[INFO] fetching crate bio 2.3.0... [INFO] testing bio-2.3.0 against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_with_libc_patch_0 [INFO] extracting crate bio 2.3.0 into /workspace/builds/worker-2-tc1/source [INFO] started tweaking crates.io crate bio 2.3.0 [INFO] finished tweaking crates.io crate bio 2.3.0 [INFO] tweaked toml for crates.io crate bio 2.3.0 written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate bio 2.3.0 on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate bio 2.3.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded bytecount v0.6.8 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded safe_arch v0.7.4 [INFO] [stderr] Downloaded wide v0.7.32 [INFO] [stderr] Downloaded statrs v0.18.0 [INFO] [stderr] Downloaded simba v0.9.0 [INFO] [stderr] Downloaded nalgebra v0.33.2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 78a1ffba7965ed4f887409bd76a1ceaa23420a363a43f18098effb2c16e82d75 [INFO] running `Command { std: "docker" "start" "-a" "78a1ffba7965ed4f887409bd76a1ceaa23420a363a43f18098effb2c16e82d75", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "78a1ffba7965ed4f887409bd76a1ceaa23420a363a43f18098effb2c16e82d75", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "78a1ffba7965ed4f887409bd76a1ceaa23420a363a43f18098effb2c16e82d75", kill_on_drop: false }` [INFO] [stdout] 78a1ffba7965ed4f887409bd76a1ceaa23420a363a43f18098effb2c16e82d75 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] d73ed2836577b62c897b9c8be8a87058fb9689739334cab438d7892c35ecbab6 [INFO] running `Command { std: "docker" "start" "-a" "d73ed2836577b62c897b9c8be8a87058fb9689739334cab438d7892c35ecbab6", kill_on_drop: false }` [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling libc v0.2.172 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling bytemuck v1.23.0 [INFO] [stderr] Compiling syn v2.0.101 [INFO] [stderr] Compiling paste v1.0.15 [INFO] [stderr] Compiling typenum v1.18.0 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling allocator-api2 v0.2.21 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling wide v0.7.32 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling getrandom v0.2.16 [INFO] [stderr] Compiling foldhash v0.1.5 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling hashbrown v0.15.3 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling anyhow v1.0.98 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling indexmap v2.9.0 [INFO] [stderr] Compiling csv-core v0.1.12 [INFO] [stderr] Compiling ryu v1.0.20 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Compiling fixedbitset v0.5.7 [INFO] [stderr] Compiling itoa v1.0.15 [INFO] [stderr] Compiling itertools v0.14.0 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling petgraph v0.8.1 [INFO] [stderr] Compiling ndarray v0.16.1 [INFO] [stderr] Compiling ordered-float v5.0.0 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling strum v0.26.3 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling bytecount v0.6.8 [INFO] [stderr] Compiling simba v0.9.0 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling thiserror v2.0.12 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling nalgebra v0.33.2 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling multimap v0.10.1 [INFO] [stderr] Compiling statrs v0.18.0 [INFO] [stderr] Compiling bio v2.3.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unexpected `cfg` condition name: `tests` [INFO] [stdout] --> src/data_structures/smallints.rs:198:7 [INFO] [stdout] | [INFO] [stdout] 198 | #[cfg(tests)] [INFO] [stdout] | ^^^^^ help: there is a config with a similar name: `test` [INFO] [stdout] | [INFO] [stdout] = help: consider using a Cargo feature instead [INFO] [stdout] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stdout] [lints.rust] [INFO] [stdout] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(tests)'] } [INFO] [stdout] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(tests)");` to the top of the `build.rs` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition name: `has_u128` [INFO] [stdout] --> src/pattern_matching/myers/builder.rs:134:11 [INFO] [stdout] | [INFO] [stdout] 134 | #[cfg(has_u128)] [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: expected names are: `docsrs`, `feature`, and `test` and 31 more [INFO] [stdout] = help: consider using a Cargo feature instead [INFO] [stdout] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stdout] [lints.rust] [INFO] [stdout] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(has_u128)'] } [INFO] [stdout] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(has_u128)");` to the top of the `build.rs` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition name: `has_u128` [INFO] [stdout] --> src/pattern_matching/myers/builder.rs:182:11 [INFO] [stdout] | [INFO] [stdout] 182 | #[cfg(has_u128)] [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: consider using a Cargo feature instead [INFO] [stdout] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stdout] [lints.rust] [INFO] [stdout] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(has_u128)'] } [INFO] [stdout] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(has_u128)");` to the top of the `build.rs` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition name: `has_u128` [INFO] [stdout] --> src/pattern_matching/myers/helpers.rs:75:7 [INFO] [stdout] | [INFO] [stdout] 75 | #[cfg(has_u128)] [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: consider using a Cargo feature instead [INFO] [stdout] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stdout] [lints.rust] [INFO] [stdout] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(has_u128)'] } [INFO] [stdout] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(has_u128)");` to the top of the `build.rs` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `EnumVariantNames`: please use `#[derive(VariantNames)]` instead [INFO] [stdout] --> src/stats/bayesian/bayes_factors.rs:20:9 [INFO] [stdout] | [INFO] [stdout] 20 | EnumVariantNames, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `block_mut`, `left_block_mut`, and `print_state` are never used [INFO] [stdout] --> src/pattern_matching/myers/traceback.rs:74:8 [INFO] [stdout] | [INFO] [stdout] 65 | pub(super) trait TracebackHandler<'a, T, D> [INFO] [stdout] | ---------------- methods in this trait [INFO] [stdout] ... [INFO] [stdout] 74 | fn block_mut(&mut self) -> &mut State; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 80 | fn left_block_mut(&mut self) -> &mut State; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 149 | fn print_state(&self) { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/data_structures/interval_tree/array_backed_interval_tree.rs:175:39 [INFO] [stdout] | [INFO] [stdout] 175 | pub fn find>>(&self, interval: I) -> Vec> { [INFO] [stdout] | ^^^^^ ----------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 175 | pub fn find>>(&self, interval: I) -> Vec> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/bndm.rs:52:26 [INFO] [stdout] | [INFO] [stdout] 52 | pub fn find_all<'a>(&'a self, text: TextSlice<'a>) -> Matches<'_> { [INFO] [stdout] | ^^ ^^ -- the lifetime gets resolved as `'a` [INFO] [stdout] | | | [INFO] [stdout] | | these lifetimes flow to the output [INFO] [stdout] | these lifetimes flow to the output [INFO] [stdout] | [INFO] [stdout] help: one option is to consistently use `'a` [INFO] [stdout] | [INFO] [stdout] 52 - pub fn find_all<'a>(&'a self, text: TextSlice<'a>) -> Matches<'_> { [INFO] [stdout] 52 + pub fn find_all<'a>(&'a self, text: TextSlice<'a>) -> Matches<'a> { [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/bom.rs:97:26 [INFO] [stdout] | [INFO] [stdout] 97 | pub fn find_all<'a>(&'a self, text: TextSlice<'a>) -> Matches<'_> { [INFO] [stdout] | ^^ ^^ -- the lifetime gets resolved as `'a` [INFO] [stdout] | | | [INFO] [stdout] | | these lifetimes flow to the output [INFO] [stdout] | these lifetimes flow to the output [INFO] [stdout] | [INFO] [stdout] help: one option is to consistently use `'a` [INFO] [stdout] | [INFO] [stdout] 97 - pub fn find_all<'a>(&'a self, text: TextSlice<'a>) -> Matches<'_> { [INFO] [stdout] 97 + pub fn find_all<'a>(&'a self, text: TextSlice<'a>) -> Matches<'a> { [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/horspool.rs:67:26 [INFO] [stdout] | [INFO] [stdout] 67 | pub fn find_all<'b>(&'b self, text: TextSlice<'b>) -> Matches<'_> { [INFO] [stdout] | ^^ ^^ -- the lifetime gets resolved as `'b` [INFO] [stdout] | | | [INFO] [stdout] | | these lifetimes flow to the output [INFO] [stdout] | these lifetimes flow to the output [INFO] [stdout] | [INFO] [stdout] help: one option is to consistently use `'b` [INFO] [stdout] | [INFO] [stdout] 67 - pub fn find_all<'b>(&'b self, text: TextSlice<'b>) -> Matches<'_> { [INFO] [stdout] 67 + pub fn find_all<'b>(&'b self, text: TextSlice<'b>) -> Matches<'b> { [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/kmp.rs:62:27 [INFO] [stdout] | [INFO] [stdout] 62 | pub fn find_all(&self, text: T) -> Matches [INFO] [stdout] | ^^^^^ ----------------------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 62 | pub fn find_all(&self, text: T) -> Matches<'_, C, T::IntoIter> [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/myers/myers_impl.rs:167:9 [INFO] [stdout] | [INFO] [stdout] 167 | &self, [INFO] [stdout] | ^^^^^ this lifetime flows to the output [INFO] [stdout] ... [INFO] [stdout] 170 | ) -> Matches [INFO] [stdout] | -------------------------- the lifetime gets resolved as `'_` [INFO] [stdout] | [INFO] [stdout] ::: src/pattern_matching/myers/long.rs:488:1 [INFO] [stdout] | [INFO] [stdout] 488 | / impl_myers!( [INFO] [stdout] 489 | | usize, [INFO] [stdout] 490 | | Myers, [INFO] [stdout] 491 | | crate::pattern_matching::myers::long::States, [INFO] [stdout] 492 | | crate::pattern_matching::myers::long::LongStatesHandler<'a> [INFO] [stdout] 493 | | ); [INFO] [stdout] | |_- in this macro invocation [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `impl_myers` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 170 | ) -> Matches<'_, T, C, I::IntoIter> [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/myers/myers_impl.rs:167:9 [INFO] [stdout] | [INFO] [stdout] 167 | &self, [INFO] [stdout] | ^^^^^ this lifetime flows to the output [INFO] [stdout] ... [INFO] [stdout] 170 | ) -> Matches [INFO] [stdout] | -------------------------- the lifetime gets resolved as `'_` [INFO] [stdout] | [INFO] [stdout] ::: src/pattern_matching/myers/simple.rs:283:1 [INFO] [stdout] | [INFO] [stdout] 283 | / impl_myers!( [INFO] [stdout] 284 | | T::DistType, [INFO] [stdout] 285 | | Myers, [INFO] [stdout] 286 | | crate::pattern_matching::myers::State, [INFO] [stdout] 287 | | crate::pattern_matching::myers::simple::ShortStatesHandler<'a> [INFO] [stdout] 288 | | ); [INFO] [stdout] | |_- in this macro invocation [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `impl_myers` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 170 | ) -> Matches<'_, T, C, I::IntoIter> [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/ukkonen.rs:66:10 [INFO] [stdout] | [INFO] [stdout] 66 | &'a mut self, [INFO] [stdout] | ^^ these lifetimes flow to the output [INFO] [stdout] 67 | pattern: TextSlice<'a>, [INFO] [stdout] | ^^ these lifetimes flow to the output [INFO] [stdout] ... [INFO] [stdout] 70 | ) -> Matches<'_, F, C, T::IntoIter> [INFO] [stdout] | -- the lifetime gets resolved as `'a` [INFO] [stdout] | [INFO] [stdout] help: one option is to consistently use `'a` [INFO] [stdout] | [INFO] [stdout] 70 - ) -> Matches<'_, F, C, T::IntoIter> [INFO] [stdout] 70 + ) -> Matches<'a, F, C, T::IntoIter> [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 14s [INFO] running `Command { std: "docker" "inspect" "d73ed2836577b62c897b9c8be8a87058fb9689739334cab438d7892c35ecbab6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d73ed2836577b62c897b9c8be8a87058fb9689739334cab438d7892c35ecbab6", kill_on_drop: false }` [INFO] [stdout] d73ed2836577b62c897b9c8be8a87058fb9689739334cab438d7892c35ecbab6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] bf21242d1bc4469d1d2fc69c232d48abcbda0827c6c36f0561f0b5d33bd21241 [INFO] running `Command { std: "docker" "start" "-a" "bf21242d1bc4469d1d2fc69c232d48abcbda0827c6c36f0561f0b5d33bd21241", kill_on_drop: false }` [INFO] [stderr] Compiling getrandom v0.3.3 [INFO] [stderr] Compiling rustix v1.0.7 [INFO] [stderr] Compiling bitflags v2.9.0 [INFO] [stderr] Compiling linux-raw-sys v0.9.4 [INFO] [stderr] Compiling once_cell v1.21.3 [INFO] [stderr] Compiling wait-timeout v0.2.1 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling fnv v1.0.7 [INFO] [stderr] Compiling rand_xorshift v0.3.0 [INFO] [stderr] Compiling unarray v0.1.4 [INFO] [stdout] warning: unexpected `cfg` condition name: `tests` [INFO] [stdout] --> src/data_structures/smallints.rs:198:7 [INFO] [stdout] | [INFO] [stdout] 198 | #[cfg(tests)] [INFO] [stdout] | ^^^^^ help: there is a config with a similar name: `test` [INFO] [stdout] | [INFO] [stdout] = help: consider using a Cargo feature instead [INFO] [stdout] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stdout] [lints.rust] [INFO] [stdout] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(tests)'] } [INFO] [stdout] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(tests)");` to the top of the `build.rs` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition name: `has_u128` [INFO] [stdout] --> src/pattern_matching/myers/builder.rs:134:11 [INFO] [stdout] | [INFO] [stdout] 134 | #[cfg(has_u128)] [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: expected names are: `docsrs`, `feature`, and `test` and 31 more [INFO] [stdout] = help: consider using a Cargo feature instead [INFO] [stdout] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stdout] [lints.rust] [INFO] [stdout] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(has_u128)'] } [INFO] [stdout] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(has_u128)");` to the top of the `build.rs` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition name: `has_u128` [INFO] [stdout] --> src/pattern_matching/myers/builder.rs:182:11 [INFO] [stdout] | [INFO] [stdout] 182 | #[cfg(has_u128)] [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: consider using a Cargo feature instead [INFO] [stdout] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stdout] [lints.rust] [INFO] [stdout] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(has_u128)'] } [INFO] [stdout] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(has_u128)");` to the top of the `build.rs` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition name: `has_u128` [INFO] [stdout] --> src/pattern_matching/myers/helpers.rs:75:7 [INFO] [stdout] | [INFO] [stdout] 75 | #[cfg(has_u128)] [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: consider using a Cargo feature instead [INFO] [stdout] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stdout] [lints.rust] [INFO] [stdout] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(has_u128)'] } [INFO] [stdout] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(has_u128)");` to the top of the `build.rs` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `EnumVariantNames`: please use `#[derive(VariantNames)]` instead [INFO] [stdout] --> src/stats/bayesian/bayes_factors.rs:20:9 [INFO] [stdout] | [INFO] [stdout] 20 | EnumVariantNames, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `block_mut`, `left_block_mut`, and `print_state` are never used [INFO] [stdout] --> src/pattern_matching/myers/traceback.rs:74:8 [INFO] [stdout] | [INFO] [stdout] 65 | pub(super) trait TracebackHandler<'a, T, D> [INFO] [stdout] | ---------------- methods in this trait [INFO] [stdout] ... [INFO] [stdout] 74 | fn block_mut(&mut self) -> &mut State; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 80 | fn left_block_mut(&mut self) -> &mut State; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 149 | fn print_state(&self) { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/data_structures/interval_tree/array_backed_interval_tree.rs:175:39 [INFO] [stdout] | [INFO] [stdout] 175 | pub fn find>>(&self, interval: I) -> Vec> { [INFO] [stdout] | ^^^^^ ----------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 175 | pub fn find>>(&self, interval: I) -> Vec> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/bndm.rs:52:26 [INFO] [stdout] | [INFO] [stdout] 52 | pub fn find_all<'a>(&'a self, text: TextSlice<'a>) -> Matches<'_> { [INFO] [stdout] | ^^ ^^ -- the lifetime gets resolved as `'a` [INFO] [stdout] | | | [INFO] [stdout] | | these lifetimes flow to the output [INFO] [stdout] | these lifetimes flow to the output [INFO] [stdout] | [INFO] [stdout] help: one option is to consistently use `'a` [INFO] [stdout] | [INFO] [stdout] 52 - pub fn find_all<'a>(&'a self, text: TextSlice<'a>) -> Matches<'_> { [INFO] [stdout] 52 + pub fn find_all<'a>(&'a self, text: TextSlice<'a>) -> Matches<'a> { [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/bom.rs:97:26 [INFO] [stdout] | [INFO] [stdout] 97 | pub fn find_all<'a>(&'a self, text: TextSlice<'a>) -> Matches<'_> { [INFO] [stdout] | ^^ ^^ -- the lifetime gets resolved as `'a` [INFO] [stdout] | | | [INFO] [stdout] | | these lifetimes flow to the output [INFO] [stdout] | these lifetimes flow to the output [INFO] [stdout] | [INFO] [stdout] help: one option is to consistently use `'a` [INFO] [stdout] | [INFO] [stdout] 97 - pub fn find_all<'a>(&'a self, text: TextSlice<'a>) -> Matches<'_> { [INFO] [stdout] 97 + pub fn find_all<'a>(&'a self, text: TextSlice<'a>) -> Matches<'a> { [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/horspool.rs:67:26 [INFO] [stdout] | [INFO] [stdout] 67 | pub fn find_all<'b>(&'b self, text: TextSlice<'b>) -> Matches<'_> { [INFO] [stdout] | ^^ ^^ -- the lifetime gets resolved as `'b` [INFO] [stdout] | | | [INFO] [stdout] | | these lifetimes flow to the output [INFO] [stdout] | these lifetimes flow to the output [INFO] [stdout] | [INFO] [stdout] help: one option is to consistently use `'b` [INFO] [stdout] | [INFO] [stdout] 67 - pub fn find_all<'b>(&'b self, text: TextSlice<'b>) -> Matches<'_> { [INFO] [stdout] 67 + pub fn find_all<'b>(&'b self, text: TextSlice<'b>) -> Matches<'b> { [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/kmp.rs:62:27 [INFO] [stdout] | [INFO] [stdout] 62 | pub fn find_all(&self, text: T) -> Matches [INFO] [stdout] | ^^^^^ ----------------------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 62 | pub fn find_all(&self, text: T) -> Matches<'_, C, T::IntoIter> [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/myers/myers_impl.rs:167:9 [INFO] [stdout] | [INFO] [stdout] 167 | &self, [INFO] [stdout] | ^^^^^ this lifetime flows to the output [INFO] [stdout] ... [INFO] [stdout] 170 | ) -> Matches [INFO] [stdout] | -------------------------- the lifetime gets resolved as `'_` [INFO] [stdout] | [INFO] [stdout] ::: src/pattern_matching/myers/long.rs:488:1 [INFO] [stdout] | [INFO] [stdout] 488 | / impl_myers!( [INFO] [stdout] 489 | | usize, [INFO] [stdout] 490 | | Myers, [INFO] [stdout] 491 | | crate::pattern_matching::myers::long::States, [INFO] [stdout] 492 | | crate::pattern_matching::myers::long::LongStatesHandler<'a> [INFO] [stdout] 493 | | ); [INFO] [stdout] | |_- in this macro invocation [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `impl_myers` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 170 | ) -> Matches<'_, T, C, I::IntoIter> [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/myers/myers_impl.rs:167:9 [INFO] [stdout] | [INFO] [stdout] 167 | &self, [INFO] [stdout] | ^^^^^ this lifetime flows to the output [INFO] [stdout] ... [INFO] [stdout] 170 | ) -> Matches [INFO] [stdout] | -------------------------- the lifetime gets resolved as `'_` [INFO] [stdout] | [INFO] [stdout] ::: src/pattern_matching/myers/simple.rs:283:1 [INFO] [stdout] | [INFO] [stdout] 283 | / impl_myers!( [INFO] [stdout] 284 | | T::DistType, [INFO] [stdout] 285 | | Myers, [INFO] [stdout] 286 | | crate::pattern_matching::myers::State, [INFO] [stdout] 287 | | crate::pattern_matching::myers::simple::ShortStatesHandler<'a> [INFO] [stdout] 288 | | ); [INFO] [stdout] | |_- in this macro invocation [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `impl_myers` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 170 | ) -> Matches<'_, T, C, I::IntoIter> [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/ukkonen.rs:66:10 [INFO] [stdout] | [INFO] [stdout] 66 | &'a mut self, [INFO] [stdout] | ^^ these lifetimes flow to the output [INFO] [stdout] 67 | pattern: TextSlice<'a>, [INFO] [stdout] | ^^ these lifetimes flow to the output [INFO] [stdout] ... [INFO] [stdout] 70 | ) -> Matches<'_, F, C, T::IntoIter> [INFO] [stdout] | -- the lifetime gets resolved as `'a` [INFO] [stdout] | [INFO] [stdout] help: one option is to consistently use `'a` [INFO] [stdout] | [INFO] [stdout] 70 - ) -> Matches<'_, F, C, T::IntoIter> [INFO] [stdout] 70 + ) -> Matches<'a, F, C, T::IntoIter> [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling rand_core v0.9.3 [INFO] [stderr] Compiling rand_chacha v0.9.0 [INFO] [stderr] Compiling rand v0.9.1 [INFO] [stderr] Compiling tempfile v3.20.0 [INFO] [stderr] Compiling rusty-fork v0.3.0 [INFO] [stderr] Compiling proptest v1.6.0 [INFO] [stderr] Compiling bio v2.3.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unexpected `cfg` condition value: `nightly` [INFO] [stdout] --> src/data_structures/qgram_index.rs:411:11 [INFO] [stdout] | [INFO] [stdout] 411 | #[cfg(feature = "nightly")] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `generic-simd`, `pest`, `pest_derive`, `phylogeny`, and `runtime-dispatch-simd` [INFO] [stdout] = help: consider adding `nightly` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition name: `tests` [INFO] [stdout] --> src/data_structures/smallints.rs:198:7 [INFO] [stdout] | [INFO] [stdout] 198 | #[cfg(tests)] [INFO] [stdout] | ^^^^^ help: there is a config with a similar name: `test` [INFO] [stdout] | [INFO] [stdout] = help: consider using a Cargo feature instead [INFO] [stdout] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stdout] [lints.rust] [INFO] [stdout] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(tests)'] } [INFO] [stdout] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(tests)");` to the top of the `build.rs` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition name: `has_u128` [INFO] [stdout] --> src/pattern_matching/myers/builder.rs:134:11 [INFO] [stdout] | [INFO] [stdout] 134 | #[cfg(has_u128)] [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: expected names are: `docsrs`, `feature`, and `test` and 31 more [INFO] [stdout] = help: consider using a Cargo feature instead [INFO] [stdout] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stdout] [lints.rust] [INFO] [stdout] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(has_u128)'] } [INFO] [stdout] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(has_u128)");` to the top of the `build.rs` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition name: `has_u128` [INFO] [stdout] --> src/pattern_matching/myers/builder.rs:182:11 [INFO] [stdout] | [INFO] [stdout] 182 | #[cfg(has_u128)] [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: consider using a Cargo feature instead [INFO] [stdout] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stdout] [lints.rust] [INFO] [stdout] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(has_u128)'] } [INFO] [stdout] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(has_u128)");` to the top of the `build.rs` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition name: `has_u128` [INFO] [stdout] --> src/pattern_matching/myers/helpers.rs:75:7 [INFO] [stdout] | [INFO] [stdout] 75 | #[cfg(has_u128)] [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: consider using a Cargo feature instead [INFO] [stdout] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stdout] [lints.rust] [INFO] [stdout] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(has_u128)'] } [INFO] [stdout] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(has_u128)");` to the top of the `build.rs` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `EnumVariantNames`: please use `#[derive(VariantNames)]` instead [INFO] [stdout] --> src/stats/bayesian/bayes_factors.rs:20:9 [INFO] [stdout] | [INFO] [stdout] 20 | EnumVariantNames, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `ndarray::impl_methods::>::into_shape`: Use `.into_shape_with_order()` or `.to_shape()` [INFO] [stdout] --> src/pattern_matching/pssm/protmotif.rs:197:10 [INFO] [stdout] | [INFO] [stdout] 197 | .into_shape((4, 20)) [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `block_mut`, `left_block_mut`, and `print_state` are never used [INFO] [stdout] --> src/pattern_matching/myers/traceback.rs:74:8 [INFO] [stdout] | [INFO] [stdout] 65 | pub(super) trait TracebackHandler<'a, T, D> [INFO] [stdout] | ---------------- methods in this trait [INFO] [stdout] ... [INFO] [stdout] 74 | fn block_mut(&mut self) -> &mut State; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 80 | fn left_block_mut(&mut self) -> &mut State; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 149 | fn print_state(&self) { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `test_degenerate_input` is never used [INFO] [stdout] --> src/pattern_matching/pssm/protmotif.rs:243:8 [INFO] [stdout] | [INFO] [stdout] 243 | fn test_degenerate_input() { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/data_structures/interval_tree/array_backed_interval_tree.rs:175:39 [INFO] [stdout] | [INFO] [stdout] 175 | pub fn find>>(&self, interval: I) -> Vec> { [INFO] [stdout] | ^^^^^ ----------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 175 | pub fn find>>(&self, interval: I) -> Vec> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/bndm.rs:52:26 [INFO] [stdout] | [INFO] [stdout] 52 | pub fn find_all<'a>(&'a self, text: TextSlice<'a>) -> Matches<'_> { [INFO] [stdout] | ^^ ^^ -- the lifetime gets resolved as `'a` [INFO] [stdout] | | | [INFO] [stdout] | | these lifetimes flow to the output [INFO] [stdout] | these lifetimes flow to the output [INFO] [stdout] | [INFO] [stdout] help: one option is to consistently use `'a` [INFO] [stdout] | [INFO] [stdout] 52 - pub fn find_all<'a>(&'a self, text: TextSlice<'a>) -> Matches<'_> { [INFO] [stdout] 52 + pub fn find_all<'a>(&'a self, text: TextSlice<'a>) -> Matches<'a> { [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/bom.rs:97:26 [INFO] [stdout] | [INFO] [stdout] 97 | pub fn find_all<'a>(&'a self, text: TextSlice<'a>) -> Matches<'_> { [INFO] [stdout] | ^^ ^^ -- the lifetime gets resolved as `'a` [INFO] [stdout] | | | [INFO] [stdout] | | these lifetimes flow to the output [INFO] [stdout] | these lifetimes flow to the output [INFO] [stdout] | [INFO] [stdout] help: one option is to consistently use `'a` [INFO] [stdout] | [INFO] [stdout] 97 - pub fn find_all<'a>(&'a self, text: TextSlice<'a>) -> Matches<'_> { [INFO] [stdout] 97 + pub fn find_all<'a>(&'a self, text: TextSlice<'a>) -> Matches<'a> { [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/horspool.rs:67:26 [INFO] [stdout] | [INFO] [stdout] 67 | pub fn find_all<'b>(&'b self, text: TextSlice<'b>) -> Matches<'_> { [INFO] [stdout] | ^^ ^^ -- the lifetime gets resolved as `'b` [INFO] [stdout] | | | [INFO] [stdout] | | these lifetimes flow to the output [INFO] [stdout] | these lifetimes flow to the output [INFO] [stdout] | [INFO] [stdout] help: one option is to consistently use `'b` [INFO] [stdout] | [INFO] [stdout] 67 - pub fn find_all<'b>(&'b self, text: TextSlice<'b>) -> Matches<'_> { [INFO] [stdout] 67 + pub fn find_all<'b>(&'b self, text: TextSlice<'b>) -> Matches<'b> { [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/kmp.rs:62:27 [INFO] [stdout] | [INFO] [stdout] 62 | pub fn find_all(&self, text: T) -> Matches [INFO] [stdout] | ^^^^^ ----------------------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 62 | pub fn find_all(&self, text: T) -> Matches<'_, C, T::IntoIter> [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/myers/myers_impl.rs:167:9 [INFO] [stdout] | [INFO] [stdout] 167 | &self, [INFO] [stdout] | ^^^^^ this lifetime flows to the output [INFO] [stdout] ... [INFO] [stdout] 170 | ) -> Matches [INFO] [stdout] | -------------------------- the lifetime gets resolved as `'_` [INFO] [stdout] | [INFO] [stdout] ::: src/pattern_matching/myers/long.rs:488:1 [INFO] [stdout] | [INFO] [stdout] 488 | / impl_myers!( [INFO] [stdout] 489 | | usize, [INFO] [stdout] 490 | | Myers, [INFO] [stdout] 491 | | crate::pattern_matching::myers::long::States, [INFO] [stdout] 492 | | crate::pattern_matching::myers::long::LongStatesHandler<'a> [INFO] [stdout] 493 | | ); [INFO] [stdout] | |_- in this macro invocation [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `impl_myers` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 170 | ) -> Matches<'_, T, C, I::IntoIter> [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/myers/myers_impl.rs:167:9 [INFO] [stdout] | [INFO] [stdout] 167 | &self, [INFO] [stdout] | ^^^^^ this lifetime flows to the output [INFO] [stdout] ... [INFO] [stdout] 170 | ) -> Matches [INFO] [stdout] | -------------------------- the lifetime gets resolved as `'_` [INFO] [stdout] | [INFO] [stdout] ::: src/pattern_matching/myers/simple.rs:283:1 [INFO] [stdout] | [INFO] [stdout] 283 | / impl_myers!( [INFO] [stdout] 284 | | T::DistType, [INFO] [stdout] 285 | | Myers, [INFO] [stdout] 286 | | crate::pattern_matching::myers::State, [INFO] [stdout] 287 | | crate::pattern_matching::myers::simple::ShortStatesHandler<'a> [INFO] [stdout] 288 | | ); [INFO] [stdout] | |_- in this macro invocation [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `impl_myers` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 170 | ) -> Matches<'_, T, C, I::IntoIter> [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/ukkonen.rs:66:10 [INFO] [stdout] | [INFO] [stdout] 66 | &'a mut self, [INFO] [stdout] | ^^ these lifetimes flow to the output [INFO] [stdout] 67 | pattern: TextSlice<'a>, [INFO] [stdout] | ^^ these lifetimes flow to the output [INFO] [stdout] ... [INFO] [stdout] 70 | ) -> Matches<'_, F, C, T::IntoIter> [INFO] [stdout] | -- the lifetime gets resolved as `'a` [INFO] [stdout] | [INFO] [stdout] help: one option is to consistently use `'a` [INFO] [stdout] | [INFO] [stdout] 70 - ) -> Matches<'_, F, C, T::IntoIter> [INFO] [stdout] 70 + ) -> Matches<'a, F, C, T::IntoIter> [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 33.93s [INFO] running `Command { std: "docker" "inspect" "bf21242d1bc4469d1d2fc69c232d48abcbda0827c6c36f0561f0b5d33bd21241", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bf21242d1bc4469d1d2fc69c232d48abcbda0827c6c36f0561f0b5d33bd21241", kill_on_drop: false }` [INFO] [stdout] bf21242d1bc4469d1d2fc69c232d48abcbda0827c6c36f0561f0b5d33bd21241 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] ed38dda014764ade305e97b85084acd00e76a7969a16af65e4dd839b8dcb84bb [INFO] running `Command { std: "docker" "start" "-a" "ed38dda014764ade305e97b85084acd00e76a7969a16af65e4dd839b8dcb84bb", kill_on_drop: false }` [INFO] [stderr] warning: unexpected `cfg` condition name: `tests` [INFO] [stderr] --> src/data_structures/smallints.rs:198:7 [INFO] [stderr] | [INFO] [stderr] 198 | #[cfg(tests)] [INFO] [stderr] | ^^^^^ help: there is a config with a similar name: `test` [INFO] [stderr] | [INFO] [stderr] = help: consider using a Cargo feature instead [INFO] [stderr] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stderr] [lints.rust] [INFO] [stderr] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(tests)'] } [INFO] [stderr] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(tests)");` to the top of the `build.rs` [INFO] [stderr] = note: see for more information about checking conditional configuration [INFO] [stderr] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unexpected `cfg` condition name: `has_u128` [INFO] [stderr] --> src/pattern_matching/myers/builder.rs:134:11 [INFO] [stderr] | [INFO] [stderr] 134 | #[cfg(has_u128)] [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = help: expected names are: `docsrs`, `feature`, and `test` and 31 more [INFO] [stderr] = help: consider using a Cargo feature instead [INFO] [stderr] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stderr] [lints.rust] [INFO] [stderr] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(has_u128)'] } [INFO] [stderr] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(has_u128)");` to the top of the `build.rs` [INFO] [stderr] = note: see for more information about checking conditional configuration [INFO] [stderr] [INFO] [stderr] warning: unexpected `cfg` condition name: `has_u128` [INFO] [stderr] --> src/pattern_matching/myers/builder.rs:182:11 [INFO] [stderr] | [INFO] [stderr] 182 | #[cfg(has_u128)] [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = help: consider using a Cargo feature instead [INFO] [stderr] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stderr] [lints.rust] [INFO] [stderr] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(has_u128)'] } [INFO] [stderr] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(has_u128)");` to the top of the `build.rs` [INFO] [stderr] = note: see for more information about checking conditional configuration [INFO] [stderr] [INFO] [stderr] warning: unexpected `cfg` condition name: `has_u128` [INFO] [stderr] --> src/pattern_matching/myers/helpers.rs:75:7 [INFO] [stderr] | [INFO] [stderr] 75 | #[cfg(has_u128)] [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = help: consider using a Cargo feature instead [INFO] [stderr] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stderr] [lints.rust] [INFO] [stderr] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(has_u128)'] } [INFO] [stderr] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(has_u128)");` to the top of the `build.rs` [INFO] [stderr] = note: see for more information about checking conditional configuration [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `EnumVariantNames`: please use `#[derive(VariantNames)]` instead [INFO] [stderr] --> src/stats/bayesian/bayes_factors.rs:20:9 [INFO] [stderr] | [INFO] [stderr] 20 | EnumVariantNames, [INFO] [stderr] | ^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: methods `block_mut`, `left_block_mut`, and `print_state` are never used [INFO] [stderr] --> src/pattern_matching/myers/traceback.rs:74:8 [INFO] [stderr] | [INFO] [stderr] 65 | pub(super) trait TracebackHandler<'a, T, D> [INFO] [stderr] | ---------------- methods in this trait [INFO] [stderr] ... [INFO] [stderr] 74 | fn block_mut(&mut self) -> &mut State; [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] ... [INFO] [stderr] 80 | fn left_block_mut(&mut self) -> &mut State; [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] ... [INFO] [stderr] 149 | fn print_state(&self) { [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stderr] --> src/data_structures/interval_tree/array_backed_interval_tree.rs:175:39 [INFO] [stderr] | [INFO] [stderr] 175 | pub fn find>>(&self, interval: I) -> Vec> { [INFO] [stderr] | ^^^^^ ----------- the lifetime gets resolved as `'_` [INFO] [stderr] | | [INFO] [stderr] | this lifetime flows to the output [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stderr] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stderr] | [INFO] [stderr] 175 | pub fn find>>(&self, interval: I) -> Vec> { [INFO] [stderr] | +++ [INFO] [stderr] [INFO] [stderr] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stderr] --> src/pattern_matching/bndm.rs:52:26 [INFO] [stderr] | [INFO] [stderr] 52 | pub fn find_all<'a>(&'a self, text: TextSlice<'a>) -> Matches<'_> { [INFO] [stderr] | ^^ ^^ -- the lifetime gets resolved as `'a` [INFO] [stderr] | | | [INFO] [stderr] | | these lifetimes flow to the output [INFO] [stderr] | these lifetimes flow to the output [INFO] [stderr] | [INFO] [stderr] help: one option is to consistently use `'a` [INFO] [stderr] | [INFO] [stderr] 52 - pub fn find_all<'a>(&'a self, text: TextSlice<'a>) -> Matches<'_> { [INFO] [stderr] 52 + pub fn find_all<'a>(&'a self, text: TextSlice<'a>) -> Matches<'a> { [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stderr] --> src/pattern_matching/bom.rs:97:26 [INFO] [stderr] | [INFO] [stderr] 97 | pub fn find_all<'a>(&'a self, text: TextSlice<'a>) -> Matches<'_> { [INFO] [stderr] | ^^ ^^ -- the lifetime gets resolved as `'a` [INFO] [stderr] | | | [INFO] [stderr] | | these lifetimes flow to the output [INFO] [stderr] | these lifetimes flow to the output [INFO] [stderr] | [INFO] [stderr] help: one option is to consistently use `'a` [INFO] [stderr] | [INFO] [stderr] 97 - pub fn find_all<'a>(&'a self, text: TextSlice<'a>) -> Matches<'_> { [INFO] [stderr] 97 + pub fn find_all<'a>(&'a self, text: TextSlice<'a>) -> Matches<'a> { [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stderr] --> src/pattern_matching/horspool.rs:67:26 [INFO] [stderr] | [INFO] [stderr] 67 | pub fn find_all<'b>(&'b self, text: TextSlice<'b>) -> Matches<'_> { [INFO] [stderr] | ^^ ^^ -- the lifetime gets resolved as `'b` [INFO] [stderr] | | | [INFO] [stderr] | | these lifetimes flow to the output [INFO] [stderr] | these lifetimes flow to the output [INFO] [stderr] | [INFO] [stderr] help: one option is to consistently use `'b` [INFO] [stderr] | [INFO] [stderr] 67 - pub fn find_all<'b>(&'b self, text: TextSlice<'b>) -> Matches<'_> { [INFO] [stderr] 67 + pub fn find_all<'b>(&'b self, text: TextSlice<'b>) -> Matches<'b> { [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stderr] --> src/pattern_matching/kmp.rs:62:27 [INFO] [stderr] | [INFO] [stderr] 62 | pub fn find_all(&self, text: T) -> Matches [INFO] [stderr] | ^^^^^ ----------------------- the lifetime gets resolved as `'_` [INFO] [stderr] | | [INFO] [stderr] | this lifetime flows to the output [INFO] [stderr] | [INFO] [stderr] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stderr] | [INFO] [stderr] 62 | pub fn find_all(&self, text: T) -> Matches<'_, C, T::IntoIter> [INFO] [stderr] | +++ [INFO] [stderr] [INFO] [stderr] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stderr] --> src/pattern_matching/myers/myers_impl.rs:167:9 [INFO] [stderr] | [INFO] [stderr] 167 | &self, [INFO] [stderr] | ^^^^^ this lifetime flows to the output [INFO] [stderr] ... [INFO] [stderr] 170 | ) -> Matches [INFO] [stderr] | -------------------------- the lifetime gets resolved as `'_` [INFO] [stderr] | [INFO] [stderr] ::: src/pattern_matching/myers/long.rs:488:1 [INFO] [stderr] | [INFO] [stderr] 488 | / impl_myers!( [INFO] [stderr] 489 | | usize, [INFO] [stderr] 490 | | Myers, [INFO] [stderr] 491 | | crate::pattern_matching::myers::long::States, [INFO] [stderr] 492 | | crate::pattern_matching::myers::long::LongStatesHandler<'a> [INFO] [stderr] 493 | | ); [INFO] [stderr] | |_- in this macro invocation [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in the macro `impl_myers` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stderr] | [INFO] [stderr] 170 | ) -> Matches<'_, T, C, I::IntoIter> [INFO] [stderr] | +++ [INFO] [stderr] [INFO] [stderr] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stderr] --> src/pattern_matching/myers/myers_impl.rs:167:9 [INFO] [stderr] | [INFO] [stderr] 167 | &self, [INFO] [stderr] | ^^^^^ this lifetime flows to the output [INFO] [stderr] ... [INFO] [stderr] 170 | ) -> Matches [INFO] [stderr] | -------------------------- the lifetime gets resolved as `'_` [INFO] [stderr] | [INFO] [stderr] ::: src/pattern_matching/myers/simple.rs:283:1 [INFO] [stderr] | [INFO] [stderr] 283 | / impl_myers!( [INFO] [stderr] 284 | | T::DistType, [INFO] [stderr] 285 | | Myers, [INFO] [stderr] 286 | | crate::pattern_matching::myers::State, [INFO] [stderr] 287 | | crate::pattern_matching::myers::simple::ShortStatesHandler<'a> [INFO] [stderr] 288 | | ); [INFO] [stderr] | |_- in this macro invocation [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in the macro `impl_myers` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stderr] | [INFO] [stderr] 170 | ) -> Matches<'_, T, C, I::IntoIter> [INFO] [stderr] | +++ [INFO] [stderr] [INFO] [stderr] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stderr] --> src/pattern_matching/ukkonen.rs:66:10 [INFO] [stderr] | [INFO] [stderr] 66 | &'a mut self, [INFO] [stderr] | ^^ these lifetimes flow to the output [INFO] [stderr] 67 | pattern: TextSlice<'a>, [INFO] [stderr] | ^^ these lifetimes flow to the output [INFO] [stderr] ... [INFO] [stderr] 70 | ) -> Matches<'_, F, C, T::IntoIter> [INFO] [stderr] | -- the lifetime gets resolved as `'a` [INFO] [stderr] | [INFO] [stderr] help: one option is to consistently use `'a` [INFO] [stderr] | [INFO] [stderr] 70 - ) -> Matches<'_, F, C, T::IntoIter> [INFO] [stderr] 70 + ) -> Matches<'a, F, C, T::IntoIter> [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: unexpected `cfg` condition value: `nightly` [INFO] [stderr] --> src/data_structures/qgram_index.rs:411:11 [INFO] [stderr] | [INFO] [stderr] 411 | #[cfg(feature = "nightly")] [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: expected values for `feature` are: `generic-simd`, `pest`, `pest_derive`, `phylogeny`, and `runtime-dispatch-simd` [INFO] [stderr] = help: consider adding `nightly` as a feature in `Cargo.toml` [INFO] [stderr] = note: see for more information about checking conditional configuration [INFO] [stderr] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unexpected `cfg` condition name: `tests` [INFO] [stderr] --> src/data_structures/smallints.rs:198:7 [INFO] [stderr] | [INFO] [stderr] 198 | #[cfg(tests)] [INFO] [stderr] | ^^^^^ help: there is a config with a similar name: `test` [INFO] [stderr] | [INFO] [stderr] = help: consider using a Cargo feature instead [INFO] [stderr] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stderr] [lints.rust] [INFO] [stderr] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(tests)'] } [INFO] [stderr] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(tests)");` to the top of the `build.rs` [INFO] [stderr] = note: see for more information about checking conditional configuration [INFO] [stderr] [INFO] [stderr] warning: use of deprecated method `ndarray::impl_methods::>::into_shape`: Use `.into_shape_with_order()` or `.to_shape()` [INFO] [stderr] --> src/pattern_matching/pssm/protmotif.rs:197:10 [INFO] [stderr] | [INFO] [stderr] 197 | .into_shape((4, 20)) [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function `test_degenerate_input` is never used [INFO] [stderr] --> src/pattern_matching/pssm/protmotif.rs:243:8 [INFO] [stderr] | [INFO] [stderr] 243 | fn test_degenerate_input() { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: `bio` (lib) generated 14 warnings (run `cargo fix --lib -p bio` to apply 8 suggestions) [INFO] [stderr] warning: `bio` (lib test) generated 17 warnings (13 duplicates) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.29s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/bio-4cd27f6f37caae0d) [INFO] [stdout] [INFO] [stdout] running 442 tests [INFO] [stdout] test alignment::distance::tests::test_hamming_dist_good ... ok [INFO] [stdout] test alignment::distance::tests::test_simd_levenshtein_dist ... ok [INFO] [stdout] test alignment::distance::tests::test_simd_hamming_dist_good ... ok [INFO] [stdout] test alignment::distance::tests::test_levenshtein_dist ... ok [INFO] [stdout] test alignment::distance::tests::test_simd_bounded_levenshtein_dist ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_band_add_entry ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_band_add_kmer ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_blosum62 ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_aligner_new ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_deletions_ouside_band ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_global ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_global_affine_ins ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_global_affine_ins2 ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_band_starts_inside ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_deletion ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_global_right_del ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_insert_only_semiglobal ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_band_ends_inside ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_insertion_after_clip ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_insertion_ouside_band ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_insert_in_between_semiglobal ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_issue11 ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_issue12_1 ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_issue12_2 ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_issue12_3 ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_left_aligned_del ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_local ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_left_aligned_ins ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_local_affine_ins2 ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_only_clips ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_local_empty ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_longer_string_all_operations ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_insertion ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_band_is_fully_inside ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_overhangs3 ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_overhangs1 ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_semiglobal ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_overhangs2 ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_semiglobal_gap_open_lt_mismatch ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_semiglobal_simple ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_overhangs4 ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_traceback_outside_band ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_xclip_prefix_custom ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_xclip_suffix_custom ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_yclip_prefix_only ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_yclip_suffix_custom ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_yclip_prefix_custom ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_zero_score_clips ... ok [INFO] [stdout] test alignment::pairwise::tests::test_aligner_new ... ok [INFO] [stdout] test alignment::pairwise::tests::test_blosum62 ... ok [INFO] [stdout] test alignment::pairwise::tests::test_blosum62_local ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_overhangs5 ... ok [INFO] [stdout] test alignment::pairwise::tests::test_global ... ok [INFO] [stdout] test alignment::pairwise::tests::test_global_affine_ins ... ok [INFO] [stdout] test alignment::pairwise::tests::test_global_affine_ins2 ... ok [INFO] [stdout] test alignment::pairwise::tests::test_insert_in_between_semiglobal ... ok [INFO] [stdout] test alignment::pairwise::tests::test_global_right_del ... ok [INFO] [stdout] test alignment::pairwise::tests::test_issue11 ... ok [INFO] [stdout] test alignment::pairwise::tests::test_insert_only_semiglobal ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_yclip_suffix_only ... ok [INFO] [stdout] test alignment::pairwise::tests::test_issue12_2 ... ok [INFO] [stdout] test alignment::pairwise::tests::test_issue12_3 ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_substitutions ... ok [INFO] [stdout] test alignment::pairwise::tests::test_left_aligned_del ... ok [INFO] [stdout] test alignment::pairwise::tests::test_left_aligned_ins ... ok [INFO] [stdout] test alignment::pairwise::tests::test_local ... ok [INFO] [stdout] test alignment::pairwise::tests::test_longer_string_all_operations ... ok [INFO] [stdout] test alignment::pairwise::tests::test_local_affine_ins2 ... ok [INFO] [stdout] test alignment::pairwise::tests::test_scoring_from_scores ... ok [INFO] [stdout] test alignment::pairwise::tests::test_issue12_1 ... ok [INFO] [stdout] test alignment::pairwise::tests::test_only_clips ... ok [INFO] [stdout] test alignment::pairwise::tests::test_xclip_prefix_custom ... ok [INFO] [stdout] test alignment::pairwise::tests::test_semiglobal_gap_open_lt_mismatch ... ok [INFO] [stdout] test alignment::pairwise::tests::test_semiglobal ... ok [INFO] [stdout] test alignment::pairwise::tests::test_xclip_prefix_suffix ... ok [INFO] [stdout] test alignment::pairwise::tests::test_yclip_prefix_suffix ... ok [INFO] [stdout] test alignment::pairwise::tests::test_yclip_prefix_custom ... ok [INFO] [stdout] test alignment::pairwise::tests::test_xclip_suffix_custom ... ok [INFO] [stdout] test alignment::pairwise::tests::test_zero_score_clips ... ok [INFO] [stdout] test alignment::pairwise::tests::test_yclip_suffix_custom ... ok [INFO] [stdout] test alignment::pairwise::tests::traceback_cell ... ok [INFO] [stdout] test alignment::poa::tests::test_alignment ... ok [INFO] [stdout] test alignment::poa::tests::test_consensus ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_same ... ok [INFO] [stdout] test alignment::poa::tests::test_branched_alignment ... ok [INFO] [stdout] test alignment::pairwise::tests::test_semiglobal_simple ... ok [INFO] [stdout] test alignment::poa::tests::test_alt_branched_alignment ... ok [INFO] [stdout] test alignment::poa::tests::test_edge_cases ... ok [INFO] [stdout] test alignment::poa::tests::test_xclip_prefix_custom ... ok [INFO] [stdout] test alignment::poa::tests::test_xclip_suffix_custom ... ok [INFO] [stdout] test alignment::poa::tests::test_init_graph ... ok [INFO] [stdout] test alignment::poa::tests::test_yclip_suffix_custom ... ok [INFO] [stdout] test alignment::poa::tests::test_insertion_on_branch ... ok [INFO] [stdout] test alignment::poa::tests::test_yclip_prefix_custom ... ok [INFO] [stdout] test alignment::sparse::sparse_alignment::test_expanded_matches ... ok [INFO] [stdout] test alignment::sparse::sparse_alignment::test_find_kmer_matches ... ok [INFO] [stdout] test alignment::poa::tests::test_poa_method_chaining ... ok [INFO] [stdout] test alignment::sparse::sparse_alignment::test_lcskpp0 ... ok [INFO] [stdout] test alignment::sparse::sparse_alignment::test_lcskpp1 ... ok [INFO] [stdout] test alignment::sparse::sparse_alignment::test_lcskpp2 ... ok [INFO] [stdout] test alignment::sparse::sparse_alignment::test_sdp ... ok [INFO] [stdout] test alignment::sparse::sparse_alignment::test_lcskpp_same ... ok [INFO] [stdout] test alignment::sparse::sparse_alignment::test_sdpkpp_same ... ok [INFO] [stdout] test alignment::sparse::sparse_alignment::test_sdp1 ... ok [INFO] [stdout] test alphabets::dna::tests::is_no_word ... ok [INFO] [stdout] test alphabets::dna::tests::is_word ... ok [INFO] [stdout] test alignment::sparse::sparse_alignment::test_lcskpp_tandem_repeat ... ok [INFO] [stdout] test alignment::distance::tests::test_hamming_dist_bad - should panic ... ok [INFO] [stdout] test alphabets::dna::tests::number_is_no_word ... ok [INFO] [stdout] test alphabets::protein::tests::is_no_word ... ok [INFO] [stdout] test alphabets::dna::tests::symbol_is_no_word ... ok [INFO] [stdout] test alignment::sparse::sparse_alignment::test_sdpkpp_tandem_repeat ... ok [INFO] [stdout] test alignment::distance::tests::test_simd_hamming_dist_bad - should panic ... ok [INFO] [stdout] test alignment::sparse::sparse_alignment::test_sdp2 ... ok [INFO] [stdout] test alphabets::protein::tests::is_word ... ok [INFO] [stdout] test alphabets::rna::tests::is_no_word ... ok [INFO] [stdout] test alphabets::protein::tests::number_is_no_word ... ok [INFO] [stdout] test alphabets::rna::tests::number_is_no_word ... ok [INFO] [stdout] test alphabets::rna::tests::is_word ... ok [INFO] [stdout] test alphabets::tests::test_alphabet_eq ... ok [INFO] [stdout] test alphabets::tests::test_exactsize_iterator ... ok [INFO] [stdout] test alphabets::tests::test_qgram_shiftleft_overflow ... ok [INFO] [stdout] test alphabets::protein::tests::iupac_contains_iupac_chars ... ok [INFO] [stdout] test alphabets::protein::tests::symbol_is_no_word ... ok [INFO] [stdout] test alphabets::rna::tests::symbol_is_no_word ... ok [INFO] [stdout] test alphabets::tests::test_rev_qgrams ... ok [INFO] [stdout] test alphabets::tests::test_qgrams ... ok [INFO] [stdout] test alphabets::rna::tests::test_reverse_complement ... ok [INFO] [stdout] test data_structures::annot_map::tests::lookup ... ok [INFO] [stdout] test data_structures::annot_map::tests::overlaps ... ok [INFO] [stdout] test data_structures::bit_tree::test_bit_tree::test_bit_tree ... ok [INFO] [stdout] test data_structures::bitenc::tests::test_bitenc ... ok [INFO] [stdout] test data_structures::bwt::tests::test_bwtfind ... ok [INFO] [stdout] test data_structures::bitenc::tests::test_issue29 ... ok [INFO] [stdout] test data_structures::bitenc::tests::test_push_values_edge_cases ... ok [INFO] [stdout] test data_structures::bwt::tests::test_invert_bwt ... ok [INFO] [stdout] test data_structures::bwt::tests::test_occ ... ok [INFO] [stdout] test data_structures::fmindex::tests::test_fmindex ... ok [INFO] [stdout] test data_structures::fmindex::tests::test_all_smems ... ok [INFO] [stdout] test data_structures::fmindex::tests::test_fmindex_backward_search_partial_match ... ok [INFO] [stdout] test data_structures::bwt::tests::test_occwm ... ok [INFO] [stdout] test data_structures::fmindex::tests::test_fmindex_backward_search_optimization ... ok [INFO] [stdout] test data_structures::fmindex::tests::test_init_interval ... ok [INFO] [stdout] test data_structures::fmindex::tests::test_fmindex_not_found ... ok [INFO] [stdout] test data_structures::bitenc::tests::test_push_values ... ok [INFO] [stdout] test data_structures::interval_tree::array_backed_interval_tree::tests::test_disjoint_two_element_search ... ok [INFO] [stdout] test data_structures::interval_tree::array_backed_interval_tree::tests::test_example ... ok [INFO] [stdout] test data_structures::interval_tree::avl_interval_tree::tests::from_iterator ... ok [INFO] [stdout] test data_structures::interval_tree::avl_interval_tree::tests::iter_mut ... ok [INFO] [stdout] test data_structures::interval_tree::avl_interval_tree::tests::test_insertion_and_intersection ... ok [INFO] [stdout] test data_structures::fmindex::tests::test_smems ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_big ... ok [INFO] [stdout] test data_structures::interval_tree::avl_interval_tree::tests::zero_width_ranges ... ok [INFO] [stdout] test data_structures::qgram_index::tests::test_exact_matches ... ok [INFO] [stdout] test data_structures::qgram_index::tests::test_exact_matches_self ... ok [INFO] [stdout] test data_structures::qgram_index::tests::test_iterator ... ok [INFO] [stdout] test data_structures::qgram_index::tests::test_matches ... ok [INFO] [stdout] test data_structures::qgram_index::tests::test_qgram_matches ... ok [INFO] [stdout] test data_structures::qgram_index::tests::test_qgram_with_max_count ... ok [INFO] [stdout] test data_structures::qgram_index::tests::test_qgram_with_max_count_index_0 ... ok [INFO] [stdout] test data_structures::qgram_index::tests::test_qgram_sizeof_pos ... ok [INFO] [stdout] test data_structures::rank_select::tests::test_rank_k ... ok [INFO] [stdout] test data_structures::rank_select::tests::test_rank_select ... ok [INFO] [stdout] test data_structures::rank_select::tests::test_rank_select2 ... ok [INFO] [stdout] test data_structures::rank_select::tests::test_select ... ok [INFO] [stdout] test data_structures::rank_select::tests::test_select_end ... ok [INFO] [stdout] test data_structures::rank_select::tests::test_select_start ... ok [INFO] [stdout] test data_structures::rank_select::tests::test_single_select ... ok [INFO] [stdout] test data_structures::suffix_array::tests::can_construct_sa_for_usize ... ok [INFO] [stdout] test data_structures::suffix_array::tests::test_buckets ... ok [INFO] [stdout] test data_structures::suffix_array::tests::test_issue10_1 ... ok [INFO] [stdout] test data_structures::suffix_array::tests::test_issue10_2 ... ok [INFO] [stdout] test data_structures::suffix_array::tests::test_lms_pos ... ok [INFO] [stdout] test data_structures::suffix_array::tests::test_pos ... ok [INFO] [stdout] test data_structures::suffix_array::tests::test_handles_sentinels_properly ... ok [INFO] [stdout] test data_structures::suffix_array::tests::test_pos_types ... ok [INFO] [stdout] test data_structures::interval_tree::avl_interval_tree::tests::test_insertion_and_intersection_2 ... ok [INFO] [stdout] test data_structures::wavelet_matrix::tests::test_wm_buildpaper ... ok [INFO] [stdout] test data_structures::wavelet_matrix::tests::test_wm_builddna ... ok [INFO] [stdout] test data_structures::wavelet_matrix::tests::test_wm_rank_1 ... ok [INFO] [stdout] test data_structures::wavelet_matrix::tests::test_wm_rank_2 ... ok [INFO] [stdout] test data_structures::wavelet_matrix::tests::test_wm_rank_all ... ok [INFO] [stdout] test data_structures::fmindex::tests::test_issue39 ... ok [INFO] [stdout] test data_structures::wavelet_matrix::tests::test_wm_rank_firstpos ... ok [INFO] [stdout] test data_structures::wavelet_matrix::tests::test_wm_rank_lastpos ... ok [INFO] [stdout] test data_structures::wavelet_matrix::tests::test_wm_rank_alldna ... ok [INFO] [stdout] test io::bed::tests::test_bed_from_contig ... ok [INFO] [stdout] test io::bed::tests::test_bed_from_pos ... ok [INFO] [stdout] test io::bed::tests::spliced_to_bed ... ok [INFO] [stdout] test io::bed::tests::test_reader ... ok [INFO] [stdout] test io::bed::tests::test_reader_compact ... ok [INFO] [stdout] test io::bed::tests::test_reader_with_comment ... ok [INFO] [stdout] test io::bed::tests::test_writer ... ok [INFO] [stdout] test io::fasta::tests::test_display_record_no_desc_id_without_space_after ... ok [INFO] [stdout] test data_structures::wavelet_matrix::tests::test_wm_rank_overflowpanic - should panic ... ok [INFO] [stdout] test io::fasta::tests::test_display_record_with_desc_id_has_space_between_id_and_desc ... ok [INFO] [stdout] test io::bed::tests::test_reader_from_file_path_doesnt_exist_returns_err ... ok [INFO] [stdout] test io::fasta::tests::test_faread_trait ... ok [INFO] [stdout] test io::fasta::tests::test_index_record_idx_by_rid_invalid_index_returns_error ... ok [INFO] [stdout] test io::fasta::tests::test_index_record_fetch_by_rid_second_index_returns_second_record ... ok [INFO] [stdout] test io::fasta::tests::test_index_sequences ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_by_rid_all ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_crlf ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_all ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_crlf_all ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_bad_reader ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_iter_all ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_iter_by_rid_all ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_iter ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_crlf_by_rid_all ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_iter_crlf ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_iter_read_fails ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_iter_crlf_by_rid_all ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_iter_seek_fails ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_no_fetch_read_fails ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_iter_size_hint ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_no_trailing_lf ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_no_fetch_read_iter_fails ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_read_seek_fails ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_read_read_fails ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_reused_buffer ... ok [INFO] [stdout] test io::fasta::tests::test_reader ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_iter_crlf_all ... ok [INFO] [stdout] test io::fasta::tests::test_reader_from_file_path_doesnt_exist_returns_err ... ok [INFO] [stdout] test io::fasta::tests::test_reader_no_id ... ok [INFO] [stdout] test io::fasta::tests::test_reader_non_ascii_sequence ... ok [INFO] [stdout] test io::fasta::tests::test_reader_read_fails ... ok [INFO] [stdout] test io::fasta::tests::test_record_with_attrs_with_description ... ok [INFO] [stdout] test io::fasta::tests::test_reader_read_fails_iter ... ok [INFO] [stdout] test io::fasta::tests::test_record_with_attrs_without_description ... ok [INFO] [stdout] test io::fasta::tests::test_write_with_linewrap ... ok [INFO] [stdout] test io::fasta::tests::test_reader_wrong_header ... ok [INFO] [stdout] test io::fasta::tests::test_writer ... ok [INFO] [stdout] test io::fasta::tests::test_writer_to_file_dir_exists_returns_ok ... ok [INFO] [stdout] test io::fastq::tests::test_check_record_id_is_empty_raises_err ... ok [INFO] [stdout] test io::fastq::tests::test_check_record_quality_and_seq_diff_len_raises_err ... ok [INFO] [stdout] test io::fasta::tests::test_writer_to_file_dir_doesnt_exist_returns_err ... ok [INFO] [stdout] test io::fastq::tests::test_check_record_seq_is_not_ascii_raises_err ... ok [INFO] [stdout] test io::fastq::tests::test_check_record_quality_is_not_ascii_raises_err ... ok [INFO] [stdout] test io::fasta::tests::test_write_record ... FAILED [INFO] [stdout] test data_structures::interpolation_table::tests::test_interpolation_table ... ok [INFO] [stdout] test io::fastq::tests::test_display_record_with_desc_id_has_space_between_id_and_desc ... ok [INFO] [stdout] test io::fastq::tests::test_check_valid_record ... ok [INFO] [stdout] test io::fastq::tests::test_fqread_trait ... ok [INFO] [stdout] test io::fastq::tests::test_read_header_does_not_start_with_correct_char_raises_err ... ok [INFO] [stdout] test io::fastq::tests::test_read_sequence_and_quality_are_wrapped_is_handled_with_three_sequences ... ok [INFO] [stdout] test io::fastq::tests::test_read_quality_is_empty_raises_err ... ok [INFO] [stdout] test io::fastq::tests::test_read_sequence_and_quality_are_wrapped_is_handled_with_one_sequence ... ok [INFO] [stdout] test io::fastq::tests::test_read_with_missing_plus ... ok [INFO] [stdout] test io::fastq::tests::test_reader ... ok [INFO] [stdout] test io::fastq::tests::test_reader_from_file_path_doesnt_exist_returns_err ... ok [INFO] [stdout] test io::fastq::tests::test_reader_from_file_path_exists_returns_ok ... ok [INFO] [stdout] test io::fastq::tests::test_record_with_attrs ... ok [INFO] [stdout] test io::fastq::tests::test_read_wrapped_record_with_inconsistent_wrapping_errors ... ok [INFO] [stdout] test io::fastq::tests::test_record_iterator_next_read_returns_err_causes_next_to_return_some_err ... ok [INFO] [stdout] test io::fastq::tests::test_sequence_read_for_record_trait_method_base_idx_in_range ... ok [INFO] [stdout] test io::fastq::tests::test_sequence_read_for_record_trait_method_base_idx_out_of_range - should panic ... ok [INFO] [stdout] test io::fastq::tests::test_display_record_no_desc_id_without_space_after ... ok [INFO] [stdout] test io::fastq::tests::test_sequence_read_for_record_trait_method_base_qual_idx_in_range ... ok [INFO] [stdout] test io::fastq::tests::test_sequence_read_for_record_trait_method_len ... ok [INFO] [stdout] test io::fastq::tests::test_writer ... ok [INFO] [stdout] test io::fastq::tests::test_sequence_read_for_record_trait_method_base_qual_idx_out_of_range - should panic ... ok [INFO] [stdout] test io::fastq::tests::test_writer_to_file_dir_exists_returns_ok ... ok [INFO] [stdout] test io::fastq::tests::test_write_record ... FAILED [INFO] [stdout] test io::fastx::tests::test_either_records_from_file ... FAILED [INFO] [stdout] test io::fastx::tests::test_either_record_from_records ... ok [INFO] [stdout] test io::fastx::tests::test_empty_either_records ... ok [INFO] [stdout] test io::fastx::tests::test_empty_either_records_kind ... ok [INFO] [stdout] test io::fastx::tests::test_fasta_either_record ... ok [INFO] [stdout] test io::fastx::tests::test_fasta_either_records_err ... ok [INFO] [stdout] test io::fastx::tests::test_fasta_either_records ... ok [INFO] [stdout] test io::fastq::tests::test_writer_to_file_dir_doesnt_exist_returns_err ... ok [INFO] [stdout] test io::fastq::tests::test_sequence_read_for_record_trait_method_name ... ok [INFO] [stdout] test io::fastx::tests::test_fasta_either_records_kind ... ok [INFO] [stdout] test io::fastx::tests::test_fastq_either_record ... ok [INFO] [stdout] test io::fastx::tests::test_fastq_either_records ... ok [INFO] [stdout] test io::fastx::tests::test_fastq_either_records_err ... ok [INFO] [stdout] test io::fastx::tests::test_get_kind_detailed_read_empty ... ok [INFO] [stdout] test io::fastx::tests::test_get_kind_detailed_read_fasta ... ok [INFO] [stdout] test io::fastx::tests::test_get_kind_detailed_error ... ok [INFO] [stdout] test io::fastx::tests::test_get_kind_detailed_read_invalid ... ok [INFO] [stdout] test io::fastx::tests::test_get_kind_seek_empty ... ok [INFO] [stdout] test io::fastx::tests::test_get_kind_seek_fasta ... ok [INFO] [stdout] test io::fastx::tests::test_get_kind_detailed_read_fastq ... ok [INFO] [stdout] test io::fastx::tests::test_fastq_either_records_kind ... ok [INFO] [stdout] test io::fastx::tests::test_get_kind_file ... FAILED [INFO] [stdout] test io::fastx::tests::test_invalid_either_records ... ok [INFO] [stdout] test io::fastx::tests::test_get_kind_seek_invalid ... ok [INFO] [stdout] test io::fastx::tests::test_records_trait ... ok [INFO] [stdout] test io::fastx::tests::test_kind_display ... ok [INFO] [stdout] test io::gff::tests::test_from_u8_creates_phase_with_value ... ok [INFO] [stdout] test io::fastx::tests::test_get_kind_seek_fastq ... ok [INFO] [stdout] test io::gff::tests::test_reader_from_file_path_doesnt_exist_returns_err ... ok [INFO] [stdout] test io::gff::tests::test_convert_gtf2_to_gff3 ... ok [INFO] [stdout] test io::gff::tests::test_gff_type_from_str ... ok [INFO] [stdout] test io::gff::tests::test_reader_gtf2_2 ... ok [INFO] [stdout] test io::gff::tests::test_reader_gtf2 ... ok [INFO] [stdout] test io::gff::tests::test_reader_gtf2_dup_attr_keys ... ok [INFO] [stdout] test io::gff::tests::test_reader_gff3 ... ok [INFO] [stdout] test io::gff::tests::test_try_into_u8_returns_value_for_phase_with_value ... ok [INFO] [stdout] test io::gff::tests::test_try_into_u8_returns_error_for_phase_with_none ... ok [INFO] [stdout] test pattern_matching::bndm::tests::test_find_all ... ok [INFO] [stdout] test io::gff::tests::test_writer_gtf2 ... ok [INFO] [stdout] test io::gff::tests::test_unknown_gff_type ... ok [INFO] [stdout] test pattern_matching::bndm::tests::test_find_all_at_start ... ok [INFO] [stdout] test pattern_matching::bom::tests::test_delta ... ok [INFO] [stdout] test io::gff::tests::test_writer_gff3 ... ok [INFO] [stdout] test pattern_matching::bom::tests::test_find_all ... ok [INFO] [stdout] test pattern_matching::bom::tests::test_find_all_at_start ... ok [INFO] [stdout] test pattern_matching::horspool::tests::test_find_all_at_start ... ok [INFO] [stdout] test pattern_matching::horspool::tests::test_find_all ... ok [INFO] [stdout] test pattern_matching::horspool::tests::test_shift ... ok [INFO] [stdout] test pattern_matching::kmp::tests::test_delta ... ok [INFO] [stdout] test pattern_matching::kmp::tests::test_find_all ... ok [INFO] [stdout] test pattern_matching::kmp::tests::test_lps ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_distance ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_ambig ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_full_position ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_large_dist ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_find_all_end ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_longest_possible ... ok [INFO] [stdout] test pattern_matching::kmp::tests::test_find_all_at_start ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_alignment ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_myers_long_overflow ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_shorter ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_path_at ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_position_cmp ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_long_shorter ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_traceback_path2 ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_traceback_path ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_alignment ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_ambig ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_full_position ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_find_all_end ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_distance ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_large_dist ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_path_at ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_long_shorter ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_longest_possible ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_shorter ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_position_cmp ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_traceback_path2 ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_traceback_path ... ok [INFO] [stdout] test pattern_matching::pssm::dnamotif::tests::simple_pssm ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_pattern_too_long_builder - should panic ... ok [INFO] [stdout] test pattern_matching::pssm::dnamotif::tests::test_degenerate_consensus_same_bases ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_pattern_too_long - should panic ... ok [INFO] [stdout] test pattern_matching::pssm::dnamotif::tests::test_degenerate_consensus_n ... ok [INFO] [stdout] test pattern_matching::pssm::dnamotif::tests::test_degenerate_consensus_two_bases ... ok [INFO] [stdout] test pattern_matching::pssm::dnamotif::tests::test_inconsist_err ... ok [INFO] [stdout] test pattern_matching::pssm::dnamotif::tests::find_motif ... ok [INFO] [stdout] test pattern_matching::pssm::dnamotif::tests::test_info_content ... ok [INFO] [stdout] test pattern_matching::pssm::dnamotif::tests::test_degenerate_consensus_three_bases ... ok [INFO] [stdout] test pattern_matching::pssm::dnamotif::tests::test_mono_err ... ok [INFO] [stdout] test pattern_matching::pssm::dnamotif::tests::test_degenerate_input ... ok [INFO] [stdout] test pattern_matching::pssm::protmotif::tests::test_inconsist_err ... ok [INFO] [stdout] test pattern_matching::pssm::protmotif::tests::test_degenerate_consensus_same_bases ... ok [INFO] [stdout] test pattern_matching::pssm::protmotif::tests::test_degenerate_consensus_x ... ok [INFO] [stdout] test pattern_matching::pssm::protmotif::tests::test_scoring ... ok [INFO] [stdout] test pattern_matching::shift_and::tests::test_issue_416 ... ok [INFO] [stdout] test pattern_matching::shift_and::tests::test_multiple_finds ... ok [INFO] [stdout] test pattern_matching::ukkonen::tests::test_find_all_end ... ok [INFO] [stdout] test pattern_matching::ukkonen::tests::test_find_start ... ok [INFO] [stdout] test scores::blosum30::tests::test_blosum30 ... ok [INFO] [stdout] test scores::blosum45::tests::test_blosum45 ... ok [INFO] [stdout] test pattern_matching::pssm::protmotif::tests::test_mono_err ... ok [INFO] [stdout] test scores::blosum62::tests::test_blosum62 ... ok [INFO] [stdout] test scores::pam120::tests::test_pam120 ... ok [INFO] [stdout] test pattern_matching::pssm::protmotif::tests::test_info_content ... ok [INFO] [stdout] test scores::pam250::tests::test_pam250 ... ok [INFO] [stdout] test scores::pam40::tests::test_pam40 ... ok [INFO] [stdout] test seq_analysis::gc::tests::test_gc_content ... ok [INFO] [stdout] test pattern_matching::shift_and::tests::test_find_all ... ok [INFO] [stdout] test seq_analysis::orf::tests::test_no_orf ... ok [INFO] [stdout] test seq_analysis::orf::tests::test_one_orf_no_offset ... ok [INFO] [stdout] test scores::pam200::tests::test_pam200 ... ok [INFO] [stdout] test seq_analysis::orf::tests::test_one_orf_with_offset ... ok [INFO] [stdout] test seq_analysis::orf::tests::test_two_orfs_different_offsets ... ok [INFO] [stdout] test stats::bayesian::bayes_factors::tests::test_bayes_factor ... ok [INFO] [stdout] test stats::bayesian::tests::test_expected_fdr ... ok [INFO] [stdout] test stats::combinatorics::tests::test_comb ... ok [INFO] [stdout] test seq_analysis::orf::tests::test_three_nested_and_offset_orfs ... ok [INFO] [stdout] test stats::hmm::tests::test_baum_welch_one_iter_example ... ok [INFO] [stdout] test stats::combinatorics::tests::test_comb_scaled ... ok [INFO] [stdout] test stats::hmm::tests::test_discrete_backward_toy_example ... ok [INFO] [stdout] test stats::hmm::tests::test_discrete_forward_toy_example ... ok [INFO] [stdout] test stats::hmm::tests::test_discrete_viterbi_toy_example ... ok [INFO] [stdout] test stats::hmm::tests::test_discrete_with_end_backward_toy_example ... ok [INFO] [stdout] test stats::hmm::tests::test_baum_welch_train_example ... ok [INFO] [stdout] test stats::hmm::tests::test_gaussian_backward_simple_example ... ok [INFO] [stdout] test stats::hmm::tests::test_gaussian_forward_simple_example ... ok [INFO] [stdout] test stats::hmm::tests::test_gaussian_viterbi_simple_example ... ok [INFO] [stdout] test stats::hmm::tests::test_recriate_discrete_backward_toy_example ... ok [INFO] [stdout] test stats::pairhmm::homopolypairhmm::tests::impossible_global_alignment ... ok [INFO] [stdout] test stats::hmm::tests::test_gaussian_forward_equals_backward_simple_example ... ok [INFO] [stdout] test stats::pairhmm::homopolypairhmm::tests::test_gap_x ... ok [INFO] [stdout] test stats::pairhmm::homopolypairhmm::tests::test_gap_x_2 ... ok [INFO] [stdout] test stats::hmm::tests::test_discrete_forward_equals_backward_toy_example ... ok [INFO] [stdout] test stats::pairhmm::homopolypairhmm::tests::test_gap_y ... ok [INFO] [stdout] test stats::pairhmm::homopolypairhmm::tests::test_hompolymer_run_in_x ... ok [INFO] [stdout] test stats::pairhmm::homopolypairhmm::tests::test_hompolymer_run_in_y ... ok [INFO] [stdout] test stats::pairhmm::homopolypairhmm::tests::test_interleave_gaps_x ... ok [INFO] [stdout] test stats::pairhmm::homopolypairhmm::tests::test_interleave_gaps_y ... ok [INFO] [stdout] test stats::pairhmm::homopolypairhmm::tests::test_mismatch ... ok [INFO] [stdout] test stats::pairhmm::homopolypairhmm::tests::test_multigap_y ... ok [INFO] [stdout] test stats::pairhmm::homopolypairhmm::tests::test_phmm_vs_phhmm ... ok [INFO] [stdout] test stats::pairhmm::pairhmm::tests::impossible_global_alignment ... ok [INFO] [stdout] test stats::pairhmm::homopolypairhmm::tests::test_same ... ok [INFO] [stdout] test stats::pairhmm::pairhmm::tests::test_gap_x ... ok [INFO] [stdout] test stats::pairhmm::pairhmm::tests::test_gap_y ... ok [INFO] [stdout] test stats::pairhmm::pairhmm::tests::test_interleave_gaps_x ... ok [INFO] [stdout] test stats::pairhmm::pairhmm::tests::test_banded ... ok [INFO] [stdout] test stats::pairhmm::pairhmm::tests::test_interleave_gaps_y ... ok [INFO] [stdout] test stats::pairhmm::pairhmm::tests::test_mismatch ... ok [INFO] [stdout] test stats::pairhmm::pairhmm::tests::test_same ... ok [INFO] [stdout] test stats::probs::cdf::test::test_cdf ... ok [INFO] [stdout] test stats::probs::tests::test_cap_numerical_overshoot ... ok [INFO] [stdout] test stats::probs::tests::test_cumsum ... ok [INFO] [stdout] test stats::probs::tests::test_empty_sum ... ok [INFO] [stdout] test stats::probs::tests::test_one_minus ... ok [INFO] [stdout] test stats::probs::tests::test_simpsons_integrate ... ok [INFO] [stdout] test stats::probs::tests::test_sub ... ok [INFO] [stdout] test stats::probs::tests::test_sum ... ok [INFO] [stdout] test stats::probs::tests::test_cap_numerical_overshoot_panic - should panic ... ok [INFO] [stdout] test stats::probs::tests::test_sum_one_zero ... ok [INFO] [stdout] test stats::probs::tests::test_trapezoidal_integrate_grid ... ok [INFO] [stdout] test stats::probs::tests::test_trapezoidal_integrate ... ok [INFO] [stdout] test stats::probs::tests::test_zero ... ok [INFO] [stdout] test utils::fastexp::tests::test_fastexp ... ok [INFO] [stdout] test utils::interval::tests::negative_width_range - should panic ... ok [INFO] [stdout] test utils::tests::test_prescan ... ok [INFO] [stdout] test utils::tests::test_scan ... ok [INFO] [stdout] test utils::text::tests::test_print_sequence ... ok [INFO] [stdout] test utils::text::tests::test_trim_newline_from_string ... ok [INFO] [stdout] test utils::interval::tests::range_interval_conversions ... ok [INFO] [stdout] test data_structures::interval_tree::array_backed_interval_tree::tests::find_arbitrary ... ok [INFO] [stdout] test stats::pairhmm::homopolypairhmm::tests::test_banded ... ok [INFO] [stdout] test seq_analysis::gc::tests::test_gc_content_large ... ok [INFO] [stdout] test alignment::poa::tests::test_global_banded ... ok [INFO] [stdout] test data_structures::suffix_array::tests::test_sorts_lexically ... ok [INFO] [stdout] test data_structures::suffix_array::tests::test_sampled_matches ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- io::fasta::tests::test_write_record stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'io::fasta::tests::test_write_record' panicked at src/io/fasta.rs:1841:43: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 30, kind: ReadOnlyFilesystem, message: "Read-only file system" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x77df6d1a90b2 - std::backtrace_rs::backtrace::libunwind::trace::h559918daaaf51ab7 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x77df6d1a90b2 - std::backtrace_rs::backtrace::trace_unsynchronized::hb04fbcf80d07af8b [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x77df6d1a90b2 - std::sys::backtrace::_print_fmt::h7c0bbbbfac0065d4 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:66:9 [INFO] [stdout] 3: 0x77df6d1a90b2 - ::fmt::hb62c8ed31943daa5 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:39:26 [INFO] [stdout] 4: 0x77df6d1e82b3 - core::fmt::rt::Argument::fmt::he5eaa7dd607ed4c9 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/fmt/rt.rs:173:76 [INFO] [stdout] 5: 0x77df6d1e82b3 - core::fmt::write::h375399f8cb90b45a [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/fmt/mod.rs:1460:25 [INFO] [stdout] 6: 0x77df6d1a5c83 - std::io::default_write_fmt::hdc1b4dd565dd0099 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x77df6d1a5c83 - std::io::Write::write_fmt::h29f6044e9bc43c23 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/io/mod.rs:1954:13 [INFO] [stdout] 8: 0x77df6d1a8f02 - std::sys::backtrace::BacktraceLock::print::ha189c586374f916a [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:42:9 [INFO] [stdout] 9: 0x77df6d1aa73c - std::panicking::default_hook::{{closure}}::ha3a26c98ff210e12 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:300:27 [INFO] [stdout] 10: 0x77df6d1aa592 - std::panicking::default_hook::h8c8a86b4390ab794 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:324:9 [INFO] [stdout] 11: 0x77df6ce0b5b4 - as core::ops::function::Fn>::call::ha39ae63ed1e9a130 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/alloc/src/boxed.rs:1980:9 [INFO] [stdout] 12: 0x77df6ce0b5b4 - test::test_main_with_exit_callback::{{closure}}::h9df7c328ebe18c28 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x77df6d1ab1a3 - as core::ops::function::Fn>::call::h96b7201b552e9069 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/alloc/src/boxed.rs:1980:9 [INFO] [stdout] 14: 0x77df6d1ab1a3 - std::panicking::rust_panic_with_hook::hb3b66c2e80efa371 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:841:13 [INFO] [stdout] 15: 0x77df6d1aae8a - std::panicking::begin_panic_handler::{{closure}}::h9c68d0f839e62070 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:706:13 [INFO] [stdout] 16: 0x77df6d1a95b9 - std::sys::backtrace::__rust_end_short_backtrace::h68d22ddde4a73ad6 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:168:18 [INFO] [stdout] 17: 0x77df6d1aab1d - __rustc[f4ffc7196a45a630]::rust_begin_unwind [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:697:5 [INFO] [stdout] 18: 0x77df6c8b06c0 - core::panicking::panic_fmt::h8cdd4c81eb9069aa [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/panicking.rs:75:14 [INFO] [stdout] 19: 0x77df6c8b0b26 - core::result::unwrap_failed::h8476ffaa6db8205b [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/result.rs:1761:5 [INFO] [stdout] 20: 0x77df6cd07784 - core::result::Result::unwrap::he148933e8c43c095 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/result.rs:1167:23 [INFO] [stdout] 21: 0x77df6cd07784 - bio::io::fasta::tests::test_write_record::h998e732f60c7d29a [INFO] [stdout] at /opt/rustwide/workdir/src/io/fasta.rs:1841:43 [INFO] [stdout] 22: 0x77df6cd076e7 - bio::io::fasta::tests::test_write_record::{{closure}}::h07a05f3515d5e636 [INFO] [stdout] at /opt/rustwide/workdir/src/io/fasta.rs:1839:27 [INFO] [stdout] 23: 0x77df6cb5ebd6 - core::ops::function::FnOnce::call_once::hc4e9ae2779c67fa6 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 24: 0x77df6ce10cab - core::ops::function::FnOnce::call_once::h9633dcf760ae81b2 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x77df6ce10cab - test::__rust_begin_short_backtrace::h12ad5e04c8d7b4a5 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/test/src/lib.rs:648:18 [INFO] [stdout] 26: 0x77df6ce0ff1e - test::run_test_in_process::{{closure}}::he596b4fd3fa4893c [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/test/src/lib.rs:671:74 [INFO] [stdout] 27: 0x77df6ce0ff1e - as core::ops::function::FnOnce<()>>::call_once::hc746bc3fa75190e0 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 28: 0x77df6ce0ff1e - std::panicking::catch_unwind::do_call::hf4843906108d6299 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:589:40 [INFO] [stdout] 29: 0x77df6ce0ff1e - std::panicking::catch_unwind::h849d4e8b03577bb9 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:552:19 [INFO] [stdout] 30: 0x77df6ce0ff1e - std::panic::catch_unwind::ha1f814c1dec025d2 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panic.rs:359:14 [INFO] [stdout] 31: 0x77df6ce0ff1e - test::run_test_in_process::h542aad3fe61255e7 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/test/src/lib.rs:671:27 [INFO] [stdout] 32: 0x77df6ce0ff1e - test::run_test::{{closure}}::h612788d75908cb63 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/test/src/lib.rs:592:43 [INFO] [stdout] 33: 0x77df6cdd4da4 - test::run_test::{{closure}}::hbfeea3bcb7245123 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/test/src/lib.rs:622:41 [INFO] [stdout] 34: 0x77df6cdd4da4 - std::sys::backtrace::__rust_begin_short_backtrace::h72542b83b4f87d5b [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:152:18 [INFO] [stdout] 35: 0x77df6cdd859a - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::hff26a7547ea762c9 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/thread/mod.rs:559:17 [INFO] [stdout] 36: 0x77df6cdd859a - as core::ops::function::FnOnce<()>>::call_once::hbee49bc759312884 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 37: 0x77df6cdd859a - std::panicking::catch_unwind::do_call::h61de12ce5e04e28f [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:589:40 [INFO] [stdout] 38: 0x77df6cdd859a - std::panicking::catch_unwind::h454dd49873d22e18 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:552:19 [INFO] [stdout] 39: 0x77df6cdd859a - std::panic::catch_unwind::h5c15187324f8cebb [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panic.rs:359:14 [INFO] [stdout] 40: 0x77df6cdd859a - std::thread::Builder::spawn_unchecked_::{{closure}}::hbc9d9c7427673d42 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/thread/mod.rs:557:30 [INFO] [stdout] 41: 0x77df6cdd859a - core::ops::function::FnOnce::call_once{{vtable.shim}}::hefd458a129ddca13 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 42: 0x77df6d1adff7 - as core::ops::function::FnOnce>::call_once::h2d6e2e526b02c3da [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/alloc/src/boxed.rs:1966:9 [INFO] [stdout] 43: 0x77df6d1adff7 - as core::ops::function::FnOnce>::call_once::h1aefced482b33c72 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/alloc/src/boxed.rs:1966:9 [INFO] [stdout] 44: 0x77df6d1adff7 - std::sys::pal::unix::thread::Thread::new::thread_start::h7c9c6951b48f721d [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/pal/unix/thread.rs:97:17 [INFO] [stdout] [INFO] [stdout] ---- io::fastq::tests::test_write_record stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'io::fastq::tests::test_write_record' panicked at src/io/fastq.rs:964:43: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 30, kind: ReadOnlyFilesystem, message: "Read-only file system" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x77df6d1a90b2 - std::backtrace_rs::backtrace::libunwind::trace::h559918daaaf51ab7 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x77df6d1a90b2 - std::backtrace_rs::backtrace::trace_unsynchronized::hb04fbcf80d07af8b [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x77df6d1a90b2 - std::sys::backtrace::_print_fmt::h7c0bbbbfac0065d4 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:66:9 [INFO] [stdout] 3: 0x77df6d1a90b2 - ::fmt::hb62c8ed31943daa5 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:39:26 [INFO] [stdout] 4: 0x77df6d1e82b3 - core::fmt::rt::Argument::fmt::he5eaa7dd607ed4c9 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/fmt/rt.rs:173:76 [INFO] [stdout] 5: 0x77df6d1e82b3 - core::fmt::write::h375399f8cb90b45a [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/fmt/mod.rs:1460:25 [INFO] [stdout] 6: 0x77df6d1a5c83 - std::io::default_write_fmt::hdc1b4dd565dd0099 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x77df6d1a5c83 - std::io::Write::write_fmt::h29f6044e9bc43c23 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/io/mod.rs:1954:13 [INFO] [stdout] 8: 0x77df6d1a8f02 - std::sys::backtrace::BacktraceLock::print::ha189c586374f916a [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:42:9 [INFO] [stdout] 9: 0x77df6d1aa73c - std::panicking::default_hook::{{closure}}::ha3a26c98ff210e12 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:300:27 [INFO] [stdout] 10: 0x77df6d1aa592 - std::panicking::default_hook::h8c8a86b4390ab794 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:324:9 [INFO] [stdout] 11: 0x77df6ce0b5b4 - as core::ops::function::Fn>::call::ha39ae63ed1e9a130 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/alloc/src/boxed.rs:1980:9 [INFO] [stdout] 12: 0x77df6ce0b5b4 - test::test_main_with_exit_callback::{{closure}}::h9df7c328ebe18c28 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x77df6d1ab1a3 - as core::ops::function::Fn>::call::h96b7201b552e9069 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/alloc/src/boxed.rs:1980:9 [INFO] [stdout] 14: 0x77df6d1ab1a3 - std::panicking::rust_panic_with_hook::hb3b66c2e80efa371 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:841:13 [INFO] [stdout] 15: 0x77df6d1aae8a - std::panicking::begin_panic_handler::{{closure}}::h9c68d0f839e62070 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:706:13 [INFO] [stdout] 16: 0x77df6d1a95b9 - std::sys::backtrace::__rust_end_short_backtrace::h68d22ddde4a73ad6 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:168:18 [INFO] [stdout] 17: 0x77df6d1aab1d - __rustc[f4ffc7196a45a630]::rust_begin_unwind [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:697:5 [INFO] [stdout] 18: 0x77df6c8b06c0 - core::panicking::panic_fmt::h8cdd4c81eb9069aa [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/panicking.rs:75:14 [INFO] [stdout] 19: 0x77df6c8b0b26 - core::result::unwrap_failed::h8476ffaa6db8205b [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/result.rs:1761:5 [INFO] [stdout] 20: 0x77df6cd0ea74 - core::result::Result::unwrap::he148933e8c43c095 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/result.rs:1167:23 [INFO] [stdout] 21: 0x77df6cd0ea74 - bio::io::fastq::tests::test_write_record::hbde9f16746c8e10a [INFO] [stdout] at /opt/rustwide/workdir/src/io/fastq.rs:964:43 [INFO] [stdout] 22: 0x77df6cd0e9d7 - bio::io::fastq::tests::test_write_record::{{closure}}::h9cbebc014a91b125 [INFO] [stdout] at /opt/rustwide/workdir/src/io/fastq.rs:962:27 [INFO] [stdout] 23: 0x77df6cb5e6b6 - core::ops::function::FnOnce::call_once::hb91e9d3e9b3389e6 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 24: 0x77df6ce10cab - core::ops::function::FnOnce::call_once::h9633dcf760ae81b2 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x77df6ce10cab - test::__rust_begin_short_backtrace::h12ad5e04c8d7b4a5 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/test/src/lib.rs:648:18 [INFO] [stdout] 26: 0x77df6ce0ff1e - test::run_test_in_process::{{closure}}::he596b4fd3fa4893c [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/test/src/lib.rs:671:74 [INFO] [stdout] 27: 0x77df6ce0ff1e - as core::ops::function::FnOnce<()>>::call_once::hc746bc3fa75190e0 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 28: 0x77df6ce0ff1e - std::panicking::catch_unwind::do_call::hf4843906108d6299 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:589:40 [INFO] [stdout] 29: 0x77df6ce0ff1e - std::panicking::catch_unwind::h849d4e8b03577bb9 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:552:19 [INFO] [stdout] 30: 0x77df6ce0ff1e - std::panic::catch_unwind::ha1f814c1dec025d2 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panic.rs:359:14 [INFO] [stdout] 31: 0x77df6ce0ff1e - test::run_test_in_process::h542aad3fe61255e7 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/test/src/lib.rs:671:27 [INFO] [stdout] 32: 0x77df6ce0ff1e - test::run_test::{{closure}}::h612788d75908cb63 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/test/src/lib.rs:592:43 [INFO] [stdout] 33: 0x77df6cdd4da4 - test::run_test::{{closure}}::hbfeea3bcb7245123 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/test/src/lib.rs:622:41 [INFO] [stdout] 34: 0x77df6cdd4da4 - std::sys::backtrace::__rust_begin_short_backtrace::h72542b83b4f87d5b [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:152:18 [INFO] [stdout] 35: 0x77df6cdd859a - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::hff26a7547ea762c9 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/thread/mod.rs:559:17 [INFO] [stdout] 36: 0x77df6cdd859a - as core::ops::function::FnOnce<()>>::call_once::hbee49bc759312884 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 37: 0x77df6cdd859a - std::panicking::catch_unwind::do_call::h61de12ce5e04e28f [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:589:40 [INFO] [stdout] 38: 0x77df6cdd859a - std::panicking::catch_unwind::h454dd49873d22e18 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:552:19 [INFO] [stdout] 39: 0x77df6cdd859a - std::panic::catch_unwind::h5c15187324f8cebb [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panic.rs:359:14 [INFO] [stdout] 40: 0x77df6cdd859a - std::thread::Builder::spawn_unchecked_::{{closure}}::hbc9d9c7427673d42 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/thread/mod.rs:557:30 [INFO] [stdout] 41: 0x77df6cdd859a - core::ops::function::FnOnce::call_once{{vtable.shim}}::hefd458a129ddca13 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 42: 0x77df6d1adff7 - as core::ops::function::FnOnce>::call_once::h2d6e2e526b02c3da [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/alloc/src/boxed.rs:1966:9 [INFO] [stdout] 43: 0x77df6d1adff7 - as core::ops::function::FnOnce>::call_once::h1aefced482b33c72 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/alloc/src/boxed.rs:1966:9 [INFO] [stdout] 44: 0x77df6d1adff7 - std::sys::pal::unix::thread::Thread::new::thread_start::h7c9c6951b48f721d [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/pal/unix/thread.rs:97:17 [INFO] [stdout] [INFO] [stdout] ---- io::fastx::tests::test_either_records_from_file stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'io::fastx::tests::test_either_records_from_file' panicked at src/io/fastx.rs:781:72: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 30, kind: ReadOnlyFilesystem, message: "Read-only file system" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x77df6d1a90b2 - std::backtrace_rs::backtrace::libunwind::trace::h559918daaaf51ab7 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x77df6d1a90b2 - std::backtrace_rs::backtrace::trace_unsynchronized::hb04fbcf80d07af8b [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x77df6d1a90b2 - std::sys::backtrace::_print_fmt::h7c0bbbbfac0065d4 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:66:9 [INFO] [stdout] 3: 0x77df6d1a90b2 - ::fmt::hb62c8ed31943daa5 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:39:26 [INFO] [stdout] 4: 0x77df6d1e82b3 - core::fmt::rt::Argument::fmt::he5eaa7dd607ed4c9 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/fmt/rt.rs:173:76 [INFO] [stdout] 5: 0x77df6d1e82b3 - core::fmt::write::h375399f8cb90b45a [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/fmt/mod.rs:1460:25 [INFO] [stdout] 6: 0x77df6d1a5c83 - std::io::default_write_fmt::hdc1b4dd565dd0099 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x77df6d1a5c83 - std::io::Write::write_fmt::h29f6044e9bc43c23 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/io/mod.rs:1954:13 [INFO] [stdout] 8: 0x77df6d1a8f02 - std::sys::backtrace::BacktraceLock::print::ha189c586374f916a [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:42:9 [INFO] [stdout] 9: 0x77df6d1aa73c - std::panicking::default_hook::{{closure}}::ha3a26c98ff210e12 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:300:27 [INFO] [stdout] 10: 0x77df6d1aa592 - std::panicking::default_hook::h8c8a86b4390ab794 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:324:9 [INFO] [stdout] 11: 0x77df6ce0b5b4 - as core::ops::function::Fn>::call::ha39ae63ed1e9a130 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/alloc/src/boxed.rs:1980:9 [INFO] [stdout] 12: 0x77df6ce0b5b4 - test::test_main_with_exit_callback::{{closure}}::h9df7c328ebe18c28 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x77df6d1ab1a3 - as core::ops::function::Fn>::call::h96b7201b552e9069 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/alloc/src/boxed.rs:1980:9 [INFO] [stdout] 14: 0x77df6d1ab1a3 - std::panicking::rust_panic_with_hook::hb3b66c2e80efa371 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:841:13 [INFO] [stdout] 15: 0x77df6d1aae8a - std::panicking::begin_panic_handler::{{closure}}::h9c68d0f839e62070 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:706:13 [INFO] [stdout] 16: 0x77df6d1a95b9 - std::sys::backtrace::__rust_end_short_backtrace::h68d22ddde4a73ad6 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:168:18 [INFO] [stdout] 17: 0x77df6d1aab1d - __rustc[f4ffc7196a45a630]::rust_begin_unwind [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:697:5 [INFO] [stdout] 18: 0x77df6c8b06c0 - core::panicking::panic_fmt::h8cdd4c81eb9069aa [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/panicking.rs:75:14 [INFO] [stdout] 19: 0x77df6c8b0b26 - core::result::unwrap_failed::h8476ffaa6db8205b [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/result.rs:1761:5 [INFO] [stdout] 20: 0x77df6cd113a4 - core::result::Result::unwrap::he148933e8c43c095 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/result.rs:1167:23 [INFO] [stdout] 21: 0x77df6cd113a4 - bio::io::fastx::tests::test_either_records_from_file::h1976dd52961a3654 [INFO] [stdout] at /opt/rustwide/workdir/src/io/fastx.rs:781:72 [INFO] [stdout] 22: 0x77df6cd11327 - bio::io::fastx::tests::test_either_records_from_file::{{closure}}::h2f18528ce793c3b1 [INFO] [stdout] at /opt/rustwide/workdir/src/io/fastx.rs:780:39 [INFO] [stdout] 23: 0x77df6cb53b66 - core::ops::function::FnOnce::call_once::h2631d79bb59506b2 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 24: 0x77df6ce10cab - core::ops::function::FnOnce::call_once::h9633dcf760ae81b2 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x77df6ce10cab - test::__rust_begin_short_backtrace::h12ad5e04c8d7b4a5 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/test/src/lib.rs:648:18 [INFO] [stdout] 26: 0x77df6ce0ff1e - test::run_test_in_process::{{closure}}::he596b4fd3fa4893c [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/test/src/lib.rs:671:74 [INFO] [stdout] 27: 0x77df6ce0ff1e - as core::ops::function::FnOnce<()>>::call_once::hc746bc3fa75190e0 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 28: 0x77df6ce0ff1e - std::panicking::catch_unwind::do_call::hf4843906108d6299 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:589:40 [INFO] [stdout] 29: 0x77df6ce0ff1e - std::panicking::catch_unwind::h849d4e8b03577bb9 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:552:19 [INFO] [stdout] 30: 0x77df6ce0ff1e - std::panic::catch_unwind::ha1f814c1dec025d2 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panic.rs:359:14 [INFO] [stdout] 31: 0x77df6ce0ff1e - test::run_test_in_process::h542aad3fe61255e7 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/test/src/lib.rs:671:27 [INFO] [stdout] 32: 0x77df6ce0ff1e - test::run_test::{{closure}}::h612788d75908cb63 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/test/src/lib.rs:592:43 [INFO] [stdout] 33: 0x77df6cdd4da4 - test::run_test::{{closure}}::hbfeea3bcb7245123 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/test/src/lib.rs:622:41 [INFO] [stdout] 34: 0x77df6cdd4da4 - std::sys::backtrace::__rust_begin_short_backtrace::h72542b83b4f87d5b [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:152:18 [INFO] [stdout] 35: 0x77df6cdd859a - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::hff26a7547ea762c9 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/thread/mod.rs:559:17 [INFO] [stdout] 36: 0x77df6cdd859a - as core::ops::function::FnOnce<()>>::call_once::hbee49bc759312884 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 37: 0x77df6cdd859a - std::panicking::catch_unwind::do_call::h61de12ce5e04e28f [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:589:40 [INFO] [stdout] 38: 0x77df6cdd859a - std::panicking::catch_unwind::h454dd49873d22e18 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:552:19 [INFO] [stdout] 39: 0x77df6cdd859a - std::panic::catch_unwind::h5c15187324f8cebb [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panic.rs:359:14 [INFO] [stdout] 40: 0x77df6cdd859a - std::thread::Builder::spawn_unchecked_::{{closure}}::hbc9d9c7427673d42 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/thread/mod.rs:557:30 [INFO] [stdout] 41: 0x77df6cdd859a - core::ops::function::FnOnce::call_once{{vtable.shim}}::hefd458a129ddca13 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 42: 0x77df6d1adff7 - as core::ops::function::FnOnce>::call_once::h2d6e2e526b02c3da [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/alloc/src/boxed.rs:1966:9 [INFO] [stdout] 43: 0x77df6d1adff7 - as core::ops::function::FnOnce>::call_once::h1aefced482b33c72 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/alloc/src/boxed.rs:1966:9 [INFO] [stdout] 44: 0x77df6d1adff7 - std::sys::pal::unix::thread::Thread::new::thread_start::h7c9c6951b48f721d [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/pal/unix/thread.rs:97:17 [INFO] [stdout] [INFO] [stdout] ---- io::fastx::tests::test_get_kind_file stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'io::fastx::tests::test_get_kind_file' panicked at src/io/fastx.rs:868:61: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 30, kind: ReadOnlyFilesystem, message: "Read-only file system" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x77df6d1a90b2 - std::backtrace_rs::backtrace::libunwind::trace::h559918daaaf51ab7 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x77df6d1a90b2 - std::backtrace_rs::backtrace::trace_unsynchronized::hb04fbcf80d07af8b [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x77df6d1a90b2 - std::sys::backtrace::_print_fmt::h7c0bbbbfac0065d4 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:66:9 [INFO] [stdout] 3: 0x77df6d1a90b2 - ::fmt::hb62c8ed31943daa5 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:39:26 [INFO] [stdout] 4: 0x77df6d1e82b3 - core::fmt::rt::Argument::fmt::he5eaa7dd607ed4c9 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/fmt/rt.rs:173:76 [INFO] [stdout] 5: 0x77df6d1e82b3 - core::fmt::write::h375399f8cb90b45a [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/fmt/mod.rs:1460:25 [INFO] [stdout] 6: 0x77df6d1a5c83 - std::io::default_write_fmt::hdc1b4dd565dd0099 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x77df6d1a5c83 - std::io::Write::write_fmt::h29f6044e9bc43c23 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/io/mod.rs:1954:13 [INFO] [stdout] 8: 0x77df6d1a8f02 - std::sys::backtrace::BacktraceLock::print::ha189c586374f916a [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:42:9 [INFO] [stdout] 9: 0x77df6d1aa73c - std::panicking::default_hook::{{closure}}::ha3a26c98ff210e12 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:300:27 [INFO] [stdout] 10: 0x77df6d1aa592 - std::panicking::default_hook::h8c8a86b4390ab794 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:324:9 [INFO] [stdout] 11: 0x77df6ce0b5b4 - as core::ops::function::Fn>::call::ha39ae63ed1e9a130 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/alloc/src/boxed.rs:1980:9 [INFO] [stdout] 12: 0x77df6ce0b5b4 - test::test_main_with_exit_callback::{{closure}}::h9df7c328ebe18c28 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x77df6d1ab1a3 - as core::ops::function::Fn>::call::h96b7201b552e9069 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/alloc/src/boxed.rs:1980:9 [INFO] [stdout] 14: 0x77df6d1ab1a3 - std::panicking::rust_panic_with_hook::hb3b66c2e80efa371 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:841:13 [INFO] [stdout] 15: 0x77df6d1aae8a - std::panicking::begin_panic_handler::{{closure}}::h9c68d0f839e62070 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:706:13 [INFO] [stdout] 16: 0x77df6d1a95b9 - std::sys::backtrace::__rust_end_short_backtrace::h68d22ddde4a73ad6 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:168:18 [INFO] [stdout] 17: 0x77df6d1aab1d - __rustc[f4ffc7196a45a630]::rust_begin_unwind [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:697:5 [INFO] [stdout] 18: 0x77df6c8b06c0 - core::panicking::panic_fmt::h8cdd4c81eb9069aa [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/panicking.rs:75:14 [INFO] [stdout] 19: 0x77df6c8b0b26 - core::result::unwrap_failed::h8476ffaa6db8205b [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/result.rs:1761:5 [INFO] [stdout] 20: 0x77df6cd13001 - core::result::Result::unwrap::he148933e8c43c095 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/result.rs:1167:23 [INFO] [stdout] 21: 0x77df6cd13001 - bio::io::fastx::tests::test_get_kind_file::h3ecacbe92393b29b [INFO] [stdout] at /opt/rustwide/workdir/src/io/fastx.rs:868:61 [INFO] [stdout] 22: 0x77df6cd12f87 - bio::io::fastx::tests::test_get_kind_file::{{closure}}::h0021e80445c63da7 [INFO] [stdout] at /opt/rustwide/workdir/src/io/fastx.rs:867:28 [INFO] [stdout] 23: 0x77df6cb53ff6 - core::ops::function::FnOnce::call_once::h2cf426db99a6fb6a [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 24: 0x77df6ce10cab - core::ops::function::FnOnce::call_once::h9633dcf760ae81b2 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x77df6ce10cab - test::__rust_begin_short_backtrace::h12ad5e04c8d7b4a5 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/test/src/lib.rs:648:18 [INFO] [stdout] 26: 0x77df6ce0ff1e - test::run_test_in_process::{{closure}}::he596b4fd3fa4893c [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/test/src/lib.rs:671:74 [INFO] [stdout] 27: 0x77df6ce0ff1e - as core::ops::function::FnOnce<()>>::call_once::hc746bc3fa75190e0 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 28: 0x77df6ce0ff1e - std::panicking::catch_unwind::do_call::hf4843906108d6299 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:589:40 [INFO] [stdout] 29: 0x77df6ce0ff1e - std::panicking::catch_unwind::h849d4e8b03577bb9 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:552:19 [INFO] [stdout] 30: 0x77df6ce0ff1e - std::panic::catch_unwind::ha1f814c1dec025d2 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panic.rs:359:14 [INFO] [stdout] 31: 0x77df6ce0ff1e - test::run_test_in_process::h542aad3fe61255e7 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/test/src/lib.rs:671:27 [INFO] [stdout] 32: 0x77df6ce0ff1e - test::run_test::{{closure}}::h612788d75908cb63 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/test/src/lib.rs:592:43 [INFO] [stdout] 33: 0x77df6cdd4da4 - test::run_test::{{closure}}::hbfeea3bcb7245123 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/test/src/lib.rs:622:41 [INFO] [stdout] 34: 0x77df6cdd4da4 - std::sys::backtrace::__rust_begin_short_backtrace::h72542b83b4f87d5b [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:152:18 [INFO] [stdout] 35: 0x77df6cdd859a - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::hff26a7547ea762c9 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/thread/mod.rs:559:17 [INFO] [stdout] 36: 0x77df6cdd859a - as core::ops::function::FnOnce<()>>::call_once::hbee49bc759312884 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 37: 0x77df6cdd859a - std::panicking::catch_unwind::do_call::h61de12ce5e04e28f [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:589:40 [INFO] [stdout] 38: 0x77df6cdd859a - std::panicking::catch_unwind::h454dd49873d22e18 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:552:19 [INFO] [stdout] 39: 0x77df6cdd859a - std::panic::catch_unwind::h5c15187324f8cebb [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panic.rs:359:14 [INFO] [stdout] 40: 0x77df6cdd859a - std::thread::Builder::spawn_unchecked_::{{closure}}::hbc9d9c7427673d42 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/thread/mod.rs:557:30 [INFO] [stdout] 41: 0x77df6cdd859a - core::ops::function::FnOnce::call_once{{vtable.shim}}::hefd458a129ddca13 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 42: 0x77df6d1adff7 - as core::ops::function::FnOnce>::call_once::h2d6e2e526b02c3da [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/alloc/src/boxed.rs:1966:9 [INFO] [stdout] 43: 0x77df6d1adff7 - as core::ops::function::FnOnce>::call_once::h1aefced482b33c72 [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/alloc/src/boxed.rs:1966:9 [INFO] [stdout] 44: 0x77df6d1adff7 - std::sys::pal::unix::thread::Thread::new::thread_start::h7c9c6951b48f721d [INFO] [stdout] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/pal/unix/thread.rs:97:17 [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] io::fasta::tests::test_write_record [INFO] [stdout] io::fastq::tests::test_write_record [INFO] [stdout] io::fastx::tests::test_either_records_from_file [INFO] [stdout] io::fastx::tests::test_get_kind_file [INFO] [stdout] [INFO] [stdout] test result: FAILED. 438 passed; 4 failed; 0 ignored; 0 measured; 0 filtered out; finished in 13.89s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass `--lib` [INFO] running `Command { std: "docker" "inspect" "ed38dda014764ade305e97b85084acd00e76a7969a16af65e4dd839b8dcb84bb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ed38dda014764ade305e97b85084acd00e76a7969a16af65e4dd839b8dcb84bb", kill_on_drop: false }` [INFO] [stdout] ed38dda014764ade305e97b85084acd00e76a7969a16af65e4dd839b8dcb84bb