[INFO] fetching crate angsd-saf 0.1.0... [INFO] testing angsd-saf-0.1.0 against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_with_libc_patch_0 [INFO] extracting crate angsd-saf 0.1.0 into /workspace/builds/worker-5-tc1/source [INFO] started tweaking crates.io crate angsd-saf 0.1.0 [INFO] finished tweaking crates.io crate angsd-saf 0.1.0 [INFO] tweaked toml for crates.io crate angsd-saf 0.1.0 written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate angsd-saf 0.1.0 on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate angsd-saf 0.1.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded angsd-io-core v0.1.0 [INFO] [stderr] Downloaded libdeflater v0.11.0 [INFO] [stderr] Downloaded cc v1.0.74 [INFO] [stderr] Downloaded noodles-bgzf v0.17.0 [INFO] [stderr] Downloaded libdeflate-sys v0.11.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 56044cf4e5538f68278cbee487155892c05ddb249d87420ee7ab1de4394fb460 [INFO] running `Command { std: "docker" "start" "-a" "56044cf4e5538f68278cbee487155892c05ddb249d87420ee7ab1de4394fb460", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "56044cf4e5538f68278cbee487155892c05ddb249d87420ee7ab1de4394fb460", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "56044cf4e5538f68278cbee487155892c05ddb249d87420ee7ab1de4394fb460", kill_on_drop: false }` [INFO] [stdout] 56044cf4e5538f68278cbee487155892c05ddb249d87420ee7ab1de4394fb460 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 274019eee12cf3279d3cdb7b0c8c5e51c75b993f356f60590118bc3f7daf4ed6 [INFO] running `Command { std: "docker" "start" "-a" "274019eee12cf3279d3cdb7b0c8c5e51c75b993f356f60590118bc3f7daf4ed6", kill_on_drop: false }` [INFO] [stderr] Compiling crossbeam-utils v0.8.12 [INFO] [stderr] Compiling crc32fast v1.3.2 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling autocfg v1.1.0 [INFO] [stderr] Compiling byteorder v1.4.3 [INFO] [stderr] Compiling hashbrown v0.12.3 [INFO] [stderr] Compiling bytes v1.2.1 [INFO] [stderr] Compiling angsd-io-core v0.1.0 [INFO] [stderr] Compiling miniz_oxide v0.5.4 [INFO] [stderr] Compiling indexmap v1.9.1 [INFO] [stderr] Compiling crossbeam-channel v0.5.6 [INFO] [stderr] Compiling flate2 v1.0.24 [INFO] [stderr] Compiling noodles-bgzf v0.17.0 [INFO] [stderr] Compiling angsd-saf v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2.88s [INFO] running `Command { std: "docker" "inspect" "274019eee12cf3279d3cdb7b0c8c5e51c75b993f356f60590118bc3f7daf4ed6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "274019eee12cf3279d3cdb7b0c8c5e51c75b993f356f60590118bc3f7daf4ed6", kill_on_drop: false }` [INFO] [stdout] 274019eee12cf3279d3cdb7b0c8c5e51c75b993f356f60590118bc3f7daf4ed6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 1ecec58800573341ed8d5dfd28ce5c003ab5dcfb90b8da90c2c90b68378ee85f [INFO] running `Command { std: "docker" "start" "-a" "1ecec58800573341ed8d5dfd28ce5c003ab5dcfb90b8da90c2c90b68378ee85f", kill_on_drop: false }` [INFO] [stderr] Compiling angsd-saf v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 1.59s [INFO] running `Command { std: "docker" "inspect" "1ecec58800573341ed8d5dfd28ce5c003ab5dcfb90b8da90c2c90b68378ee85f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1ecec58800573341ed8d5dfd28ce5c003ab5dcfb90b8da90c2c90b68378ee85f", kill_on_drop: false }` [INFO] [stdout] 1ecec58800573341ed8d5dfd28ce5c003ab5dcfb90b8da90c2c90b68378ee85f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 2126e15906c4e548e913d40d75ddf4a8c309b56383e35852326277dcf5c8ba67 [INFO] running `Command { std: "docker" "start" "-a" "2126e15906c4e548e913d40d75ddf4a8c309b56383e35852326277dcf5c8ba67", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.02s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/angsd_saf-01ecdc1558cfe66f) [INFO] [stdout] [INFO] [stdout] running 9 tests [INFO] [stdout] test ext::tests::test_member_paths_from_prefix ... ok [INFO] [stdout] test ext::tests::test_member_paths_from_prefix_with_extra_prefix ... ok [INFO] [stdout] test ext::tests::test_prefix_from_member_path ... ok [INFO] [stdout] test ext::tests::test_prefix_from_non_member_path_invalid ... ok [INFO] [stdout] test record::tests::test_into_full_basic ... ok [INFO] [stdout] test record::tests::test_into_full_no_fill ... ok [INFO] [stdout] test record::tests::test_into_full_no_start ... ok [INFO] [stdout] test record::tests::test_into_full_no_tail ... ok [INFO] [stdout] test writer::traits::tests::test_write_band ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running tests/intersect.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/intersect-5b02298a4eb4997d) [INFO] [stdout] [INFO] [stdout] running 6 tests [INFO] [stdout] test utils::test_records_v3_test_macro ... ok [INFO] [stdout] test utils::test_records_v4_test_macro ... ok [INFO] [stdout] test test_intersect_three_v4 ... ok [INFO] [stdout] test test_intersect_two_v3 ... ok [INFO] [stdout] test test_intersect_two_v4 ... ok [INFO] [stdout] test test_intersect_three_v3 ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.12s [INFO] [stdout] [INFO] [stderr] Running tests/seek.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/seek-3078b5b9be368f8e) [INFO] [stdout] [INFO] [stdout] running 3 tests [INFO] [stdout] test utils::test_records_v4_test_macro ... ok [INFO] [stdout] test utils::test_records_v3_test_macro ... ok [INFO] [stdout] test test_seek_v3 ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running tests/utils.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/utils-d61c06a563e32228) [INFO] [stdout] [INFO] [stdout] running 2 tests [INFO] [stdout] test test_records_v3_test_macro ... ok [INFO] [stdout] test test_records_v4_test_macro ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running tests/write_then_read.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/write_then_read-52e90375f18c71e3) [INFO] [stdout] [INFO] [stdout] running 10 tests [INFO] [stdout] test utils::test_records_v3_test_macro ... ok [INFO] [stdout] test utils::test_records_v4_test_macro ... ok [INFO] [stdout] test test_v3_two_contigs ... ok [INFO] [stdout] test test_v4_two_contigs ... ok [INFO] [stdout] test test_v3_single_record_many_contigs ... ok [INFO] [stdout] test test_v4_single_record_many_contigs ... ok [INFO] [stdout] test test_v3_single_contig ... ok [INFO] [stdout] test test_v4_single_contig ... ok [INFO] [stdout] test test_v4_single_record ... ok [INFO] [stdout] test test_v3_single_record ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 10 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "2126e15906c4e548e913d40d75ddf4a8c309b56383e35852326277dcf5c8ba67", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2126e15906c4e548e913d40d75ddf4a8c309b56383e35852326277dcf5c8ba67", kill_on_drop: false }` [INFO] [stdout] 2126e15906c4e548e913d40d75ddf4a8c309b56383e35852326277dcf5c8ba67