[INFO] cloning repository https://github.com/sebastianstupak/biolens
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/sebastianstupak/biolens" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsebastianstupak%2Fbiolens", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsebastianstupak%2Fbiolens'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] ee6c604d5fdae93ab65277b4897db80ede01548b
[INFO] testing sebastianstupak/biolens against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_with_libc_patch_0
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsebastianstupak%2Fbiolens" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/sebastianstupak/biolens
[INFO] finished tweaking git repo https://github.com/sebastianstupak/biolens
[INFO] tweaked toml for git repo https://github.com/sebastianstupak/biolens written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/sebastianstupak/biolens on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/sebastianstupak/biolens already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded predicates-tree v1.0.12
[INFO] [stderr]   Downloaded predicates-core v1.0.9
[INFO] [stderr]   Downloaded termtree v0.5.1
[INFO] [stderr]   Downloaded wait-timeout v0.2.1
[INFO] [stderr]   Downloaded assert_cmd v2.0.16
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 70b25410bac58b8a9a8dbe4e0cfd56c256c29c47755877908cd8c9912de67aac
[INFO] running `Command { std: "docker" "start" "-a" "70b25410bac58b8a9a8dbe4e0cfd56c256c29c47755877908cd8c9912de67aac", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "70b25410bac58b8a9a8dbe4e0cfd56c256c29c47755877908cd8c9912de67aac", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "70b25410bac58b8a9a8dbe4e0cfd56c256c29c47755877908cd8c9912de67aac", kill_on_drop: false }`
[INFO] [stdout] 70b25410bac58b8a9a8dbe4e0cfd56c256c29c47755877908cd8c9912de67aac
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] 805649c0cc2205b31c5096c0ce882ac40a8e93e15cf9184bbf9f541c3285a3b6
[INFO] running `Command { std: "docker" "start" "-a" "805649c0cc2205b31c5096c0ce882ac40a8e93e15cf9184bbf9f541c3285a3b6", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.94
[INFO] [stderr]    Compiling once_cell v1.21.3
[INFO] [stderr]    Compiling libc v0.2.171
[INFO] [stderr]    Compiling regex-syntax v0.8.5
[INFO] [stderr]    Compiling time-core v0.1.4
[INFO] [stderr]    Compiling serde_json v1.0.140
[INFO] [stderr]    Compiling crossbeam-utils v0.8.21
[INFO] [stderr]    Compiling itoa v1.0.15
[INFO] [stderr]    Compiling deranged v0.4.0
[INFO] [stderr]    Compiling hashbrown v0.15.2
[INFO] [stderr]    Compiling ryu v1.0.20
[INFO] [stderr]    Compiling lazy_static v1.5.0
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling pin-project-lite v0.2.16
[INFO] [stderr]    Compiling winnow v0.5.40
[INFO] [stderr]    Compiling sharded-slab v0.1.7
[INFO] [stderr]    Compiling time-macros v0.2.22
[INFO] [stderr]    Compiling option-ext v0.2.0
[INFO] [stderr]    Compiling smallvec v1.15.0
[INFO] [stderr]    Compiling clap_builder v4.5.36
[INFO] [stderr]    Compiling humantime v2.2.0
[INFO] [stderr]    Compiling biolens-common v0.0.1 (/opt/rustwide/workdir/common)
[INFO] [stderr]    Compiling tracing-core v0.1.33
[INFO] [stderr]    Compiling thread_local v1.1.8
[INFO] [stderr]    Compiling termcolor v1.4.1
[INFO] [stderr]    Compiling biolens-viz v0.0.1 (/opt/rustwide/workdir/viz)
[INFO] [stderr]    Compiling crossbeam-channel v0.5.15
[INFO] [stderr]    Compiling tracing-log v0.2.0
[INFO] [stderr]    Compiling indexmap v2.9.0
[INFO] [stderr]    Compiling quote v1.0.40
[INFO] [stderr]    Compiling syn v2.0.100
[INFO] [stderr]    Compiling is-terminal v0.4.16
[INFO] [stderr]    Compiling dirs-sys v0.4.1
[INFO] [stderr]    Compiling directories v5.0.1
[INFO] [stderr]    Compiling time v0.3.41
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling env_logger v0.10.2
[INFO] [stderr]    Compiling serde_derive v1.0.219
[INFO] [stderr]    Compiling tracing-attributes v0.1.28
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling clap_derive v4.5.32
[INFO] [stderr]    Compiling tracing v0.1.41
[INFO] [stderr]    Compiling clap v4.5.36
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]    Compiling serde_spanned v0.6.8
[INFO] [stderr]    Compiling toml_datetime v0.6.8
[INFO] [stderr]    Compiling tracing-serde v0.2.0
[INFO] [stderr]    Compiling toml_edit v0.19.15
[INFO] [stderr]    Compiling tracing-subscriber v0.3.19
[INFO] [stderr]    Compiling toml v0.7.8
[INFO] [stderr]    Compiling tracing-appender v0.2.3
[INFO] [stderr]    Compiling biolens v0.0.1 (/opt/rustwide/workdir/core)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 29.11s
[INFO] running `Command { std: "docker" "inspect" "805649c0cc2205b31c5096c0ce882ac40a8e93e15cf9184bbf9f541c3285a3b6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "805649c0cc2205b31c5096c0ce882ac40a8e93e15cf9184bbf9f541c3285a3b6", kill_on_drop: false }`
[INFO] [stdout] 805649c0cc2205b31c5096c0ce882ac40a8e93e15cf9184bbf9f541c3285a3b6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] 93064d18d5d93dfd88165516bafc7f0fbd8869ccf3358ff5f2b294a850ec9020
[INFO] running `Command { std: "docker" "start" "-a" "93064d18d5d93dfd88165516bafc7f0fbd8869ccf3358ff5f2b294a850ec9020", kill_on_drop: false }`
[INFO] [stderr]    Compiling regex-syntax v0.8.5
[INFO] [stderr]    Compiling autocfg v1.4.0
[INFO] [stderr]    Compiling predicates-core v1.0.9
[INFO] [stderr]    Compiling rustix v1.0.5
[INFO] [stderr]    Compiling getrandom v0.3.2
[INFO] [stderr]    Compiling normalize-line-endings v0.3.0
[INFO] [stderr]    Compiling difflib v0.4.0
[INFO] [stderr]    Compiling assert_cmd v2.0.16
[INFO] [stderr]    Compiling linux-raw-sys v0.9.4
[INFO] [stderr]    Compiling termtree v0.5.1
[INFO] [stderr]    Compiling bitflags v2.9.0
[INFO] [stderr]    Compiling wait-timeout v0.2.1
[INFO] [stderr]    Compiling fastrand v2.3.0
[INFO] [stderr]    Compiling biolens-viz v0.0.1 (/opt/rustwide/workdir/viz)
[INFO] [stderr]    Compiling biolens-common v0.0.1 (/opt/rustwide/workdir/common)
[INFO] [stderr]    Compiling predicates-tree v1.0.12
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling float-cmp v0.10.0
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling tempfile v3.19.1
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling bstr v1.12.0
[INFO] [stderr]    Compiling tracing-subscriber v0.3.19
[INFO] [stderr]    Compiling env_logger v0.10.2
[INFO] [stderr]    Compiling predicates v3.1.3
[INFO] [stderr]    Compiling tracing-appender v0.2.3
[INFO] [stderr]    Compiling biolens v0.0.1 (/opt/rustwide/workdir/core)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 19.07s
[INFO] running `Command { std: "docker" "inspect" "93064d18d5d93dfd88165516bafc7f0fbd8869ccf3358ff5f2b294a850ec9020", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "93064d18d5d93dfd88165516bafc7f0fbd8869ccf3358ff5f2b294a850ec9020", kill_on_drop: false }`
[INFO] [stdout] 93064d18d5d93dfd88165516bafc7f0fbd8869ccf3358ff5f2b294a850ec9020
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] 83d53c400faf7fcac8f5f70a33c257f8e1226e6644b8ed5b8960964dc96ae03e
[INFO] running `Command { std: "docker" "start" "-a" "83d53c400faf7fcac8f5f70a33c257f8e1226e6644b8ed5b8960964dc96ae03e", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.21s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/biolens_core-9eba867131ddd01f)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/biolens-0323b6408d2ece57)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/mod.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/mod-a1bad5aba0569856)
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test logging::test_build_config_from_args::test_build_config_from_args ... ok
[INFO] [stdout] test logging::test_config_default::test_config_default ... ok
[INFO] [stdout] test logging::test_get_log_directory::test_get_log_directory ... ok
[INFO] [stdout] test logging::test_get_log_level::test_get_log_level ... ok
[INFO] [stdout] test logging::test_save_and_load_config::test_save_and_load_config ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/biolens_common-94ff3c2c443f2700)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/biolens_viz-00786a5ce97df98b)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "83d53c400faf7fcac8f5f70a33c257f8e1226e6644b8ed5b8960964dc96ae03e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "83d53c400faf7fcac8f5f70a33c257f8e1226e6644b8ed5b8960964dc96ae03e", kill_on_drop: false }`
[INFO] [stdout] 83d53c400faf7fcac8f5f70a33c257f8e1226e6644b8ed5b8960964dc96ae03e