[INFO] fetching crate bamlift 0.3.0...
[INFO] testing bamlift-0.3.0 against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_with_libc_patch_0
[INFO] extracting crate bamlift 0.3.0 into /workspace/builds/worker-1-tc1/source
[INFO] started tweaking crates.io crate bamlift 0.3.0
[INFO] finished tweaking crates.io crate bamlift 0.3.0
[INFO] tweaked toml for crates.io crate bamlift 0.3.0 written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate bamlift 0.3.0 on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]      Locking 102 packages to latest compatible versions
[INFO] [stderr]       Adding env_logger v0.9.3 (available: v0.11.8)
[INFO] [stderr]       Adding itertools v0.10.5 (available: v0.14.0)
[INFO] [stderr]       Adding rust-htslib v0.44.1 (available: v0.49.0)
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded rust-htslib v0.44.1
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 1fe0c27932cf54037f31448590d1b0ff1daea6f1959e88c31be57d638794ad29
[INFO] running `Command { std: "docker" "start" "-a" "1fe0c27932cf54037f31448590d1b0ff1daea6f1959e88c31be57d638794ad29", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "1fe0c27932cf54037f31448590d1b0ff1daea6f1959e88c31be57d638794ad29", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1fe0c27932cf54037f31448590d1b0ff1daea6f1959e88c31be57d638794ad29", kill_on_drop: false }`
[INFO] [stdout] 1fe0c27932cf54037f31448590d1b0ff1daea6f1959e88c31be57d638794ad29
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] 0e99a45e171ef8ec64dab6e6bbfe39d72a256c6b039265812cc9e1a310049691
[INFO] running `Command { std: "docker" "start" "-a" "0e99a45e171ef8ec64dab6e6bbfe39d72a256c6b039265812cc9e1a310049691", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.95
[INFO] [stderr]    Compiling unicode-ident v1.0.18
[INFO] [stderr]    Compiling libc v0.2.174
[INFO] [stderr]    Compiling shlex v1.3.0
[INFO] [stderr]    Compiling pkg-config v0.3.32
[INFO] [stderr]    Compiling stable_deref_trait v1.2.0
[INFO] [stderr]    Compiling vcpkg v0.2.15
[INFO] [stderr]    Compiling litemap v0.8.0
[INFO] [stderr]    Compiling writeable v0.6.1
[INFO] [stderr]    Compiling icu_properties_data v2.0.1
[INFO] [stderr]    Compiling icu_normalizer_data v2.0.0
[INFO] [stderr]    Compiling memchr v2.7.5
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling regex-syntax v0.8.5
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling smallvec v1.15.1
[INFO] [stderr]    Compiling rustversion v1.0.21
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling glob v0.3.2
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling percent-encoding v2.3.1
[INFO] [stderr]    Compiling utf8_iter v1.0.4
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]    Compiling lazy_static v1.5.0
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling humantime v2.2.0
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling form_urlencoded v1.2.1
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling byteorder v1.5.0
[INFO] [stderr]    Compiling termcolor v1.4.1
[INFO] [stderr]    Compiling log v0.4.27
[INFO] [stderr]    Compiling quote v1.0.40
[INFO] [stderr]    Compiling itertools v0.10.5
[INFO] [stderr]    Compiling jobserver v0.1.33
[INFO] [stderr]    Compiling syn v2.0.104
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling cc v1.2.27
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling openssl-src v300.5.0+3.5.0
[INFO] [stderr]    Compiling cmake v0.1.54
[INFO] [stderr]    Compiling openssl-sys v0.9.109
[INFO] [stderr]    Compiling libz-sys v1.1.22
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling curl-sys v0.4.82+curl-8.14.1
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling yoke-derive v0.8.0
[INFO] [stderr]    Compiling zerovec-derive v0.11.1
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling env_logger v0.9.3
[INFO] [stderr]    Compiling zerofrom v0.1.6
[INFO] [stderr]    Compiling yoke v0.8.0
[INFO] [stderr]    Compiling zerovec v0.11.2
[INFO] [stderr]    Compiling zerotrie v0.2.2
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling tinystr v0.8.1
[INFO] [stderr]    Compiling potential_utf v0.1.2
[INFO] [stderr]    Compiling icu_collections v2.0.0
[INFO] [stderr]    Compiling icu_locale_core v2.0.0
[INFO] [stderr]    Compiling icu_provider v2.0.0
[INFO] [stderr]    Compiling icu_properties v2.0.1
[INFO] [stderr]    Compiling icu_normalizer v2.0.0
[INFO] [stderr]    Compiling idna_adapter v1.2.1
[INFO] [stderr]    Compiling idna v1.0.3
[INFO] [stderr]    Compiling url v2.5.4
[INFO] [stderr]    Compiling rust-htslib v0.44.1
[INFO] [stderr]    Compiling bamlift v0.3.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 27s
[INFO] running `Command { std: "docker" "inspect" "0e99a45e171ef8ec64dab6e6bbfe39d72a256c6b039265812cc9e1a310049691", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0e99a45e171ef8ec64dab6e6bbfe39d72a256c6b039265812cc9e1a310049691", kill_on_drop: false }`
[INFO] [stdout] 0e99a45e171ef8ec64dab6e6bbfe39d72a256c6b039265812cc9e1a310049691
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] 55a941cc4062829f264c12c671a558c02cb91fd296626b17b4efcf3fb894741b
[INFO] running `Command { std: "docker" "start" "-a" "55a941cc4062829f264c12c671a558c02cb91fd296626b17b4efcf3fb894741b", kill_on_drop: false }`
[INFO] [stderr]    Compiling bamlift v0.3.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 2.09s
[INFO] running `Command { std: "docker" "inspect" "55a941cc4062829f264c12c671a558c02cb91fd296626b17b4efcf3fb894741b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "55a941cc4062829f264c12c671a558c02cb91fd296626b17b4efcf3fb894741b", kill_on_drop: false }`
[INFO] [stdout] 55a941cc4062829f264c12c671a558c02cb91fd296626b17b4efcf3fb894741b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] 138c8dff636caced84918bb85a4948e7e105c6a91caa9004d4fa797431b4edb7
[INFO] running `Command { std: "docker" "start" "-a" "138c8dff636caced84918bb85a4948e7e105c6a91caa9004d4fa797431b4edb7", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.12s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/bamlift-02f4df7d580763be)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/test-liftover.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/test_liftover-90ca3f5d2bf01c5b)
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test test_lift_reference_positions ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "138c8dff636caced84918bb85a4948e7e105c6a91caa9004d4fa797431b4edb7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "138c8dff636caced84918bb85a4948e7e105c6a91caa9004d4fa797431b4edb7", kill_on_drop: false }`
[INFO] [stdout] 138c8dff636caced84918bb85a4948e7e105c6a91caa9004d4fa797431b4edb7