71580147f5d737efc709125e9d5a893dec709c70010f90f0966", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fcb3e41529b8c71580147f5d737efc709125e9d5a893dec709c70010f90f0966", kill_on_drop: false }`
[INFO] [stdout] fcb3e41529b8c71580147f5d737efc709125e9d5a893dec709c70010f90f0966
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] c6052e53a08f6617d39d989f9d31dfbcd44caf752142e700f528009095629ed6
[INFO] running `Command { std: "docker" "start" "-a" "c6052e53a08f6617d39d989f9d31dfbcd44caf752142e700f528009095629ed6", kill_on_drop: false }`
[INFO] [stderr]    Compiling crossbeam-utils v0.8.20
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling bytes v1.7.2
[INFO] [stderr]    Compiling unicode-width v0.1.11
[INFO] [stderr]    Compiling bstr v1.11.3
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling bytecount v0.6.8
[INFO] [stderr]    Compiling papergrid v0.12.0
[INFO] [stderr]    Compiling noodles-core v0.15.0
[INFO] [stderr]    Compiling crossbeam-channel v0.5.13
[INFO] [stderr]    Compiling noodles-bgzf v0.34.0
[INFO] [stderr]    Compiling noodles-fasta v0.46.0
[INFO] [stderr]    Compiling noodles v0.87.0
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling tabled_derive v0.8.0
[INFO] [stderr]    Compiling tabled v0.16.0
[INFO] [stderr]    Compiling chainfile v0.3.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 12.74s
[INFO] running `Command { std: "docker" "inspect" "c6052e53a08f6617d39d989f9d31dfbcd44caf752142e700f528009095629ed6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c6052e53a08f6617d39d989f9d31dfbcd44caf752142e700f528009095629ed6", kill_on_drop: false }`
[INFO] [stdout] c6052e53a08f6617d39d989f9d31dfbcd44caf752142e700f528009095629ed6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] 64d8509be4dd4e5c3e1f35aae62b6d047ab1fb803acd3f7d7072b3bbb492114b
[INFO] running `Command { std: "docker" "start" "-a" "64d8509be4dd4e5c3e1f35aae62b6d047ab1fb803acd3f7d7072b3bbb492114b", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.15s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/chainfile-d98a476d40bb9691)
[INFO] [stdout] 
[INFO] [stdout] running 52 tests
[INFO] [stdout] test alignment::section::builder::tests::fails_with_no_data ... ok
[INFO] [stdout] test alignment::section::builder::tests::fails_with_multiple_headers ... ok
[INFO] [stdout] test alignment::section::builder::tests::fails_with_no_header ... ok
[INFO] [stdout] test alignment::section::data::tests::invalid_dt ... ok
[INFO] [stdout] test alignment::section::data::tests::invalid_nonterminating_dq ... ok
[INFO] [stdout] test alignment::section::data::tests::invalid_dq ... ok
[INFO] [stdout] test alignment::section::data::tests::invalid_nonterminating_dt ... ok
[INFO] [stdout] test alignment::section::data::tests::invalid_number_of_fields ... ok
[INFO] [stdout] test alignment::section::data::tests::invalid_size ... ok
[INFO] [stdout] test alignment::section::data::tests::invalid_terminating_dq ... ok
[INFO] [stdout] test alignment::section::data::tests::invalid_terminating_dt ... ok
[INFO] [stdout] test alignment::section::data::tests::nonterminating_alignment_data ... ok
[INFO] [stdout] test alignment::section::data::tests::nonterminating_alignment_data_display ... ok
[INFO] [stdout] test alignment::section::data::tests::terminating_alignment_data ... ok
[INFO] [stdout] test alignment::section::header::sequence::tests::display ... ok
[INFO] [stdout] test alignment::section::header::sequence::tests::invalid_alignment_end ... ok
[INFO] [stdout] test alignment::section::header::sequence::tests::invalid_alignment_start ... ok
[INFO] [stdout] test alignment::section::header::sequence::tests::invalid_chromosome_size ... ok
[INFO] [stdout] test alignment::section::header::sequence::tests::invalid_strand ... ok
[INFO] [stdout] test alignment::section::header::sequence::tests::try_new ... ok
[INFO] [stdout] test alignment::section::header::tests::display ... ok
[INFO] [stdout] test alignment::section::header::tests::end_is_greater_than_size_query ... ok
[INFO] [stdout] test alignment::section::header::tests::end_is_greater_than_size_reference ... ok
[INFO] [stdout] test alignment::section::header::tests::incorrect_number_of_fields ... ok
[INFO] [stdout] test alignment::section::header::tests::invalid_prefix ... ok
[INFO] [stdout] test alignment::section::header::tests::invalid_query_sequence ... ok
[INFO] [stdout] test alignment::section::header::tests::invalid_reference_sequence ... ok
[INFO] [stdout] test alignment::section::header::tests::invalid_score ... ok
[INFO] [stdout] test alignment::section::header::tests::parse ... ok
[INFO] [stdout] test alignment::section::tests::test_invalid_sections_abrupt_end_in_section ... ok
[INFO] [stdout] test alignment::section::tests::test_invalid_sections_alignment_data_between_sections ... ok
[INFO] [stdout] test alignment::section::data::tests::terminating_alignment_data_display ... ok
[INFO] [stdout] test alignment::section::header::tests::invalid_id ... ok
[INFO] [stdout] test alignment::section::tests::test_invalid_sections_header_in_section ... ok
[INFO] [stdout] test alignment::section::tests::test_valid_sections ... ok
[INFO] [stdout] test liftover::machine::tests::test_nonexistent_negative_strand_interval_liftover ... ok
[INFO] [stdout] test liftover::machine::tests::test_nonexistent_positive_strand_interval_liftover ... ok
[INFO] [stdout] test liftover::stepthrough::tests::test_it_correctly_steps_through_a_valid_chain_file ... ok
[INFO] [stdout] test liftover::machine::tests::test_valid_positive_strand_liftover ... ok
[INFO] [stdout] test liftover::machine::tests::test_valid_negative_strand_liftover ... ok
[INFO] [stdout] test liftover::stepthrough::tests::test_it_errors_when_there_is_an_alignment_issue ... ok
[INFO] [stdout] test line::tests::invalid_alignment_data_line ... ok
[INFO] [stdout] test line::tests::invalid_header_line ... ok
[INFO] [stdout] test alignment::section::tests::test_invalid_sections_blank_line_in_section ... ok
[INFO] [stdout] test liftover::machine::tests::test_valid_negative_to_positive_strand_liftover ... ok
[INFO] [stdout] test liftover::stepthrough::interval_pair::tests::interval_sizes_dont_match ... ok
[INFO] [stdout] test liftover::stepthrough::interval_pair::tests::valid_interval_pair ... ok
[INFO] [stdout] test line::tests::valid_nonterminating_alignment_data_line ... ok
[INFO] [stdout] test liftover::machine::tests::test_valid_positive_to_negative_strand_liftover ... ok
[INFO] [stdout] test line::tests::valid_header_line ... ok
[INFO] [stdout] test line::tests::valid_terminating_alignment_data_line ... ok
[INFO] [stdout] test reader::tests::test_read_line ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 52 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "64d8509be4dd4e5c3e1f35aae62b6d047ab1fb803acd3f7d7072b3bbb492114b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "64d8509be4dd4e5c3e1f35aae62b6d047ab1fb803acd3f7d7072b3bbb492114b", kill_on_drop: false }`
[INFO] [stdout] 64d8509be4dd4e5c3e1f35aae62b6d047ab1fb803acd3f7d7072b3bbb492114b