[INFO] fetching crate bam-builder 1.0.0... [INFO] testing bam-builder-1.0.0 against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_with_libc_patch_0 [INFO] extracting crate bam-builder 1.0.0 into /workspace/builds/worker-6-tc1/source [INFO] started tweaking crates.io crate bam-builder 1.0.0 [INFO] finished tweaking crates.io crate bam-builder 1.0.0 [INFO] tweaked toml for crates.io crate bam-builder 1.0.0 written to /workspace/builds/worker-6-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate bam-builder 1.0.0 on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate bam-builder 1.0.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded linear-map v1.2.0 [INFO] [stderr] Downloaded strum_macros v0.25.2 [INFO] [stderr] Downloaded bio-types v1.0.1 [INFO] [stderr] Downloaded rust-htslib v0.44.1 [INFO] [stderr] Downloaded regex v1.9.5 [INFO] [stderr] Downloaded rustix v0.38.14 [INFO] [stderr] Downloaded libz-sys v1.1.12 [INFO] [stderr] Downloaded curl-sys v0.4.66+curl-8.3.0 [INFO] [stderr] Downloaded hts-sys v2.1.1 [INFO] [stderr] Downloaded openssl-src v300.1.5+3.1.3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 85ba9c03a9edc57d6cc49bccdd5ff86bf3445daeceda518707473320750cac1f [INFO] running `Command { std: "docker" "start" "-a" "85ba9c03a9edc57d6cc49bccdd5ff86bf3445daeceda518707473320750cac1f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "85ba9c03a9edc57d6cc49bccdd5ff86bf3445daeceda518707473320750cac1f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "85ba9c03a9edc57d6cc49bccdd5ff86bf3445daeceda518707473320750cac1f", kill_on_drop: false }` [INFO] [stdout] 85ba9c03a9edc57d6cc49bccdd5ff86bf3445daeceda518707473320750cac1f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 88ffa362942e24f6e5356d8a56039d49d5ab8907d9e391687471655c293afb5e [INFO] running `Command { std: "docker" "start" "-a" "88ffa362942e24f6e5356d8a56039d49d5ab8907d9e391687471655c293afb5e", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.148 [INFO] [stderr] Compiling pkg-config v0.3.27 [INFO] [stderr] Compiling proc-macro2 v1.0.67 [INFO] [stderr] Compiling unicode-ident v1.0.12 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling ident_case v1.0.1 [INFO] [stderr] Compiling fnv v1.0.7 [INFO] [stderr] Compiling strsim v0.10.0 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling tinyvec_macros v0.1.1 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling rustversion v1.0.14 [INFO] [stderr] Compiling memchr v2.6.3 [INFO] [stderr] Compiling thiserror v1.0.49 [INFO] [stderr] Compiling regex-syntax v0.7.5 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling tinyvec v1.6.0 [INFO] [stderr] Compiling glob v0.3.1 [INFO] [stderr] Compiling percent-encoding v2.3.0 [INFO] [stderr] Compiling rustix v0.38.14 [INFO] [stderr] Compiling unicode-bidi v0.3.13 [INFO] [stderr] Compiling heck v0.4.1 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling form_urlencoded v1.2.0 [INFO] [stderr] Compiling bitflags v2.4.0 [INFO] [stderr] Compiling linux-raw-sys v0.4.7 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling ppv-lite86 v0.2.17 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling fastrand v2.0.1 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling byteorder v1.4.3 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling aho-corasick v1.1.1 [INFO] [stderr] Compiling unicode-normalization v0.1.22 [INFO] [stderr] Compiling quote v1.0.33 [INFO] [stderr] Compiling syn v2.0.37 [INFO] [stderr] Compiling idna v0.4.0 [INFO] [stderr] Compiling getrandom v0.2.10 [INFO] [stderr] Compiling jobserver v0.1.26 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling cc v1.0.83 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling regex-automata v0.3.8 [INFO] [stderr] Compiling url v2.4.1 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling cmake v0.1.50 [INFO] [stderr] Compiling openssl-src v300.1.5+3.1.3 [INFO] [stderr] Compiling tempfile v3.8.0 [INFO] [stderr] Compiling libz-sys v1.1.12 [INFO] [stderr] Compiling openssl-sys v0.9.93 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling curl-sys v0.4.66+curl-8.3.0 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling hts-sys v2.1.1 [INFO] [stderr] Compiling thiserror-impl v1.0.49 [INFO] [stderr] Compiling strum_macros v0.25.2 [INFO] [stderr] Compiling darling_core v0.14.4 [INFO] [stderr] Compiling regex v1.9.5 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling darling_macro v0.14.4 [INFO] [stderr] Compiling bio-types v1.0.1 [INFO] [stderr] Compiling darling v0.14.4 [INFO] [stderr] Compiling derive_builder_core v0.12.0 [INFO] [stderr] Compiling derive_builder_macro v0.12.0 [INFO] [stderr] Compiling derive_builder v0.12.0 [INFO] [stderr] Compiling rust-htslib v0.44.1 [INFO] [stderr] Compiling bam-builder v1.0.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 58s [INFO] running `Command { std: "docker" "inspect" "88ffa362942e24f6e5356d8a56039d49d5ab8907d9e391687471655c293afb5e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "88ffa362942e24f6e5356d8a56039d49d5ab8907d9e391687471655c293afb5e", kill_on_drop: false }` [INFO] [stdout] 88ffa362942e24f6e5356d8a56039d49d5ab8907d9e391687471655c293afb5e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 24b56b61aa4e0d1979f877557e82d6134061a472edee7b683ba7a1cae1a326ef [INFO] running `Command { std: "docker" "start" "-a" "24b56b61aa4e0d1979f877557e82d6134061a472edee7b683ba7a1cae1a326ef", kill_on_drop: false }` [INFO] [stderr] Compiling bam-builder v1.0.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 2.71s [INFO] running `Command { std: "docker" "inspect" "24b56b61aa4e0d1979f877557e82d6134061a472edee7b683ba7a1cae1a326ef", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "24b56b61aa4e0d1979f877557e82d6134061a472edee7b683ba7a1cae1a326ef", kill_on_drop: false }` [INFO] [stdout] 24b56b61aa4e0d1979f877557e82d6134061a472edee7b683ba7a1cae1a326ef [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 4dce76463e569e4f9610fc34f88cfe43b1328e8bd8cd744fa26761459d36621c [INFO] running `Command { std: "docker" "start" "-a" "4dce76463e569e4f9610fc34f88cfe43b1328e8bd8cd744fa26761459d36621c", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.12s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/bam_builder-7021003f9f9afc68) [INFO] [stdout] [INFO] [stdout] running 2 tests [INFO] [stdout] test tests::check_improper_pair ... ok [INFO] [stdout] test tests::check_proper_pairs ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "4dce76463e569e4f9610fc34f88cfe43b1328e8bd8cd744fa26761459d36621c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4dce76463e569e4f9610fc34f88cfe43b1328e8bd8cd744fa26761459d36621c", kill_on_drop: false }` [INFO] [stdout] 4dce76463e569e4f9610fc34f88cfe43b1328e8bd8cd744fa26761459d36621c