[INFO] fetching crate atglib 0.2.3... [INFO] testing atglib-0.2.3 against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_with_libc_patch_0 [INFO] extracting crate atglib 0.2.3 into /workspace/builds/worker-0-tc1/source [INFO] started tweaking crates.io crate atglib 0.2.3 [INFO] finished tweaking crates.io crate atglib 0.2.3 [INFO] tweaked toml for crates.io crate atglib 0.2.3 written to /workspace/builds/worker-0-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate atglib 0.2.3 on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 76 packages to latest compatible versions [INFO] [stderr] Adding criterion v0.4.0 (available: v0.6.0) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 9e2ff4f383bb1c8eb531d07bb503697c206c0b16491e235d075d6cdb015d1d3e [INFO] running `Command { std: "docker" "start" "-a" "9e2ff4f383bb1c8eb531d07bb503697c206c0b16491e235d075d6cdb015d1d3e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "9e2ff4f383bb1c8eb531d07bb503697c206c0b16491e235d075d6cdb015d1d3e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9e2ff4f383bb1c8eb531d07bb503697c206c0b16491e235d075d6cdb015d1d3e", kill_on_drop: false }` [INFO] [stdout] 9e2ff4f383bb1c8eb531d07bb503697c206c0b16491e235d075d6cdb015d1d3e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] f131663dacd63bb39e3e8114ae2f92bde00490826807da6ad047ae1b39f2ce5c [INFO] running `Command { std: "docker" "start" "-a" "f131663dacd63bb39e3e8114ae2f92bde00490826807da6ad047ae1b39f2ce5c", kill_on_drop: false }` [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Compiling syn v2.0.104 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling atglib v0.2.3 (/opt/rustwide/workdir) [INFO] [stdout] warning: unexpected `cfg` condition value: `with-bench` [INFO] [stdout] --> src/gtf/record.rs:742:17 [INFO] [stdout] | [INFO] [stdout] 742 | #[cfg(all(test, feature = "with-bench"))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ help: remove the condition [INFO] [stdout] | [INFO] [stdout] = note: no expected values for `feature` [INFO] [stdout] = help: consider adding `with-bench` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/models/transcript.rs:285:29 [INFO] [stdout] | [INFO] [stdout] 285 | pub fn exon_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ---------------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 285 | pub fn exon_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/models/transcript.rs:297:28 [INFO] [stdout] | [INFO] [stdout] 297 | pub fn cds_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ---------------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 297 | pub fn cds_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/models/transcript.rs:316:28 [INFO] [stdout] | [INFO] [stdout] 316 | pub fn utr_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ---------------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 316 | pub fn utr_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/models/transcript.rs:342:29 [INFO] [stdout] | [INFO] [stdout] 342 | pub fn utr5_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ---------------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 342 | pub fn utr5_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/models/transcript.rs:364:29 [INFO] [stdout] | [INFO] [stdout] 364 | pub fn utr3_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ---------------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 364 | pub fn utr3_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 12.42s [INFO] running `Command { std: "docker" "inspect" "f131663dacd63bb39e3e8114ae2f92bde00490826807da6ad047ae1b39f2ce5c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f131663dacd63bb39e3e8114ae2f92bde00490826807da6ad047ae1b39f2ce5c", kill_on_drop: false }` [INFO] [stdout] f131663dacd63bb39e3e8114ae2f92bde00490826807da6ad047ae1b39f2ce5c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] d4653b5713470b8b90fe72d82d93705e499b3547c97ef5b70c9b12a19c7a87de [INFO] running `Command { std: "docker" "start" "-a" "d4653b5713470b8b90fe72d82d93705e499b3547c97ef5b70c9b12a19c7a87de", kill_on_drop: false }` [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling serde_json v1.0.140 [INFO] [stderr] Compiling libc v0.2.174 [INFO] [stderr] Compiling os_str_bytes v6.6.1 [INFO] [stderr] Compiling memchr v2.7.5 [INFO] [stderr] Compiling plotters-backend v0.3.7 [INFO] [stderr] Compiling hashbrown v0.12.3 [INFO] [stderr] Compiling itoa v1.0.15 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling indexmap v1.9.3 [INFO] [stderr] Compiling half v2.6.0 [INFO] [stderr] Compiling crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling ciborium-io v0.2.2 [INFO] [stderr] Compiling ryu v1.0.20 [INFO] [stderr] Compiling cast v0.3.0 [INFO] [stderr] Compiling clap_lex v0.2.4 [INFO] [stderr] Compiling textwrap v0.16.2 [INFO] [stderr] Compiling plotters-svg v0.3.7 [INFO] [stderr] Compiling same-file v1.0.6 [INFO] [stderr] Compiling crossbeam-deque v0.8.6 [INFO] [stderr] Compiling itertools v0.10.5 [INFO] [stderr] Compiling walkdir v2.5.0 [INFO] [stderr] Compiling oorandom v11.1.5 [INFO] [stderr] Compiling anes v0.1.6 [INFO] [stderr] Compiling ciborium-ll v0.2.2 [INFO] [stderr] Compiling clap v3.2.25 [INFO] [stderr] Compiling plotters v0.3.7 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling criterion-plot v0.5.0 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling ciborium v0.2.2 [INFO] [stderr] Compiling atglib v0.2.3 (/opt/rustwide/workdir) [INFO] [stdout] warning: unexpected `cfg` condition value: `with-bench` [INFO] [stdout] --> src/gtf/record.rs:742:17 [INFO] [stdout] | [INFO] [stdout] 742 | #[cfg(all(test, feature = "with-bench"))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ help: remove the condition [INFO] [stdout] | [INFO] [stdout] = note: no expected values for `feature` [INFO] [stdout] = help: consider adding `with-bench` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/models/transcript.rs:285:29 [INFO] [stdout] | [INFO] [stdout] 285 | pub fn exon_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ---------------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 285 | pub fn exon_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/models/transcript.rs:297:28 [INFO] [stdout] | [INFO] [stdout] 297 | pub fn cds_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ---------------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 297 | pub fn cds_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/models/transcript.rs:316:28 [INFO] [stdout] | [INFO] [stdout] 316 | pub fn utr_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ---------------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 316 | pub fn utr_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/models/transcript.rs:342:29 [INFO] [stdout] | [INFO] [stdout] 342 | pub fn utr5_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ---------------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 342 | pub fn utr5_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/models/transcript.rs:364:29 [INFO] [stdout] | [INFO] [stdout] 364 | pub fn utr3_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ---------------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 364 | pub fn utr3_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling tinytemplate v1.2.1 [INFO] [stderr] Compiling criterion v0.4.0 [INFO] [stdout] warning: unexpected `cfg` condition value: `with-bench` [INFO] [stdout] --> src/gtf/record.rs:742:17 [INFO] [stdout] | [INFO] [stdout] 742 | #[cfg(all(test, feature = "with-bench"))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ help: remove the condition [INFO] [stdout] | [INFO] [stdout] = note: no expected values for `feature` [INFO] [stdout] = help: consider adding `with-bench` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/models/transcript.rs:285:29 [INFO] [stdout] | [INFO] [stdout] 285 | pub fn exon_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ---------------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 285 | pub fn exon_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/models/transcript.rs:297:28 [INFO] [stdout] | [INFO] [stdout] 297 | pub fn cds_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ---------------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 297 | pub fn cds_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/models/transcript.rs:316:28 [INFO] [stdout] | [INFO] [stdout] 316 | pub fn utr_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ---------------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 316 | pub fn utr_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/models/transcript.rs:342:29 [INFO] [stdout] | [INFO] [stdout] 342 | pub fn utr5_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ---------------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 342 | pub fn utr5_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/models/transcript.rs:364:29 [INFO] [stdout] | [INFO] [stdout] 364 | pub fn utr3_coordinates(&self) -> CoordinateVector { [INFO] [stdout] | ^^^^^ ---------------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 364 | pub fn utr3_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 23.26s [INFO] running `Command { std: "docker" "inspect" "d4653b5713470b8b90fe72d82d93705e499b3547c97ef5b70c9b12a19c7a87de", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d4653b5713470b8b90fe72d82d93705e499b3547c97ef5b70c9b12a19c7a87de", kill_on_drop: false }` [INFO] [stdout] d4653b5713470b8b90fe72d82d93705e499b3547c97ef5b70c9b12a19c7a87de [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 7288fc1f43f3fe5e9418ff1081a1ecc937934ce67865816c6ca968dbce4341b2 [INFO] running `Command { std: "docker" "start" "-a" "7288fc1f43f3fe5e9418ff1081a1ecc937934ce67865816c6ca968dbce4341b2", kill_on_drop: false }` [INFO] [stderr] warning: unexpected `cfg` condition value: `with-bench` [INFO] [stderr] --> src/gtf/record.rs:742:17 [INFO] [stderr] | [INFO] [stderr] 742 | #[cfg(all(test, feature = "with-bench"))] [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^ help: remove the condition [INFO] [stderr] | [INFO] [stderr] = note: no expected values for `feature` [INFO] [stderr] = help: consider adding `with-bench` as a feature in `Cargo.toml` [INFO] [stderr] = note: see for more information about checking conditional configuration [INFO] [stderr] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stderr] [INFO] [stderr] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stderr] --> src/models/transcript.rs:285:29 [INFO] [stderr] | [INFO] [stderr] 285 | pub fn exon_coordinates(&self) -> CoordinateVector { [INFO] [stderr] | ^^^^^ ---------------- the lifetime gets resolved as `'_` [INFO] [stderr] | | [INFO] [stderr] | this lifetime flows to the output [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stderr] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stderr] | [INFO] [stderr] 285 | pub fn exon_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stderr] | ++++ [INFO] [stderr] [INFO] [stderr] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stderr] --> src/models/transcript.rs:297:28 [INFO] [stderr] | [INFO] [stderr] 297 | pub fn cds_coordinates(&self) -> CoordinateVector { [INFO] [stderr] | ^^^^^ ---------------- the lifetime gets resolved as `'_` [INFO] [stderr] | | [INFO] [stderr] | this lifetime flows to the output [INFO] [stderr] | [INFO] [stderr] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stderr] | [INFO] [stderr] 297 | pub fn cds_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stderr] | ++++ [INFO] [stderr] [INFO] [stderr] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stderr] --> src/models/transcript.rs:316:28 [INFO] [stderr] | [INFO] [stderr] 316 | pub fn utr_coordinates(&self) -> CoordinateVector { [INFO] [stderr] | ^^^^^ ---------------- the lifetime gets resolved as `'_` [INFO] [stderr] | | [INFO] [stderr] | this lifetime flows to the output [INFO] [stderr] | [INFO] [stderr] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stderr] | [INFO] [stderr] 316 | pub fn utr_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stderr] | ++++ [INFO] [stderr] [INFO] [stderr] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stderr] --> src/models/transcript.rs:342:29 [INFO] [stderr] | [INFO] [stderr] 342 | pub fn utr5_coordinates(&self) -> CoordinateVector { [INFO] [stderr] | ^^^^^ ---------------- the lifetime gets resolved as `'_` [INFO] [stderr] | | [INFO] [stderr] | this lifetime flows to the output [INFO] [stderr] | [INFO] [stderr] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stderr] | [INFO] [stderr] 342 | pub fn utr5_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stderr] | ++++ [INFO] [stderr] [INFO] [stderr] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stderr] --> src/models/transcript.rs:364:29 [INFO] [stderr] | [INFO] [stderr] 364 | pub fn utr3_coordinates(&self) -> CoordinateVector { [INFO] [stderr] | ^^^^^ ---------------- the lifetime gets resolved as `'_` [INFO] [stderr] | | [INFO] [stderr] | this lifetime flows to the output [INFO] [stderr] | [INFO] [stderr] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stderr] | [INFO] [stderr] 364 | pub fn utr3_coordinates(&self) -> CoordinateVector<'_> { [INFO] [stderr] | ++++ [INFO] [stderr] [INFO] [stderr] warning: `atglib` (lib) generated 6 warnings (run `cargo fix --lib -p atglib` to apply 5 suggestions) [INFO] [stderr] warning: `atglib` (lib test) generated 6 warnings (6 duplicates) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.11s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/atglib-e6ac6091578a4834) [INFO] [stdout] [INFO] [stdout] running 132 tests [INFO] [stdout] test fasta::reader::tests::test_fai_errors ... ok [INFO] [stdout] test fasta::reader::tests::test_fai_reading ... ok [INFO] [stdout] test genepred::writer::tests::test_nm_001365057 ... ok [INFO] [stdout] test fasta::reader::tests::test_fasta_reading ... ok [INFO] [stdout] test genepred::writer::tests::test_nm_201550 ... ok [INFO] [stdout] test genepredext::reader::tests::test_nm_001371720 ... ok [INFO] [stdout] test genepredext::reader::tests::test_nm_001365057 ... ok [INFO] [stdout] test fasta::writer::tests::test_sequence_building ... ok [INFO] [stdout] test genepredext::reader::tests::test_nm_201550 ... ok [INFO] [stdout] test genepred::writer::tests::test_nm_001371720 ... ok [INFO] [stdout] test genepredext::writer::tests::test_nm_001365408 ... ok [INFO] [stdout] test genepredext::writer::tests::test_nm_001365057 ... ok [INFO] [stdout] test fasta::writer::tests::test_creating_writer ... ok [INFO] [stdout] test genepredext::writer::tests::test_nm_201550 ... ok [INFO] [stdout] test genepredext::writer::tests::test_nm_001371720 ... ok [INFO] [stdout] test gtf::reader::tests::test_5_utr ... ok [INFO] [stdout] test gtf::reader::test_nm_201550::test_read ... ok [INFO] [stdout] test gtf::reader::tests::test_gene_line_contains_invalid_data ... ok [INFO] [stdout] test gtf::reader::tests::test_3_utr ... ok [INFO] [stdout] test gtf::reader::test_nm_001385228::test_read ... ok [INFO] [stdout] test genepred::writer::tests::test_nm_001365408 ... ok [INFO] [stdout] test genepredext::reader::tests::test_nm_001365408 ... ok [INFO] [stdout] test gtf::reader::test_ighm::test_read ... ok [INFO] [stdout] test gtf::reader::tests::test_gene_line_returns_none ... ok [INFO] [stdout] test gtf::reader::tests::test_nm_001365057 ... ok [INFO] [stdout] test gtf::reader::tests::test_nm_001371720 ... ok [INFO] [stdout] test gtf::reader::tests::test_utr ... ok [INFO] [stdout] test gtf::reader::tests::test_nm_201550 ... ok [INFO] [stdout] test gtf::reader::tests::test_gene_line_is_skipped ... ok [INFO] [stdout] test gtf::reader::tests::test_nm_001365408 ... ok [INFO] [stdout] test gtf::reader::tests::test_without_gene_or_transcript_errors ... ok [INFO] [stdout] test gtf::record::tests::test_attributes_parsing ... ok [INFO] [stdout] test gtf::record::tests::test_single_attribute_parsing ... ok [INFO] [stdout] test models::genetic_code::tests::test_mito_stop_codon ... ok [INFO] [stdout] test gtf::writer::tests::test_nm_001365057 ... ok [INFO] [stdout] test gtf::writer::tests::test_nm_001365408 ... ok [INFO] [stdout] test models::genetic_code::tests::test_reverse_lookup ... ok [INFO] [stdout] test models::genetic_code::tests::test_start_codon ... ok [INFO] [stdout] test models::genetic_code::tests::test_stop_codon ... ok [INFO] [stdout] test models::genetic_code::tests::test_transcript ... ok [INFO] [stdout] test models::sequence::tests::test_chunks ... ok [INFO] [stdout] test models::sequence::tests::test_contains ... ok [INFO] [stdout] test gtf::writer::tests::test_nm_001371720 ... ok [INFO] [stdout] test models::sequence::tests::test_create_sequence ... ok [INFO] [stdout] test models::test_start_codon::case_4 ... ok [INFO] [stdout] test models::test_start_codon::case_5 ... ok [INFO] [stdout] test models::test_start_codon::case_6 ... ok [INFO] [stdout] test models::test_start_codon_negative_strand::case_1 ... ok [INFO] [stdout] test models::test_start_codon_negative_strand::case_2 ... ok [INFO] [stdout] test models::test_start_codon_negative_strand::case_3 ... ok [INFO] [stdout] test models::test_start_codon::case_1 ... ok [INFO] [stdout] test gtf::writer::tests::test_nm_201550 ... ok [INFO] [stdout] test models::test_start_codon_negative_strand::case_4 ... ok [INFO] [stdout] test models::test_start_codon::case_3 ... ok [INFO] [stdout] test models::test_stop_codon::case_1 ... ok [INFO] [stdout] test models::test_start_codon::case_2 ... ok [INFO] [stdout] test models::test_codon::test_codon_builder ... ok [INFO] [stdout] test models::test_stop_codon::case_2 ... ok [INFO] [stdout] test models::test_stop_codon::case_3 ... ok [INFO] [stdout] test models::test_stop_codon::case_5 ... ok [INFO] [stdout] test models::test_stop_codon::case_6 ... ok [INFO] [stdout] test models::tests::test_exon_downstream_frame ... ok [INFO] [stdout] test models::test_stop_codon::case_4 ... ok [INFO] [stdout] test models::tests::test_frame_addition ... ok [INFO] [stdout] test models::tests::test_special_transcripts ... ok [INFO] [stdout] test models::transcript::tests::test_cds_coordinates ... ok [INFO] [stdout] test models::transcript::tests::test_utr_coordinates ... ok [INFO] [stdout] test qc::test::test_correct_forward_single_start_codon ... ok [INFO] [stdout] test models::transcript::tests::test_utr5_coordinates ... ok [INFO] [stdout] test models::transcript::tests::test_utr3_coordinates ... ok [INFO] [stdout] test qc::test::test_correct_cds_length ... ok [INFO] [stdout] test qc::test::test_check_inframe_stop ... ok [INFO] [stdout] test qc::test::test_correct_forward_split_start_codon ... ok [INFO] [stdout] test models::transcript::tests::test_exon_coordinates ... ok [INFO] [stdout] test qc::test::test_correct_forward_single_stop_codon ... ok [INFO] [stdout] test qc::test::test_correct_forward_split_stop_codon ... ok [INFO] [stdout] test qc::test::test_correct_reverse_single_stop_codon ... ok [INFO] [stdout] test qc::test::test_correct_reverse_single_start_codon ... ok [INFO] [stdout] test qc::test::test_correct_reverse_split_start_codon ... ok [INFO] [stdout] test qc::test::test_extra_start_codon ... ok [INFO] [stdout] test qc::test::test_incorrect_cds_length ... ok [INFO] [stdout] test qc::test::test_incorrect_forward_single_start_codon ... ok [INFO] [stdout] test qc::test::test_non_coding_cds_length ... ok [INFO] [stdout] test qc::test::test_incorrect_forward_split_start_codon ... ok [INFO] [stdout] test models::tests::test_transcript ... ok [INFO] [stdout] test qc::writer::tests::test_adding_genetic_codes ... ok [INFO] [stdout] test refgene::reader::tests::test_missing_exon_frame ... ok [INFO] [stdout] test refgene::reader::tests::test_missing_exon_start ... ok [INFO] [stdout] test qc::test::test_starts_with_start_codon ... ok [INFO] [stdout] test qc::writer::tests::test_chromosome_with_alternative_stop_codons ... ok [INFO] [stdout] test qc::test::test_qc_check ... ok [INFO] [stdout] test refgene::reader::tests::test_nm_001365057 ... ok [INFO] [stdout] test refgene::reader::tests::test_nm_001365408 ... ok [INFO] [stdout] test refgene::reader::tests::test_nm_001371720 ... ok [INFO] [stdout] test refgene::reader::tests::test_nm_201550 ... ok [INFO] [stdout] test refgene::reader::tests::test_parse_exons_no_cds ... ok [INFO] [stdout] test refgene::reader::tests::test_wrong_exon_frame ... ok [INFO] [stdout] test refgene::tests::test_parse_exons_with_cds ... ok [INFO] [stdout] test refgene::writer::tests::test_nm_001365057 ... ok [INFO] [stdout] test refgene::writer::tests::test_nm_001371720 ... ok [INFO] [stdout] test refgene::reader::tests::test_missing_exon_stop ... ok [INFO] [stdout] test spliceai::writer::test_spliceailine::test_multiple_transcripts ... ok [INFO] [stdout] test spliceai::writer::test_spliceailine::write_multiple_transcripts ... ok [INFO] [stdout] test refgene::writer::tests::test_nm_201550 ... ok [INFO] [stdout] test spliceai::writer::test_spliceailine::test_single_transcript ... ok [INFO] [stdout] test refgene::tests::test_transcript_building ... ok [INFO] [stdout] test utils::genomic_relations::test_intersect::test_a_fully_in_b ... ok [INFO] [stdout] test utils::genomic_relations::test_intersect::test_b_fully_in_a ... ok [INFO] [stdout] test utils::genomic_relations::test_intersect::test_left_overlap ... ok [INFO] [stdout] test utils::genomic_relations::test_intersect::test_no_overlap ... ok [INFO] [stdout] test refgene::tests::test_parsing_and_composing ... ok [INFO] [stdout] test refgene::writer::tests::test_nm_001365408 ... ok [INFO] [stdout] test utils::genomic_relations::test_intersect::test_right_overlap ... ok [INFO] [stdout] test utils::genomic_relations::test_merge::test_merge ... ok [INFO] [stdout] test tests::transcripts::tests::test_mito_transcript ... ok [INFO] [stdout] test spliceai::writer::test_spliceailine::write_transcripts ... ok [INFO] [stdout] test utils::genomic_relations::test_relation::test_downstream ... ok [INFO] [stdout] test utils::genomic_relations::test_relation::test_inside ... ok [INFO] [stdout] test utils::genomic_relations::test_relation::test_upstream ... ok [INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_3 ... ok [INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_4 ... ok [INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_1 ... ok [INFO] [stdout] test utils::genomic_relations::test_relation::test_left ... ok [INFO] [stdout] test utils::genomic_relations::test_overlap::test_cds_overlap ... ok [INFO] [stdout] test utils::genomic_relations::test_relation::test_match ... ok [INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_2 ... ok [INFO] [stdout] test utils::genomic_relations::test_relation::test_overlaps ... ok [INFO] [stdout] test utils::genomic_relations::test_relation::test_right ... ok [INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_5 ... ok [INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_6 ... ok [INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_7 ... ok [INFO] [stdout] test models::sequence::tests::test_contains_fails - should panic ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 132 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.12s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "7288fc1f43f3fe5e9418ff1081a1ecc937934ce67865816c6ca968dbce4341b2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7288fc1f43f3fe5e9418ff1081a1ecc937934ce67865816c6ca968dbce4341b2", kill_on_drop: false }` [INFO] [stdout] 7288fc1f43f3fe5e9418ff1081a1ecc937934ce67865816c6ca968dbce4341b2