[INFO] fetching crate biotools 1.1.0...
[INFO] testing biotools-1.1.0 against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_with_libc_patch_0
[INFO] extracting crate biotools 1.1.0 into /workspace/builds/worker-3-tc1/source
[INFO] started tweaking crates.io crate biotools 1.1.0
[INFO] finished tweaking crates.io crate biotools 1.1.0
[INFO] tweaked toml for crates.io crate biotools 1.1.0 written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate biotools 1.1.0 on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate biotools 1.1.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded ordered-float v4.5.0
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded wide v0.7.30
[INFO] [stderr]   Downloaded bio v2.0.3
[INFO] [stderr]   Downloaded statrs v0.17.1
[INFO] [stderr]   Downloaded ndarray v0.16.1
[INFO] [stderr]   Downloaded nalgebra v0.32.6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] fd50cc9396158dfda71a4afab9ed529e8b81c9eb6f0d1b5cff3bb981e0fa102a
[INFO] running `Command { std: "docker" "start" "-a" "fd50cc9396158dfda71a4afab9ed529e8b81c9eb6f0d1b5cff3bb981e0fa102a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "fd50cc9396158dfda71a4afab9ed529e8b81c9eb6f0d1b5cff3bb981e0fa102a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fd50cc9396158dfda71a4afab9ed529e8b81c9eb6f0d1b5cff3bb981e0fa102a", kill_on_drop: false }`
[INFO] [stdout] fd50cc9396158dfda71a4afab9ed529e8b81c9eb6f0d1b5cff3bb981e0fa102a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] b9ab2e61821800e78908f9f5815278e834b7af8c1e14677fbfa8107f3aeabcb6
[INFO] running `Command { std: "docker" "start" "-a" "b9ab2e61821800e78908f9f5815278e834b7af8c1e14677fbfa8107f3aeabcb6", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.92
[INFO] [stderr]    Compiling unicode-ident v1.0.14
[INFO] [stderr]    Compiling libc v0.2.168
[INFO] [stderr]    Compiling serde v1.0.216
[INFO] [stderr]    Compiling bytemuck v1.20.0
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling rustversion v1.0.18
[INFO] [stderr]    Compiling typenum v1.17.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling matrixmultiply v0.3.9
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling hashbrown v0.15.2
[INFO] [stderr]    Compiling anyhow v1.0.94
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling equivalent v1.0.1
[INFO] [stderr]    Compiling csv-core v0.1.11
[INFO] [stderr]    Compiling ryu v1.0.18
[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling clap_builder v4.5.23
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling safe_arch v0.7.2
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling bit-set v0.8.0
[INFO] [stderr]    Compiling ordered-float v4.5.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling strum v0.26.3
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling bytecount v0.6.8
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling quote v1.0.37
[INFO] [stderr]    Compiling wide v0.7.30
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling syn v2.0.90
[INFO] [stderr]    Compiling indexmap v2.7.0
[INFO] [stderr]    Compiling getrandom v0.2.15
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling petgraph v0.6.5
[INFO] [stderr]    Compiling simba v0.8.1
[INFO] [stderr]    Compiling zerocopy-derive v0.7.35
[INFO] [stderr]    Compiling serde_derive v1.0.216
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling nalgebra-macros v0.2.2
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling clap_derive v4.5.18
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling zerocopy v0.7.35
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling clap v4.5.23
[INFO] [stderr]    Compiling ppv-lite86 v0.2.20
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling nalgebra v0.32.6
[INFO] [stderr]    Compiling csv v1.3.1
[INFO] [stderr]    Compiling multimap v0.10.0
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling statrs v0.17.1
[INFO] [stderr]    Compiling bio v2.0.3
[INFO] [stderr]    Compiling biotools v1.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 39.91s
[INFO] running `Command { std: "docker" "inspect" "b9ab2e61821800e78908f9f5815278e834b7af8c1e14677fbfa8107f3aeabcb6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b9ab2e61821800e78908f9f5815278e834b7af8c1e14677fbfa8107f3aeabcb6", kill_on_drop: false }`
[INFO] [stdout] b9ab2e61821800e78908f9f5815278e834b7af8c1e14677fbfa8107f3aeabcb6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] 1eb1212c30f3768e002ca4dd89c56327160107ca92e24de7bf1b630bab9d922c
[INFO] running `Command { std: "docker" "start" "-a" "1eb1212c30f3768e002ca4dd89c56327160107ca92e24de7bf1b630bab9d922c", kill_on_drop: false }`
[INFO] [stderr]    Compiling biotools v1.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 3.09s
[INFO] running `Command { std: "docker" "inspect" "1eb1212c30f3768e002ca4dd89c56327160107ca92e24de7bf1b630bab9d922c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1eb1212c30f3768e002ca4dd89c56327160107ca92e24de7bf1b630bab9d922c", kill_on_drop: false }`
[INFO] [stdout] 1eb1212c30f3768e002ca4dd89c56327160107ca92e24de7bf1b630bab9d922c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] 7baa71735ec8178397a5f163c445131cccb770f93c191863b2e1b6c2a6a9b526
[INFO] running `Command { std: "docker" "start" "-a" "7baa71735ec8178397a5f163c445131cccb770f93c191863b2e1b6c2a6a9b526", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.17s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/biotools-3b05b7336529d50a)
[INFO] [stdout] 
[INFO] [stdout] running 18 tests
[INFO] [stdout] test tests::test_compute_gc_content_0 ... ok
[INFO] [stdout] test tests::test_compute_gc_content_25 ... ok
[INFO] [stdout] test tests::test_compute_gc_content_50 ... ok
[INFO] [stdout] test tests::test_compute_gc_content_100 ... ok
[INFO] [stdout] test tests::test_compute_gc_content_75 ... ok
[INFO] [stdout] test tests::test_gc_content ... ok
[INFO] [stdout] test tests::test_length ... ok
[INFO] [stdout] test tests::test_length_gaps ... ok
[INFO] [stdout] test tests::test_length_spaces ... ok
[INFO] [stdout] test tests::test_pairwise_semiglobal ... ok
[INFO] [stdout] test tests::test_pairwise_local ... ok
[INFO] [stdout] test tests::test_pairwise_semiglobal_high_gap_penalties ... ok
[INFO] [stdout] test tests::test_pairwise_semiglobal_hide_coords ... ok
[INFO] [stdout] test tests::test_pairwise_global ... ok
[INFO] [stdout] test tests::test_pairwise_semiglobal_tryrc ... ok
[INFO] [stdout] test tests::test_reverse_complement ... ok
[INFO] [stdout] test tests::test_reverse_complement_with_pairwise_cruft ... ok
[INFO] [stdout] test tests::test_pairwise_semiglobal_zero_gap_penalties ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 18 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "7baa71735ec8178397a5f163c445131cccb770f93c191863b2e1b6c2a6a9b526", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7baa71735ec8178397a5f163c445131cccb770f93c191863b2e1b6c2a6a9b526", kill_on_drop: false }`
[INFO] [stdout] 7baa71735ec8178397a5f163c445131cccb770f93c191863b2e1b6c2a6a9b526